Cow genome map

Conread name: Ss1.1-Pig4-TMW8026N13.3

Conread position: 1-241
Cow position: chr15:52635288-52635523 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-797
Cow position: chr15:327534-328339 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 435, 14

Conread position: 1-798
Cow position: chr15:14583487-14582706 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 18

Conread position: 2-313
Cow position: chr15:6456409-6456719 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 214
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 2-371
Cow position: chr15:6387171-6386806 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 2-378
Cow position: chr15:2923638-2924011 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 88

Conread position: 2-432
Cow position: chr15:21448198-21448609 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 289
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 53

Conread position: 2-509
Cow position: chr15:370552-370031 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 100

Conread position: 2-624
Cow position: chr15:49676165-49676753 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 75

Conread position: 2-654
Cow position: chr15:10479565-10478927 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 15

Conread position: 2-667
Cow position: chr15:21816618-21815962 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 34

Conread position: 2-708
Cow position: chr15:32723054-32722363 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 2-710
Cow position: chr15:32680433-32679731 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 2-765
Cow position: chr15:51799871-51800605 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 52

Conread position: 2-797
Cow position: chr15:4960776-4961541 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 136

Conread position: 2-797
Cow position: chr15:8098607-8099401 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 35

Conread position: 2-797
Cow position: chr15:32692671-32693452 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 28

Conread position: 2-798
Cow position: chr15:2011215-2011995 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 34

Conread position: 2-798
Cow position: chr15:53338182-53338937 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 66

Conread position: 2-799
Cow position: chr15:35649076-35648321 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 54

Conread position: 2-801
Cow position: chr15:36641757-36642531 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 2-804
Cow position: chr15:1763212-1764009 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 88

Conread position: 3-772
Cow position: chr15:35734593-35735341 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 576, 27

Conread position: 4-797
Cow position: chr15:6156838-6156040 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 133

Conread position: 5-624
Cow position: chr15:317206-316613 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 37

Conread position: 5-784
Cow position: chr15:42935839-42936613 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 574, 154

Conread position: 12-355
Cow position: chr15:38957895-38957550 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 228
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 203, 40

Conread position: 12-798
Cow position: chr15:17272249-17271483 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 33

Conread position: 13-464
Cow position: chr15:6594694-6594246 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 84

Conread position: 13-798
Cow position: chr15:689947-690703 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 154

Conread position: 18-754
Cow position: chr15:44827943-44828687 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 192

Conread position: 19-784
Cow position: chr15:17040114-17039358 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 126

Conread position: 19-797
Cow position: chr15:7836377-7837157 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 24

Conread position: 20-798
Cow position: chr15:50124798-50124028 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 112

Conread position: 21-585
Cow position: chr15:2593660-2593114 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 190

Conread position: 22-241
Cow position: chr15:2640837-2641051 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 189, 0

Conread position: 22-270
Cow position: chr15:8673408-8673161 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 221, 0

Conread position: 22-345
Cow position: chr15:4143618-4143299 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 179
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 22-400
Cow position: chr15:7186898-7186522 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 241

Conread position: 22-485
Cow position: chr15:32709686-32710145 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 185

Conread position: 22-506
Cow position: chr15:50144637-50145123 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 345

Conread position: 22-584
Cow position: chr15:11598973-11598414 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 224

Conread position: 22-617
Cow position: chr15:55347-55934 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 158

Conread position: 22-657
Cow position: chr15:22204975-22204340 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 205

Conread position: 22-663
Cow position: chr15:13428187-13428818 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 189

Conread position: 22-686
Cow position: chr15:21878215-21877555 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 205

Conread position: 22-738
Cow position: chr15:22920274-22920979 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 25

Conread position: 22-794
Cow position: chr15:7259766-7260535 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 134

Conread position: 22-797
Cow position: chr15:17081041-17080288 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 189

Conread position: 22-797
Cow position: chr15:20748551-20749329 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 455

