Cow genome map

Conread name: Ss1.1-Pig4-TMW8026N13.3

Conread position: 1-490
Cow position: chr24:13021231-13021704 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 40

Conread position: 1-800
Cow position: chr24:6335247-6336029 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 13

Conread position: 2-287
Cow position: chr24:17314761-17314479 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 191
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 129, 106

Conread position: 2-371
Cow position: chr24:37216280-37216651 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 88

Conread position: 2-553
Cow position: chr24:12289163-12288630 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 2-671
Cow position: chr24:39678004-39678627 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 9

Conread position: 2-700
Cow position: chr24:12131933-12131239 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 16

Conread position: 2-771
Cow position: chr24:15392748-15392022 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 2-798
Cow position: chr24:16649754-16648972 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 19

Conread position: 2-798
Cow position: chr24:33932911-33933711 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 17

Conread position: 2-800
Cow position: chr24:12236613-12237400 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 102

Conread position: 2-801
Cow position: chr24:12798197-12797421 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 67

Conread position: 12-673
Cow position: chr24:14391158-14390511 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 27

Conread position: 12-798
Cow position: chr24:12114471-12113702 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 41

Conread position: 15-670
Cow position: chr24:12224894-12224245 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 94

Conread position: 20-798
Cow position: chr24:33739776-33738995 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 262

Conread position: 22-306
Cow position: chr24:7712722-7712445 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 172, 0

Conread position: 22-371
Cow position: chr24:20267787-20268136 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 214

Conread position: 22-610
Cow position: chr24:6644987-6645570 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 555, 301

Conread position: 22-617
Cow position: chr24:7060681-7061264 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 555, 106

Conread position: 22-798
Cow position: chr24:6025527-6024753 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 197

Conread position: 22-798
Cow position: chr24:6433807-6434585 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 175

Conread position: 22-798
Cow position: chr24:9189161-9188387 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 213

Conread position: 22-798
Cow position: chr24:16085104-16084314 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 22-798
Cow position: chr24:22792745-22793517 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 84

Conread position: 23-313
Cow position: chr24:29186375-29186666 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 26-404
Cow position: chr24:6057253-6057625 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 251
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 87

Conread position: 27-777
Cow position: chr24:32330923-32331639 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 30-765
Cow position: chr24:44017123-44017858 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 76

Conread position: 30-797
Cow position: chr24:19832963-19833730 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 549, 20

Conread position: 32-798
Cow position: chr24:6083596-6084362 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 187

Conread position: 36-355
Cow position: chr24:5993387-5993075 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 144, 178

Conread position: 38-282
Cow position: chr24:149006-148763 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 165, 0

Conread position: 38-797
Cow position: chr24:4415940-4415184 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 68

Conread position: 38-798
Cow position: chr24:14385023-14384270 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 542, 37

Conread position: 41-798
Cow position: chr24:6144948-6145713 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 98

Conread position: 56-797
Cow position: chr24:12161488-12162199 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 42

Conread position: 61-789
Cow position: chr24:14873733-14873014 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 67

Conread position: 61-801
Cow position: chr24:36707469-36708195 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 132

Conread position: 67-449
Cow position: chr24:30117126-30117485 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 62, 17

Conread position: 67-784
Cow position: chr24:6351807-6352516 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 374

Conread position: 68-506
Cow position: chr24:17525057-17525494 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 281
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 82

Conread position: 68-514
Cow position: chr24:13318851-13319288 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 277
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 184

Conread position: 68-668
Cow position: chr24:38635362-38635969 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 236

Conread position: 74-623
Cow position: chr24:17187165-17187710 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 342

Conread position: 74-798
Cow position: chr24:12085825-12086543 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 32

Conread position: 76-801
Cow position: chr24:1447203-1447902 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 21

Conread position: 78-625
Cow position: chr24:36296793-36297340 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 372
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 54, 147

Conread position: 78-801
Cow position: chr24:35838999-35838272 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 25

Conread position: 81-801
Cow position: chr24:12567881-12568572 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 81-801
Cow position: chr24:35841974-35841275 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 102

