Cow genome map

Conread name: Ss1.1-Pig4-TMW8026N13.3

Conread position: 1-755
Cow position:
Alignm length: 767
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 14

Conread position: 2-255
Cow position:
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 191, 29

Conread position: 2-300
Cow position:
Alignm length: 299
Alignm identity: 200
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 132, 0

Conread position: 2-662
Cow position:
Alignm length: 664
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 28

Conread position: 2-797
Cow position:
Alignm length: 801
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 179

Conread position: 11-804
Cow position:
Alignm length: 797
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 73

Conread position: 12-797
Cow position:
Alignm length: 790
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 14

Conread position: 13-371
Cow position:
Alignm length: 365
Alignm identity: 240
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 10, 69

Conread position: 21-798
Cow position:
Alignm length: 780
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 190

Conread position: 22-247
Cow position:
Alignm length: 227
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 219, 201

Conread position: 22-268
Cow position:
Alignm length: 247
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 22-384
Cow position:
Alignm length: 366
Alignm identity: 235
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 128, 14

Conread position: 22-451
Cow position:
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 22-499
Cow position:
Alignm length: 479
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 140

Conread position: 22-567
Cow position:
Alignm length: 548
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 198

Conread position: 22-602
Cow position:
Alignm length: 582
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 555, 223

Conread position: 22-789
Cow position:
Alignm length: 769
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 133

Conread position: 22-798
Cow position:
Alignm length: 779
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 140

Conread position: 22-798
Cow position:
Alignm length: 780
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 408

Conread position: 22-798
Cow position:
Alignm length: 790
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 22-798
Cow position:
Alignm length: 778
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 189

Conread position: 23-630
Cow position:
Alignm length: 609
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 554, 44

Conread position: 23-777
Cow position:
Alignm length: 756
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 554, 449

Conread position: 23-797
Cow position:
Alignm length: 780
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 193

Conread position: 26-775
Cow position:
Alignm length: 763
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 15

Conread position: 26-783
Cow position:
Alignm length: 777
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 26

Conread position: 28-798
Cow position:
Alignm length: 774
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 184

Conread position: 29-286
Cow position:
Alignm length: 259
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 186, 198

Conread position: 29-798
Cow position:
Alignm length: 772
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 131

Conread position: 30-783
Cow position:
Alignm length: 757
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 175

Conread position: 30-798
Cow position:
Alignm length: 773
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 11

Conread position: 32-794
Cow position:
Alignm length: 765
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 195

Conread position: 38-533
Cow position:
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 440

Conread position: 38-797
Cow position:
Alignm length: 763
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 95

Conread position: 41-424
Cow position:
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 137

Conread position: 47-749
Cow position:
Alignm length: 730
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 16

Conread position: 53-426
Cow position:
Alignm length: 376
Alignm identity: 254
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 89, 97

Conread position: 67-263
Cow position:
Alignm length: 198
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 33

Conread position: 67-350
Cow position:
Alignm length: 289
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 116

Conread position: 67-798
Cow position:
Alignm length: 744
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 95

Conread position: 67-798
Cow position:
Alignm length: 733
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 512, 267

Conread position: 67-798
Cow position:
Alignm length: 736
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 188

Conread position: 67-801
Cow position:
Alignm length: 750
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 406

Conread position: 69-469
Cow position:
Alignm length: 405
Alignm identity: 259
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 31, 90

Conread position: 70-739
Cow position:
Alignm length: 679
Alignm identity: 418
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 12, 30

Conread position: 71-798
Cow position:
Alignm length: 736
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 5

Conread position: 72-745
Cow position:
Alignm length: 683
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 72-798
Cow position:
Alignm length: 734
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 182

Conread position: 75-798
Cow position:
Alignm length: 730
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 100

Conread position: 78-324
Cow position:
Alignm length: 256
Alignm identity: 167
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 78-701
Cow position:
Alignm length: 649
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 12

Conread position: 82-759
Cow position:
Alignm length: 680
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 25

Conread position: 82-797
Cow position:
Alignm length: 722
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 84-797
Cow position:
Alignm length: 716
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 48

Conread position: 86-797
Cow position:
Alignm length: 717
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 32

Conread position: 92-568
Cow position:
Alignm length: 478
Alignm identity: 311
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 248, 47

Conread position: 92-789
Cow position:
Alignm length: 702
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 94-626
Cow position:
Alignm length: 536
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 97-642
Cow position:
Alignm length: 548
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 28

Conread position: 97-744
Cow position:
Alignm length: 652
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 303