Conread position: 22-798
Cow position: chr15:1520008-1519236 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 315

Conread position: 22-798
Cow position: chr15:1781401-1782168 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 180

Conread position: 22-798
Cow position: chr15:2648515-2647742 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 77

Conread position: 22-798
Cow position: chr15:6554714-6553943 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 182

Conread position: 22-798
Cow position: chr15:7544020-7544795 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 63

Conread position: 22-798
Cow position: chr15:18268836-18268073 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 152

Conread position: 23-532
Cow position: chr15:44068938-44069440 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 23-790
Cow position: chr15:2075799-2076553 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 153

Conread position: 23-797
Cow position: chr15:15347981-15347206 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 450

Conread position: 23-797
Cow position: chr15:42490345-42491117 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 189

Conread position: 23-798
Cow position: chr15:4764354-4765118 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 227

Conread position: 23-803
Cow position: chr15:24294238-24295012 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 554, 59

Conread position: 27-525
Cow position: chr15:20080365-20079865 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 34

Conread position: 28-798
Cow position: chr15:28490988-28490227 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 183

Conread position: 30-801
Cow position: chr15:2006688-2007450 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 22

Conread position: 32-794
Cow position: chr15:1771650-1772408 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 546, 302

Conread position: 37-511
Cow position: chr15:35754666-35754203 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 38-270
Cow position: chr15:21666865-21666633 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 38-784
Cow position: chr15:18575878-18576613 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 69

Conread position: 38-803
Cow position: chr15:4384429-4385188 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 539, 434

Conread position: 38-803
Cow position: chr15:4681380-4682151 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 138

Conread position: 41-531
Cow position: chr15:7933138-7933610 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 41-755
Cow position: chr15:525693-524979 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 20

Conread position: 41-784
Cow position: chr15:18333665-18332929 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 65

Conread position: 41-797
Cow position: chr15:12422006-12421252 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 28

Conread position: 41-797
Cow position: chr15:32495225-32494473 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 41

Conread position: 41-797
Cow position: chr15:37391665-37392405 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 164

Conread position: 41-797
Cow position: chr15:51215750-51216502 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 396

Conread position: 47-795
Cow position: chr15:4794837-4795587 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 215

Conread position: 53-797
Cow position: chr15:31358073-31358799 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 152

Conread position: 59-798
Cow position: chr15:10887786-10888518 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 515, 163

Conread position: 65-758
Cow position: chr15:38979101-38979792 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 34

Conread position: 67-789
Cow position: chr15:4630728-4630015 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 67-797
Cow position: chr15:19738864-19738140 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 39

Conread position: 67-798
Cow position: chr15:7233503-7234216 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 37

Conread position: 67-799
Cow position: chr15:17787960-17787254 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 34

Conread position: 67-804
Cow position: chr15:1662582-1663289 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 28

Conread position: 68-746
Cow position: chr15:29020927-29021597 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 427
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 32, 69

Conread position: 69-801
Cow position: chr15:12614255-12614979 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 151

Conread position: 72-798
Cow position: chr15:21960698-21961421 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 333

Conread position: 73-798
Cow position: chr15:17219668-17218964 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 29

Conread position: 76-797
Cow position: chr15:4649035-4649740 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 503, 14

Conread position: 78-798
Cow position: chr15:42321221-42320507 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 258

Conread position: 79-798
Cow position: chr15:443810-444522 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 132

Conread position: 81-801
Cow position: chr15:40104650-40105379 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 40

Conread position: 83-728
Cow position: chr15:7789144-7788527 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 85-801
Cow position: chr15:24793258-24793963 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 16

Conread position: 88-798
Cow position: chr15:36970134-36970838 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 8

Conread position: 91-757
Cow position: chr15:3262196-3261543 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 477, 115

Conread position: 91-798
Cow position: chr15:17291662-17292351 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 155

Conread position: 92-502
Cow position: chr15:685373-685787 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 49

Conread position: 93-367
Cow position: chr15:1236613-1236889 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 160, 50

