Cow genome map

Conread name: Ss1.1-Pig4-TMW8026N13.3

Conread position: 2-270
Cow position: chr19:544336-544062 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 2-349
Cow position: chr19:6552980-6553301 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 235
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 19

Conread position: 2-446
Cow position: chr19:378313-377871 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 29

Conread position: 2-666
Cow position: chr19:33992-34640 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 33

Conread position: 2-797
Cow position: chr19:4385054-4385825 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 34

Conread position: 2-797
Cow position: chr19:32223846-32223093 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 29

Conread position: 2-799
Cow position: chr19:76670-75911 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 97

Conread position: 4-727
Cow position: chr19:261000-261728 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 25

Conread position: 5-455
Cow position: chr19:35376129-35376572 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 47

Conread position: 12-797
Cow position: chr19:39390099-39390864 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 14

Conread position: 22-461
Cow position: chr19:685433-685862 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 191

Conread position: 22-578
Cow position: chr19:32193164-32193714 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 179

Conread position: 22-798
Cow position: chr19:37487-38251 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 190

Conread position: 22-798
Cow position: chr19:772192-772955 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 73

Conread position: 22-798
Cow position: chr19:7341652-7342424 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 289

Conread position: 22-798
Cow position: chr19:28592870-28593619 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 71

Conread position: 22-798
Cow position: chr19:32212480-32211717 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 189

Conread position: 22-798
Cow position: chr19:43143299-43144072 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 77

Conread position: 23-663
Cow position: chr19:55078331-55078967 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 554, 85

Conread position: 23-797
Cow position: chr19:33941195-33941966 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 554, 76

Conread position: 29-466
Cow position: chr19:52152660-52152237 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 36-784
Cow position: chr19:28582040-28581317 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 47

Conread position: 38-798
Cow position: chr19:40852834-40852082 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 539, 434

Conread position: 41-320
Cow position: chr19:33872843-33873117 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 165, 0

Conread position: 41-797
Cow position: chr19:171810-172566 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 431

Conread position: 41-797
Cow position: chr19:203562-204317 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 169

Conread position: 41-797
Cow position: chr19:10672707-10671951 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 431

Conread position: 53-341
Cow position: chr19:350964-350669 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 51, 8

Conread position: 56-641
Cow position: chr19:20125249-20125802 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 26

Conread position: 57-759
Cow position: chr19:32244294-32245001 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 171

Conread position: 58-634
Cow position: chr19:548013-548557 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 376
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 20

Conread position: 60-687
Cow position: chr19:7405813-7405231 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 399
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 6, 164

Conread position: 60-729
Cow position: chr19:42299903-42299209 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 373

Conread position: 67-690
Cow position: chr19:359867-359260 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 147

Conread position: 67-781
Cow position: chr19:40888020-40887316 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 137

Conread position: 67-804
Cow position: chr19:30754802-30755531 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 55

Conread position: 69-341
Cow position: chr19:36476991-36477254 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 175
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 72-400
Cow position: chr19:32238227-32237899 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 88

Conread position: 72-514
Cow position: chr19:4252730-4252288 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 258

Conread position: 78-784
Cow position: chr19:32665169-32665867 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 23

Conread position: 82-614
Cow position: chr19:32183804-32183290 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 229

Conread position: 86-439
Cow position: chr19:42649424-42649079 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 236
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 108

Conread position: 92-789
Cow position: chr19:439996-439310 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 383

Conread position: 95-754
Cow position: chr19:20111571-20110944 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 246

Conread position: 97-604
Cow position: chr19:29209222-29209721 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 6

Conread position: 97-696
Cow position: chr19:31341379-31341976 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 65

Conread position: 100-718
Cow position: chr19:35978926-35979543 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 124

Conread position: 101-624
Cow position: chr19:33326373-33326891 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 334
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 110

Conread position: 105-647
Cow position: chr19:5865177-5864635 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 349
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 78, 106

Conread position: 108-513
Cow position: chr19:1031779-1032169 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 118

Conread position: 108-679
Cow position: chr19:30371944-30372511 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 10