Conread position: 97-798
Cow position:
Alignm length: 705
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 121

Conread position: 97-801
Cow position:
Alignm length: 710
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 48

Conread position: 99-607
Cow position:
Alignm length: 512
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 51

Conread position: 100-797
Cow position:
Alignm length: 703
Alignm identity: 438
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 39

Conread position: 105-511
Cow position:
Alignm length: 411
Alignm identity: 268
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 45, 36

Conread position: 108-741
Cow position:
Alignm length: 659
Alignm identity: 408
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 29

Conread position: 109-676
Cow position:
Alignm length: 570
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 23

Conread position: 110-270
Cow position:
Alignm length: 161
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 118-726
Cow position:
Alignm length: 620
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 77

Conread position: 118-801
Cow position:
Alignm length: 705
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 70

Conread position: 123-801
Cow position:
Alignm length: 688
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 130

Conread position: 123-801
Cow position:
Alignm length: 691
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 77

Conread position: 127-803
Cow position:
Alignm length: 709
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 293

Conread position: 149-797
Cow position:
Alignm length: 651
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 106

Conread position: 152-797
Cow position:
Alignm length: 648
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 321

Conread position: 223-785
Cow position:
Alignm length: 568
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 21

Conread position: 232-801
Cow position:
Alignm length: 579
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 47

Conread position: 234-738
Cow position:
Alignm length: 510
Alignm identity: 324
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 152

Conread position: 236-471
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 22, 82

Conread position: 241-741
Cow position:
Alignm length: 513
Alignm identity: 320
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 169, 13

Conread position: 266-798
Cow position:
Alignm length: 535
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 18

Conread position: 296-797
Cow position:
Alignm length: 508
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 40

Conread position: 322-791
Cow position:
Alignm length: 471
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 151

Conread position: 322-800
Cow position:
Alignm length: 482
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 157

Conread position: 323-801
Cow position:
Alignm length: 484
Alignm identity: 309
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 255, 17

Conread position: 327-789
Cow position:
Alignm length: 465
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 101

Conread position: 335-666
Cow position:
Alignm length: 337
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 74

Conread position: 336-801
Cow position:
Alignm length: 475
Alignm identity: 293
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 73, 10

Conread position: 336-801
Cow position:
Alignm length: 474
Alignm identity: 287
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 10

Conread position: 339-729
Cow position:
Alignm length: 401
Alignm identity: 258
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 77

Conread position: 351-797
Cow position:
Alignm length: 458
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 122

Conread position: 362-713
Cow position:
Alignm length: 353
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 111

Conread position: 362-798
Cow position:
Alignm length: 438
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 112

Conread position: 374-697
Cow position:
Alignm length: 331
Alignm identity: 229
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 156, 80

Conread position: 395-801
Cow position:
Alignm length: 410
Alignm identity: 269
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 135, 31

Conread position: 403-753
Cow position:
Alignm length: 354
Alignm identity: 237
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 64, 8

Conread position: 415-779
Cow position:
Alignm length: 366
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 58

Conread position: 416-794
Cow position:
Alignm length: 381
Alignm identity: 250
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 67

Conread position: 423-729
Cow position:
Alignm length: 318
Alignm identity: 219
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 134, 46

Conread position: 443-671
Cow position:
Alignm length: 230
Alignm identity: 160
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 136, 35

Conread position: 455-797
Cow position:
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 48

Conread position: 466-798
Cow position:
Alignm length: 334
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 9

Conread position: 472-778
Cow position:
Alignm length: 311
Alignm identity: 206
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 68, 56

Conread position: 472-798
Cow position:
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 20

Conread position: 481-777
Cow position:
Alignm length: 299
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 9

Conread position: 486-801
Cow position:
Alignm length: 324
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 36

Conread position: 492-803
Cow position:
Alignm length: 319
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 88, 31

Conread position: 529-798
Cow position:
Alignm length: 272
Alignm identity: 192
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 18

Conread position: 544-798
Cow position:
Alignm length: 256
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 578-797
Cow position:
Alignm length: 221
Alignm identity: 169
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 216, 99

Conread position: 580-797
Cow position:
Alignm length: 218
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 599-738
Cow position:
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 604-804
Cow position:
Alignm length: 201
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 625-783
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 73

Conread position: 628-797
Cow position:
Alignm length: 172
Alignm identity: 141
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 642-801
Cow position:
Alignm length: 160
Alignm identity: 129
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 659-798
Cow position:
Alignm length: 140
Alignm identity: 121
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.