Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N13.3 |
| Conread position: | 2-393 |
| Cow position: | chr20:11276754-11276388 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 88 |
| Conread position: | 2-575 |
| Cow position: | chr20:10103023-10102470 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 2-786 |
| Cow position: | chr20:15064278-15065066 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 478 |
| Conread position: | 2-797 |
| Cow position: | chr20:18316058-18315295 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 51 |
| Conread position: | 2-797 |
| Cow position: | chr20:25851468-25850678 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 104 |
| Conread position: | 2-797 |
| Cow position: | chr20:28160296-28161083 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 5-797 |
| Cow position: | chr20:30683859-30684633 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 199 |
| Conread position: | 5-798 |
| Cow position: | chr20:7116950-7116157 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 7-622 |
| Cow position: | chr20:21393098-21393701 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 11-780 |
| Cow position: | chr20:13665647-13664921 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 127 |
| Conread position: | 12-315 |
| Cow position: | chr20:29947712-29948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 12-797 |
| Cow position: | chr20:13762439-13763217 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 14 |
| Conread position: | 12-798 |
| Cow position: | chr20:23470131-23469353 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 14 |
| Conread position: | 19-801 |
| Cow position: | chr20:2791812-2791026 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 21-797 |
| Cow position: | chr20:23798419-23799198 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 211 |
| Conread position: | 22-323 |
| Cow position: | chr20:31123943-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 189, 198 |
| Conread position: | 22-798 |
| Cow position: | chr20:822295-823080 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 189 |
| Conread position: | 22-798 |
| Cow position: | chr20:19437502-19438253 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 189 |
| Conread position: | 23-280 |
| Cow position: | chr20:15291586-15291843 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 178, 182 |
| Conread position: | 23-336 |
| Cow position: | chr20:8004974-8004663 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 23-495 |
| Cow position: | chr20:8994275-8993811 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 23-797 |
| Cow position: | chr20:5534486-5535250 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 76 |
| Conread position: | 23-797 |
| Cow position: | chr20:27868736-27869510 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 151 |
| Conread position: | 26-801 |
| Cow position: | chr20:37578996-37579741 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 27-755 |
| Cow position: | chr20:20755886-20755179 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 30-297 |
| Cow position: | chr20:13681529-13681279 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-803 |
| Cow position: | chr20:21913885-21914644 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 504, 11 |
| Conread position: | 37-797 |
| Cow position: | chr20:12439205-12438448 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 29 |
| Conread position: | 37-800 |
| Cow position: | chr20:20905629-20904899 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 38-271 |
| Cow position: | chr20:35118805-35119033 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 41-640 |
| Cow position: | chr20:2676676-2677270 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 65 |
| Conread position: | 43-590 |
| Cow position: | chr20:29572627-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 67-801 |
| Cow position: | chr20:5483779-5484506 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 67-801 |
| Cow position: | chr20:22206118-22206852 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 32 |
| Conread position: | 68-798 |
| Cow position: | chr20:31379285-31378575 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 59 |
| Conread position: | 87-797 |
| Cow position: | chr20:15098267-15097564 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 92-798 |
| Cow position: | chr20:8313819-8313127 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 15 |
| Conread position: | 97-798 |
| Cow position: | chr20:3252527-3251822 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 337 |
| Conread position: | 99-504 |
| Cow position: | chr20:13757875-13758274 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 217 |
| Conread position: | 108-660 |
| Cow position: | chr20:8371264-8370738 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 351 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 136, 68 |
| Conread position: | 110-553 |
| Cow position: | chr20:10846450-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 66 |
| Conread position: | 111-798 |
| Cow position: | chr20:5561089-5560402 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 125 |
| Conread position: | 115-582 |
| Cow position: | chr20:4800014-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 80 |
| Conread position: | 117-471 |
| Cow position: | chr20:24516503-24516852 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 229, 110 |
| Conread position: | 118-798 |
| Cow position: | chr20:24614183-24614849 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 218 |
| Conread position: | 123-593 |
| Cow position: | chr20:22718043-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 124-794 |
| Cow position: | chr20:3270362-3271013 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 126 |
| Conread position: | 127-505 |
| Cow position: | chr20:28593393-28593765 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 44 |
| Conread position: | 132-396 |
| Cow position: | chr20:3032585-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 137-803 |
| Cow position: | chr20:28565948-28565276 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 168-595 |
| Cow position: | chr20:7085885-7085470 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 200-801 |
| Cow position: | chr20:9954254-9953674 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 221-472 |
| Cow position: | chr20:35119061-35119311 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 222-797 |
| Cow position: | chr20:35119311-35119882 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 181 |
| Conread position: | 226-520 |
| Cow position: | chr20:19192387-19192094 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 232-770 |
| Cow position: | chr20:13782469-13782973 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 167, 93 |
| Conread position: | 250-677 |
| Cow position: | chr20:11679345-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 222 |
| Conread position: | 256-660 |
| Cow position: | chr20:24516807-24517206 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 280-511 |
| Cow position: | chr20:24390168-24390389 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 183 |
| Conread position: | 294-625 |
| Cow position: | chr20:18328245-18327929 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 212, 66 |
| Conread position: | 298-741 |
| Cow position: | chr20:36786693-36786258 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 311-801 |
| Cow position: | chr20:8835805-8835323 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 319-797 |
| Cow position: | chr20:8004392-8003913 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 321-797 |
| Cow position: | chr20:15291854-15292323 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 81 |
| Conread position: | 326-621 |
| Cow position: | chr20:14012311-14012606 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 360-801 |
| Cow position: | chr20:15947518-15947064 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 113 |
| Conread position: | 361-799 |
| Cow position: | chr20:28476194-28476604 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 218, 25 |
| Conread position: | 374-804 |
| Cow position: | chr20:25960992-25961422 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 99 |
| Conread position: | 390-798 |
| Cow position: | chr20:3032969-3033374 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 38 |
| Conread position: | 395-797 |
| Cow position: | chr20:13680146-13679745 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 78 |
| Conread position: | 426-797 |
| Cow position: | chr20:29948440-29948811 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 48 |
| Conread position: | 446-801 |
| Cow position: | chr20:3684524-3684172 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 489-797 |
| Cow position: | chr20:13434942-13434643 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 498-789 |
| Cow position: | chr20:28463486-28463779 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 504-747 |
| Cow position: | chr20:10841229-10840985 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 162 |
| Conread position: | 507-771 |
| Cow position: | chr20:42809267-42809007 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 508-801 |
| Cow position: | chr20:8993622-8993334 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 516-798 |
| Cow position: | chr20:10857006-10856725 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 552-740 |
| Cow position: | chr20:19367523-19367334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 556-801 |
| Cow position: | chr20:35104562-35104314 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 591-803 |
| Cow position: | chr20:10846011-10845805 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 612-798 |
| Cow position: | chr20:21393721-21393906 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 637-801 |
| Cow position: | chr20:22717589-22717424 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 672-798 |
| Cow position: | chr20:19495170-19495296 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.