Conread position: 108-797
Cow position: chr19:36036033-36036690 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 420
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 106, 114

Conread position: 109-794
Cow position: chr19:416317-417012 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 9

Conread position: 113-797
Cow position: chr19:171071-170391 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 5

Conread position: 118-572
Cow position: chr19:4533067-4532625 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 150

Conread position: 128-762
Cow position: chr19:39688236-39688847 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 76

Conread position: 137-784
Cow position: chr19:7488008-7488655 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 267

Conread position: 169-801
Cow position: chr19:7450270-7449670 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 42

Conread position: 173-770
Cow position: chr19:30743851-30744441 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 373
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 32, 12

Conread position: 173-801
Cow position: chr19:32202488-32203098 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 34

Conread position: 196-801
Cow position: chr19:893848-893256 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 59

Conread position: 205-538
Cow position: chr19:561732-561412 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 8, 28

Conread position: 224-798
Cow position: chr19:39546413-39546967 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 19

Conread position: 243-777
Cow position: chr19:50598579-50599086 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 342
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 164, 12

Conread position: 245-804
Cow position: chr19:15953665-15954199 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 70

Conread position: 263-741
Cow position: chr19:44759672-44760154 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 304
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 40, 134

Conread position: 266-588
Cow position: chr19:27052939-27052623 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 64

Conread position: 266-797
Cow position: chr19:15041988-15042512 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 69

Conread position: 279-664
Cow position: chr19:543790-543404 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 102

Conread position: 281-570
Cow position: chr19:28376370-28376645 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 296-801
Cow position: chr19:42248669-42249162 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 29

Conread position: 319-797
Cow position: chr19:33873304-33873782 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 154

Conread position: 338-757
Cow position: chr19:350387-349976 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 345-799
Cow position: chr19:6553516-6553956 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 83

Conread position: 348-702
Cow position: chr19:32785705-32785355 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 225
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 54, 62

Conread position: 360-697
Cow position: chr19:7068399-7068715 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 27

Conread position: 375-623
Cow position: chr19:18728790-18729031 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 202, 73

Conread position: 389-689
Cow position: chr19:32237733-32237440 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 39

Conread position: 441-798
Cow position: chr19:687065-687419 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 25

Conread position: 459-798
Cow position: chr19:52151814-52151474 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 14

Conread position: 460-799
Cow position: chr19:20104731-20105070 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 13

Conread position: 472-801
Cow position: chr19:377867-377554 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 28

Conread position: 479-662
Cow position: chr19:27038119-27037940 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 27

Conread position: 479-777
Cow position: chr19:2274338-2274043 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 31

Conread position: 483-796
Cow position: chr19:13114417-13114105 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 44

Conread position: 486-801
Cow position: chr19:35376829-35377140 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 491-797
Cow position: chr19:18521756-18522060 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 191
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 491-798
Cow position: chr19:1032125-1032431 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 49

Conread position: 498-778
Cow position: chr19:30428041-30428320 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 65, 16

Conread position: 529-801
Cow position: chr19:17018551-17018811 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 37

Conread position: 530-801
Cow position: chr19:680529-680259 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 35

Conread position: 531-801
Cow position: chr19:352905-352632 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 545-798
Cow position: chr19:42649010-42648758 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 195

Conread position: 599-801
Cow position: chr19:28376641-28376845 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 600-798
Cow position: chr19:40817545-40817347 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 602-743
Cow position: chr19:4532624-4532483 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 605-801
Cow position: chr19:29209762-29209956 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 614-797
Cow position: chr19:5729000-5729185 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 37, 0

Conread position: 617-789
Cow position: chr19:439286-439117 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 147, 0

Conread position: 636-798
Cow position: chr19:341416-341577 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 137
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 653-803
Cow position: chr19:4532418-4532278 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 657-795
Cow position: chr19:163215-163077 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 663-801
Cow position: chr19:42906-43044 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 667-801
Cow position: chr19:27052623-27052491 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 116
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 681-798
Cow position: chr19:5208411-5208528 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 103
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.