Conread position: 97-511
Cow position: chr15:10787876-10787469 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 146

Conread position: 97-532
Cow position: chr15:6371625-6371204 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 97-798
Cow position: chr15:6077951-6078654 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 47

Conread position: 97-798
Cow position: chr15:6278038-6277346 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 18

Conread position: 97-798
Cow position: chr15:8001034-8000320 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 239

Conread position: 99-797
Cow position: chr15:3038309-3037599 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 16

Conread position: 100-630
Cow position: chr15:45886028-45886535 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 100-785
Cow position: chr15:5955244-5954594 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 445
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 216, 48

Conread position: 100-797
Cow position: chr15:39439670-39438985 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 45

Conread position: 100-801
Cow position: chr15:7927849-7928537 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 36

Conread position: 100-801
Cow position: chr15:18023559-18022860 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 161

Conread position: 101-333
Cow position: chr15:53579114-53578881 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 155
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 44

Conread position: 101-423
Cow position: chr15:3565255-3564934 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 209
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 49

Conread position: 103-794
Cow position: chr15:4677724-4678386 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 109

Conread position: 105-422
Cow position: chr15:20837789-20838101 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 49, 21

Conread position: 105-535
Cow position: chr15:6781063-6780644 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 274
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 112, 61

Conread position: 105-754
Cow position: chr15:2677077-2676442 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 145

Conread position: 105-801
Cow position: chr15:8407793-8408471 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 66

Conread position: 108-519
Cow position: chr15:5910939-5910523 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 23, 36

Conread position: 108-647
Cow position: chr15:3843594-3843064 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 7

Conread position: 108-798
Cow position: chr15:36648140-36648821 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 13

Conread position: 113-333
Cow position: chr15:16540548-16540763 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 102, 86

Conread position: 113-798
Cow position: chr15:4195678-4196377 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 131

Conread position: 115-704
Cow position: chr15:35578781-35578206 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 370
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 100, 34

Conread position: 115-798
Cow position: chr15:41365413-41366088 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 235

Conread position: 116-488
Cow position: chr15:35681425-35681069 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 265, 85

Conread position: 118-378
Cow position: chr15:6650812-6650564 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 124, 132

Conread position: 118-798
Cow position: chr15:35747528-35748207 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 363

Conread position: 126-740
Cow position: chr15:13481752-13481132 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 392
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 9

Conread position: 132-323
Cow position: chr15:25789942-25789751 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 135-798
Cow position: chr15:4670675-4671342 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 109

Conread position: 137-798
Cow position: chr15:7894946-7894318 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 206

Conread position: 139-797
Cow position: chr15:4921403-4922064 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 16

Conread position: 139-798
Cow position: chr15:23157574-23156929 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 31

Conread position: 149-593
Cow position: chr15:496337-496773 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 284
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 197, 101

Conread position: 157-424
Cow position: chr15:24715369-24715632 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 80, 100

Conread position: 159-701
Cow position: chr15:16506892-16507420 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 354
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 78, 92

Conread position: 164-798
Cow position: chr15:6472623-6472003 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 47

Conread position: 169-798
Cow position: chr15:4733149-4733772 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 115

Conread position: 169-799
Cow position: chr15:20357979-20357373 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 37

Conread position: 177-798
Cow position: chr15:8749725-8750339 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 229

Conread position: 221-665
Cow position: chr15:1253652-1254077 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 222-801
Cow position: chr15:324286-324853 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 228-796
Cow position: chr15:13072609-13073171 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 374
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 13, 28

Conread position: 236-493
Cow position: chr15:5070898-5070651 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 32

Conread position: 238-481
Cow position: chr15:6326815-6326582 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 244-798
Cow position: chr15:4170331-4169786 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 100

Conread position: 257-801
Cow position: chr15:15266281-15265744 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 163

Conread position: 262-797
Cow position: chr15:21666368-21665833 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 123

