Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N13.3 |
| Conread position: | 2-798 |
| Cow position: | chr12:2282010-2282803 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 66 |
| Conread position: | 4-793 |
| Cow position: | chr12:20998652-20997881 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 29 |
| Conread position: | 5-803 |
| Cow position: | chr12:22206275-22205484 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 572, 52 |
| Conread position: | 19-797 |
| Cow position: | chr12:8678640-8677864 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 310 |
| Conread position: | 22-293 |
| Cow position: | chr12:21883506-21883779 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 201 |
| Conread position: | 22-714 |
| Cow position: | chr12:21207179-21207867 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 312 |
| Conread position: | 22-797 |
| Cow position: | chr12:21426187-21426951 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 69 |
| Conread position: | 22-798 |
| Cow position: | chr12:3360395-3361161 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 277 |
| Conread position: | 22-798 |
| Cow position: | chr12:21255167-21254399 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 83 |
| Conread position: | 22-798 |
| Cow position: | chr12:32653029-32653801 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 214 |
| Conread position: | 22-798 |
| Cow position: | chr12:37558041-37558813 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 312 |
| Conread position: | 22-798 |
| Cow position: | chr12:43031892-43031128 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 134 |
| Conread position: | 22-804 |
| Cow position: | chr12:15951763-15951002 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 68 |
| Conread position: | 23-797 |
| Cow position: | chr12:1401977-1402747 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 13 |
| Conread position: | 23-797 |
| Cow position: | chr12:6407159-6406394 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 126 |
| Conread position: | 23-797 |
| Cow position: | chr12:11097724-11098499 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 357 |
| Conread position: | 26-797 |
| Cow position: | chr12:21499607-21500358 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 30-710 |
| Cow position: | chr12:26141303-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 206 |
| Conread position: | 38-797 |
| Cow position: | chr12:27933444-27932688 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 68 |
| Conread position: | 38-801 |
| Cow position: | chr12:252559-251796 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 139 |
| Conread position: | 38-803 |
| Cow position: | chr12:25101566-25100797 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 292 |
| Conread position: | 53-797 |
| Cow position: | chr12:42860302-42859570 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 349 |
| Conread position: | 54-656 |
| Cow position: | chr12:17617399-17616791 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 381 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 159 |
| Conread position: | 57-485 |
| Cow position: | chr12:21197349-21197770 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 189 |
| Conread position: | 68-378 |
| Cow position: | chr12:34855636-34855327 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 260 |
| Conread position: | 68-747 |
| Cow position: | chr12:1137124-1137779 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 68-755 |
| Cow position: | chr12:17975075-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 433 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 184, 13 |
| Conread position: | 70-378 |
| Cow position: | chr12:3630722-3631015 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 70-399 |
| Cow position: | chr12:2840055-2839737 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 70-698 |
| Cow position: | chr12:347387-347986 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 423 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 72-803 |
| Cow position: | chr12:21901488-21902200 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 82-782 |
| Cow position: | chr12:14693207-14693864 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 451 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 86-786 |
| Cow position: | chr12:16293471-16294175 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 97-347 |
| Cow position: | chr12:26947710-26947451 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 207 |
| Conread position: | 97-798 |
| Cow position: | chr12:22332176-22332881 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 85 |
| Conread position: | 100-426 |
| Cow position: | chr12:22255337-22255649 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 100-803 |
| Cow position: | chr12:21941339-21942029 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 222 |
| Conread position: | 108-798 |
| Cow position: | chr12:8310754-8311438 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 10 |
| Conread position: | 115-798 |
| Cow position: | chr12:2373-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 357 |
| Conread position: | 116-708 |
| Cow position: | chr12:10483620-10484198 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 118-688 |
| Cow position: | chr12:16326316-16326845 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 150, 100 |
| Conread position: | 123-509 |
| Cow position: | chr12:22026341-22026719 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 128-525 |
| Cow position: | chr12:48404638-48405027 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 128-798 |
| Cow position: | chr12:14663022-14662376 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 116 |
| Conread position: | 145-781 |
| Cow position: | chr12:17128708-17128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 408 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 121 |
| Conread position: | 148-801 |
| Cow position: | chr12:28766408-28765757 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 166-334 |
| Cow position: | chr12:42420784-42420616 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 38 |
| Conread position: | 172-798 |
| Cow position: | chr12:45261238-45261880 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 198-616 |
| Cow position: | chr12:14216006-14216420 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 203, 57 |
| Conread position: | 228-784 |
| Cow position: | chr12:16841427-16840885 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 349 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 200, 63 |
| Conread position: | 245-431 |
| Cow position: | chr12:601346-601164 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 272-702 |
| Cow position: | chr12:8982681-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 52 |
| Conread position: | 318-471 |
| Cow position: | chr12:42420343-42420190 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-798 |
| Cow position: | chr12:26947202-26946733 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 368-784 |
| Cow position: | chr12:3632427-3632021 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 445-784 |
| Cow position: | chr12:34854886-34854561 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 448-804 |
| Cow position: | chr12:18500943-18501295 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 186 |
| Conread position: | 493-775 |
| Cow position: | chr12:2838903-2838621 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 216 |
| Conread position: | 503-710 |
| Cow position: | chr12:48405232-48405441 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 519-803 |
| Cow position: | chr12:21197935-21198221 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 277 |
| Conread position: | 541-798 |
| Cow position: | chr12:33986161-33986419 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 585-709 |
| Cow position: | chr12:48211761-48211643 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 596-798 |
| Cow position: | chr12:5861209-5861410 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 602-798 |
| Cow position: | chr12:23240065-23240260 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 668-804 |
| Cow position: | chr12:1868660-1868793 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 683-798 |
| Cow position: | chr12:31544920-31545035 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 694-798 |
| Cow position: | chr12:4157530-4157634 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.