Cow genome map

Conread name: Ss1.1-Pig4-TMW8026N13.3

Conread position: 1-425
Cow position: chr23:31595695-31595291 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 2-423
Cow position: chr23:1141036-1141437 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 214, 34

Conread position: 2-455
Cow position: chr23:2715814-2716263 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 401

Conread position: 2-740
Cow position: chr23:1025578-1024863 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 22

Conread position: 2-797
Cow position: chr23:4509573-4510336 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 53

Conread position: 2-797
Cow position: chr23:19489007-19489801 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 18

Conread position: 2-798
Cow position: chr23:15176533-15177330 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 34

Conread position: 2-798
Cow position: chr23:22147801-22146995 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 17

Conread position: 5-798
Cow position: chr23:15220426-15219632 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 199

Conread position: 12-798
Cow position: chr23:16617368-16616587 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 13-797
Cow position: chr23:4433951-4434715 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 17-276
Cow position: chr23:2756978-2757239 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 46, 9

Conread position: 22-329
Cow position: chr23:14975278-14974978 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 189, 0

Conread position: 22-714
Cow position: chr23:4815563-4816250 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 19

Conread position: 22-798
Cow position: chr23:4359321-4360089 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 110

Conread position: 22-798
Cow position: chr23:19951101-19950324 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 22-798
Cow position: chr23:20301695-20302471 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 84

Conread position: 23-793
Cow position: chr23:27398991-27399757 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 83

Conread position: 23-797
Cow position: chr23:11777971-11778747 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 220

Conread position: 23-797
Cow position: chr23:28912898-28913652 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 90

Conread position: 23-798
Cow position: chr23:28216776-28217549 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 210

Conread position: 23-800
Cow position: chr23:36031885-36031111 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 183

Conread position: 26-764
Cow position: chr23:34174676-34175402 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 27-676
Cow position: chr23:2339895-2340532 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 25

Conread position: 38-797
Cow position: chr23:4641120-4640365 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 45

Conread position: 41-797
Cow position: chr23:2027620-2026860 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 65

Conread position: 41-797
Cow position: chr23:3882191-3881446 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 12

Conread position: 56-471
Cow position: chr23:19449540-19449955 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 262
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 35

Conread position: 67-542
Cow position: chr23:22876099-22875632 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 90

Conread position: 68-797
Cow position: chr23:2796032-2795309 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 334

Conread position: 68-801
Cow position: chr23:19332866-19332147 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 14

Conread position: 72-797
Cow position: chr23:989106-988389 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 82-784
Cow position: chr23:15525156-15525855 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 87-797
Cow position: chr23:967795-967091 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 12

Conread position: 92-801
Cow position: chr23:4276512-4277217 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 223

Conread position: 93-798
Cow position: chr23:31446369-31447074 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 143

Conread position: 97-327
Cow position: chr23:14966413-14966184 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 17

Conread position: 97-747
Cow position: chr23:3013190-3013854 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 198

Conread position: 97-758
Cow position: chr23:5875213-5874563 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 231

Conread position: 97-797
Cow position: chr23:5779527-5778829 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 332

Conread position: 100-508
Cow position: chr23:19017271-19017663 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 115

Conread position: 102-756
Cow position: chr23:22945497-22944856 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 53

Conread position: 105-756
Cow position: chr23:13508639-13509269 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 113-462
Cow position: chr23:1330711-1330368 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 118-472
Cow position: chr23:2765788-2765448 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 123-798
Cow position: chr23:7273246-7273890 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 89

Conread position: 128-460
Cow position: chr23:2574155-2574486 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 128-616
Cow position: chr23:16481761-16481296 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 95

Conread position: 133-655
Cow position: chr23:20988564-20989072 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 339
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 264, 52

Conread position: 134-797
Cow position: chr23:30636706-30636042 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 445, 339

Conread position: 161-318
Cow position: chr23:6469652-6469495 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 171-507
Cow position: chr23:8980856-8980525 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 181-426
Cow position: chr23:2725505-2725744 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 221-798
Cow position: chr23:2313555-2312981 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 251

Conread position: 227-801
Cow position: chr23:4751704-4752248 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 235-432
Cow position: chr23:16616168-16615975 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 251-797
Cow position: chr23:4888393-4888932 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 221

Conread position: 258-797
Cow position: chr23:17184867-17185386 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 366
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 15, 10

Conread position: 266-592
Cow position: chr23:4650944-4651270 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 267-534
Cow position: chr23:7750121-7750387 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 235, 161

Conread position: 268-797
Cow position: chr23:2757310-2757853 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 35

Conread position: 292-762
Cow position: chr23:2524442-2523974 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 48

Conread position: 310-782
Cow position: chr23:20156459-20155972 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 14

Conread position: 315-801
Cow position: chr23:38578072-38578536 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 318-797
Cow position: chr23:14965967-14965493 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 155

Conread position: 318-798
Cow position: chr23:14974782-14974305 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 29

Conread position: 360-801
Cow position: chr23:6216396-6216833 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 111

Conread position: 363-798
Cow position: chr23:31591983-31591543 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 366-798
Cow position: chr23:25684231-25683805 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 408-732
Cow position: chr23:3380408-3380084 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 219
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 18

Conread position: 416-791
Cow position: chr23:29474676-29474311 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 57

Conread position: 429-801
Cow position: chr23:1327570-1327212 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 432-801
Cow position: chr23:10903426-10903799 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 12

Conread position: 458-797
Cow position: chr23:2716309-2716647 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 15

Conread position: 460-797
Cow position: chr23:36211207-36210862 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 18

Conread position: 472-801
Cow position: chr23:2763829-2763514 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 64, 78

Conread position: 487-779
Cow position: chr23:31595290-31594996 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 489-798
Cow position: chr23:2574485-2574794 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Conread position: 492-666
Cow position: chr23:31651602-31651433 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 77

Conread position: 496-763
Cow position: chr23:19450213-19450475 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 33

Conread position: 506-801
Cow position: chr23:26836249-26836535 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 73, 22

Conread position: 532-801
Cow position: chr23:8980318-8980059 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 43

Conread position: 546-771
Cow position: chr23:7352230-7352451 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 55

Conread position: 551-705
Cow position: chr23:2020018-2020170 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 94

Conread position: 566-799
Cow position: chr23:16615970-16615739 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 115

Conread position: 588-762
Cow position: chr23:2782383-2782213 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 99, 0

Conread position: 588-798
Cow position: chr23:29452270-29452059 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 9

Conread position: 589-797
Cow position: chr23:2765403-2765195 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 589-799
Cow position: chr23:33699185-33699391 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 589-801
Cow position: chr23:22875623-22875424 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 60, 0

Conread position: 605-801
Cow position: chr23:3863013-3863208 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 659-801
Cow position: chr23:31650790-31650656 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.