Conread position: 275-798
Cow position: chr15:7523113-7522580 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 214

Conread position: 275-801
Cow position: chr15:36627255-36626754 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 15

Conread position: 282-639
Cow position: chr15:9428363-9428729 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 178, 41

Conread position: 293-801
Cow position: chr15:32733381-32732877 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 118

Conread position: 294-548
Cow position: chr15:13871175-13871428 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 305-798
Cow position: chr15:4811744-4812232 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 308-798
Cow position: chr15:29009267-29009753 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 165

Conread position: 322-801
Cow position: chr15:28216680-28216214 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 298
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 11

Conread position: 325-771
Cow position: chr15:4109472-4109021 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 295
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 66, 49

Conread position: 327-798
Cow position: chr15:3010408-3009937 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 146

Conread position: 327-798
Cow position: chr15:3888314-3888793 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 69

Conread position: 332-786
Cow position: chr15:7306646-7307103 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 285
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 77

Conread position: 335-793
Cow position: chr15:51671807-51672257 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 93

Conread position: 348-800
Cow position: chr15:32672337-32672798 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 296
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 134

Conread position: 357-801
Cow position: chr15:16542144-16542583 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 389-801
Cow position: chr15:25789462-25789053 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 31

Conread position: 396-798
Cow position: chr15:1834948-1834547 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 77

Conread position: 407-798
Cow position: chr15:4143300-4142904 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 66

Conread position: 441-611
Cow position: chr15:6650368-6650536 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 32

Conread position: 443-798
Cow position: chr15:7922082-7921729 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 30

Conread position: 458-798
Cow position: chr15:25186369-25186049 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 15

Conread position: 460-801
Cow position: chr15:24715806-24716135 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 18

Conread position: 466-797
Cow position: chr15:44069503-44069836 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 471-801
Cow position: chr15:11299227-11298901 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 11

Conread position: 478-612
Cow position: chr15:32710315-32710450 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 479-801
Cow position: chr15:21448895-21449225 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 119

Conread position: 483-797
Cow position: chr15:35754000-35753685 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 225

Conread position: 492-789
Cow position: chr15:6621950-6622241 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 46

Conread position: 492-801
Cow position: chr15:2802983-2802673 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 85, 31

Conread position: 492-801
Cow position: chr15:35680689-35680388 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 86, 22

Conread position: 502-798
Cow position: chr15:50146695-50146992 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 504-801
Cow position: chr15:1236939-1237235 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 97

Conread position: 504-801
Cow position: chr15:22151824-22152122 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 43, 24

Conread position: 519-798
Cow position: chr15:6593309-6593031 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 91

Conread position: 530-801
Cow position: chr15:6370133-6369863 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 530-803
Cow position: chr15:2924535-2924805 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 22

Conread position: 532-797
Cow position: chr15:7933996-7934243 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 80

Conread position: 532-801
Cow position: chr15:370035-369773 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 191

Conread position: 533-798
Cow position: chr15:10787482-10787215 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 533-800
Cow position: chr15:686175-686441 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 132

Conread position: 577-798
Cow position: chr15:2589773-2589557 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 90, 0

Conread position: 577-798
Cow position: chr15:2592134-2591918 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 90, 0

Conread position: 603-798
Cow position: chr15:56206-56401 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 608-801
Cow position: chr15:498111-498302 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 615-798
Cow position: chr15:6650259-6650086 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 64, 0

Conread position: 628-801
Cow position: chr15:12453160-12453332 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 633-801
Cow position: chr15:9429277-9429456 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 637-798
Cow position: chr15:316113-315946 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 17

Conread position: 644-798
Cow position: chr15:21623458-21623609 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 644-798
Cow position: chr15:32710453-32710607 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 135
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 653-798
Cow position: chr15:1882736-1882592 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 123
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 64, 0

Conread position: 657-798
Cow position: chr15:5068623-5068764 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 121
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 677-801
Cow position: chr15:5544585-5544709 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.