Conread position: 82-407
Cow position: chr24:12207774-12208092 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 148, 19

Conread position: 92-385
Cow position: chr24:35991012-35990728 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 123, 82

Conread position: 92-525
Cow position: chr24:22855849-22856274 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 266
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 192, 16

Conread position: 93-403
Cow position: chr24:32125854-32125562 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 227, 107

Conread position: 96-513
Cow position: chr24:13181693-13181293 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 100-567
Cow position: chr24:1489986-1490441 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 305
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 8

Conread position: 100-765
Cow position: chr24:14885598-14884942 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 182

Conread position: 101-743
Cow position: chr24:6417659-6417029 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 404
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 111

Conread position: 101-789
Cow position: chr24:23098783-23098111 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 112

Conread position: 108-800
Cow position: chr24:6537226-6537883 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 36

Conread position: 110-798
Cow position: chr24:13187852-13188518 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 467, 101

Conread position: 115-783
Cow position: chr24:37321934-37321283 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 36

Conread position: 120-794
Cow position: chr24:12485650-12484976 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 103

Conread position: 125-801
Cow position: chr24:36560398-36559739 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 7

Conread position: 131-612
Cow position: chr24:2635797-2636276 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 5

Conread position: 132-380
Cow position: chr24:37301394-37301154 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 156, 79

Conread position: 138-559
Cow position: chr24:13531849-13531431 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 187

Conread position: 169-573
Cow position: chr24:5455838-5455432 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 264
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 125, 75

Conread position: 191-798
Cow position: chr24:8029889-8030496 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 42

Conread position: 199-705
Cow position: chr24:5890271-5889781 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 315
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 214, 51

Conread position: 225-743
Cow position: chr24:28042459-28041973 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 329
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 51

Conread position: 240-777
Cow position: chr24:4464469-4463944 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 348
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 29, 143

Conread position: 267-549
Cow position: chr24:6511315-6511032 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 197, 52

Conread position: 282-801
Cow position: chr24:17303767-17303268 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 99

Conread position: 285-801
Cow position: chr24:14584927-14585424 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 296-557
Cow position: chr24:584363-584102 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 161

Conread position: 296-797
Cow position: chr24:6515200-6514708 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 57

Conread position: 299-744
Cow position: chr24:22951982-22952427 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 174

Conread position: 305-797
Cow position: chr24:148763-148274 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 95

Conread position: 307-790
Cow position: chr24:9092419-9091948 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 164

Conread position: 318-797
Cow position: chr24:12335927-12335430 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 457

Conread position: 347-798
Cow position: chr24:40548771-40549219 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 127

Conread position: 347-801
Cow position: chr24:40654283-40654732 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 368-798
Cow position: chr24:37216919-37217343 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 105

Conread position: 369-575
Cow position: chr24:35987428-35987236 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 393-798
Cow position: chr24:6660668-6660254 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 80

Conread position: 441-796
Cow position: chr24:26906908-26907263 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 25

Conread position: 444-790
Cow position: chr24:17696976-17696641 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 13

Conread position: 459-744
Cow position: chr24:13524126-13524395 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 14

Conread position: 491-800
Cow position: chr24:7091558-7091248 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 73

Conread position: 502-797
Cow position: chr24:29187331-29187628 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 510-754
Cow position: chr24:12146078-12145830 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 33

Conread position: 519-782
Cow position: chr24:1438118-1437859 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 59, 28

Conread position: 519-804
Cow position: chr24:12288329-12288040 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 26

Conread position: 578-798
Cow position: chr24:6645827-6646045 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 205

Conread position: 590-773
Cow position: chr24:8152868-8152688 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 119

Conread position: 603-790
Cow position: chr24:7061539-7061726 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 611-798
Cow position: chr24:5993071-5992884 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 636-801
Cow position: chr24:16376708-16376868 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 81, 39

Conread position: 647-801
Cow position: chr24:14333237-14333391 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 672-798
Cow position: chr24:43813983-43814109 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 688-798
Cow position: chr24:6444517-6444626 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 693-798
Cow position: chr24:12130733-12130629 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 0

Show alignments to all cow chromosomes.