Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N13.3 |
| Conread position: | 2-421 |
| Cow position: | chr27:25116722-25117126 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 2-800 |
| Cow position: | chr27:26556510-26555744 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 99 |
| Conread position: | 2-801 |
| Cow position: | chr27:25805402-25804634 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 33 |
| Conread position: | 12-797 |
| Cow position: | chr27:9993717-9992944 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 156 |
| Conread position: | 19-797 |
| Cow position: | chr27:26324295-26325074 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 454 |
| Conread position: | 22-756 |
| Cow position: | chr27:2364227-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 330 |
| Conread position: | 22-798 |
| Cow position: | chr27:15540815-15541588 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 22-798 |
| Cow position: | chr27:16034905-16034135 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 39 |
| Conread position: | 23-793 |
| Cow position: | chr27:892700-893461 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 144 |
| Conread position: | 23-797 |
| Cow position: | chr27:14460971-14460197 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 276 |
| Conread position: | 23-798 |
| Cow position: | chr27:1208842-1209610 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 83 |
| Conread position: | 24-797 |
| Cow position: | chr27:27662379-27663154 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 30-279 |
| Cow position: | chr27:11471899-11471652 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 30-769 |
| Cow position: | chr27:23334657-23335409 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 546, 11 |
| Conread position: | 38-447 |
| Cow position: | chr27:13897695-13898100 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 41-798 |
| Cow position: | chr27:5910370-5911122 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 243 |
| Conread position: | 63-705 |
| Cow position: | chr27:5997200-5996587 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 395 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 67-588 |
| Cow position: | chr27:25999517-25999018 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 70-536 |
| Cow position: | chr27:1519506-1519972 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 75-729 |
| Cow position: | chr27:5906572-5907243 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 78-308 |
| Cow position: | chr27:16432009-16432242 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 78-669 |
| Cow position: | chr27:28890274-28890855 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 98-622 |
| Cow position: | chr27:21288655-21288154 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 129 |
| Conread position: | 110-801 |
| Cow position: | chr27:6006577-6007265 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 112-798 |
| Cow position: | chr27:25002958-25002276 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 118-794 |
| Cow position: | chr27:27051244-27051939 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 371 |
| Conread position: | 118-801 |
| Cow position: | chr27:16438914-16439590 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 97 |
| Conread position: | 136-798 |
| Cow position: | chr27:15278467-15277814 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 294 |
| Conread position: | 149-573 |
| Cow position: | chr27:3996757-3996342 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 234, 78 |
| Conread position: | 170-798 |
| Cow position: | chr27:25160334-25160940 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 398 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 220-675 |
| Cow position: | chr27:22746337-22745894 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 223-595 |
| Cow position: | chr27:20138988-20138617 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 225-798 |
| Cow position: | chr27:10011156-10010605 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 226-786 |
| Cow position: | chr27:26226988-26227535 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 97 |
| Conread position: | 374-520 |
| Cow position: | chr27:8561424-8561572 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 397-784 |
| Cow position: | chr27:22316443-22316828 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 5 |
| Conread position: | 410-798 |
| Cow position: | chr27:16432296-16432675 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 45 |
| Conread position: | 411-798 |
| Cow position: | chr27:27753324-27752937 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 63 |
| Conread position: | 441-786 |
| Cow position: | chr27:29565472-29565130 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 444-797 |
| Cow position: | chr27:18560290-18560640 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 458-768 |
| Cow position: | chr27:26035136-26034827 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 472-755 |
| Cow position: | chr27:27197437-27197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 153 |
| Conread position: | 475-773 |
| Cow position: | chr27:15638420-15638123 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 233 |
| Conread position: | 566-794 |
| Cow position: | chr27:8561572-8561796 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 628-798 |
| Cow position: | chr27:28078537-28078706 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 53 |
Show alignments to all cow chromosomes.