Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N13.3 |
| Conread position: | 1-654 |
| Cow position: | chr25:33991546-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 2-625 |
| Cow position: | chr25:17561086-17560477 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 94 |
| Conread position: | 2-801 |
| Cow position: | chr25:18092531-18093314 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 577, 52 |
| Conread position: | 5-779 |
| Cow position: | chr25:25506159-25506931 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 344 |
| Conread position: | 6-798 |
| Cow position: | chr25:18276320-18275527 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 144 |
| Conread position: | 12-784 |
| Cow position: | chr25:22147014-22147782 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 14 |
| Conread position: | 13-692 |
| Cow position: | chr25:18224091-18223450 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 415 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 15-488 |
| Cow position: | chr25:24171558-24172018 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 110, 14 |
| Conread position: | 19-803 |
| Cow position: | chr25:34347467-34346709 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 560, 49 |
| Conread position: | 20-798 |
| Cow position: | chr25:17590020-17589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 192 |
| Conread position: | 22-798 |
| Cow position: | chr25:19916615-19917385 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 189 |
| Conread position: | 22-798 |
| Cow position: | chr25:20777372-20776601 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 183 |
| Conread position: | 22-798 |
| Cow position: | chr25:26921757-26922517 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 225 |
| Conread position: | 22-798 |
| Cow position: | chr25:32579511-32580266 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 69 |
| Conread position: | 22-798 |
| Cow position: | chr25:35362893-35362128 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 214 |
| Conread position: | 30-403 |
| Cow position: | chr25:34014809-34014439 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 30-462 |
| Cow position: | chr25:17563367-17562955 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-797 |
| Cow position: | chr25:26278812-26279560 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 549, 11 |
| Conread position: | 34-801 |
| Cow position: | chr25:19288807-19288042 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 37-520 |
| Cow position: | chr25:18302314-18302813 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 167 |
| Conread position: | 38-797 |
| Cow position: | chr25:18890472-18889714 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 674, 145 |
| Conread position: | 41-798 |
| Cow position: | chr25:13780583-13781331 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 72 |
| Conread position: | 41-803 |
| Cow position: | chr25:18255807-18255067 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 12 |
| Conread position: | 44-798 |
| Cow position: | chr25:8674477-8675217 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 39 |
| Conread position: | 56-617 |
| Cow position: | chr25:26866783-26867362 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 484 |
| Conread position: | 58-617 |
| Cow position: | chr25:18172904-18173471 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 58-798 |
| Cow position: | chr25:14015740-14016466 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 60 |
| Conread position: | 67-270 |
| Cow position: | chr25:32979188-32978984 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 161 |
| Conread position: | 67-801 |
| Cow position: | chr25:11933950-11933227 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 166 |
| Conread position: | 67-801 |
| Cow position: | chr25:20493937-20494653 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 31 |
| Conread position: | 69-397 |
| Cow position: | chr25:23346114-23345805 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 153, 21 |
| Conread position: | 92-461 |
| Cow position: | chr25:21901676-21902031 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 92-503 |
| Cow position: | chr25:18411685-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 151 |
| Conread position: | 97-798 |
| Cow position: | chr25:17469092-17468401 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 108 |
| Conread position: | 99-798 |
| Cow position: | chr25:18060990-18060301 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 101-610 |
| Cow position: | chr25:28170397-28169901 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 101-645 |
| Cow position: | chr25:14484035-14483499 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 351 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 319, 43 |
| Conread position: | 108-661 |
| Cow position: | chr25:4761383-4760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 108-796 |
| Cow position: | chr25:16232559-16231871 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 436 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 114-765 |
| Cow position: | chr25:20629195-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 358 |
| Conread position: | 115-757 |
| Cow position: | chr25:33243494-33244080 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 17 |
| Conread position: | 116-777 |
| Cow position: | chr25:18421271-18421950 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 5 |
| Conread position: | 118-750 |
| Cow position: | chr25:18028006-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 126 |
| Conread position: | 118-797 |
| Cow position: | chr25:11375724-11375048 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 222 |
| Conread position: | 123-801 |
| Cow position: | chr25:12759970-12759296 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 137-356 |
| Cow position: | chr25:12943796-12943578 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 209, 191 |
| Conread position: | 140-798 |
| Cow position: | chr25:34656801-34656145 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 332 |
| Conread position: | 221-777 |
| Cow position: | chr25:24218385-24217838 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 221-799 |
| Cow position: | chr25:36240278-36240850 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 29 |
| Conread position: | 235-610 |
| Cow position: | chr25:610971-611333 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 268-801 |
| Cow position: | chr25:28030848-28030314 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 311-702 |
| Cow position: | chr25:39560463-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 267, 16 |
| Conread position: | 349-797 |
| Cow position: | chr25:12942847-12942399 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 390-766 |
| Cow position: | chr25:23345446-23345068 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 391-800 |
| Cow position: | chr25:33665974-33665570 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 413-705 |
| Cow position: | chr25:536877-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 167, 40 |
| Conread position: | 429-798 |
| Cow position: | chr25:27022634-27022265 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 465-798 |
| Cow position: | chr25:18195130-18194797 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 480-796 |
| Cow position: | chr25:18645860-18645542 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 93, 132 |
| Conread position: | 492-656 |
| Cow position: | chr25:23388661-23388495 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 500-744 |
| Cow position: | chr25:3378751-3378511 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 517-798 |
| Cow position: | chr25:18303418-18303701 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 207 |
| Conread position: | 528-793 |
| Cow position: | chr25:9544096-9544357 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 544-797 |
| Cow position: | chr25:34014443-34014187 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 34, 141 |
| Conread position: | 653-798 |
| Cow position: | chr25:6172059-6172204 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 653-801 |
| Cow position: | chr25:17560476-17560326 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 687-798 |
| Cow position: | chr25:24659444-24659555 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.