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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8026N13.3
        

               
Conread position:
               
1-526
               

               
Cow position:
               
chr6:39437082-39437596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr6:13977953-13978479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
1-753
               

               
Cow position:
               
chr6:11278251-11277513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 29
               

               
Conread position:
               
1-798
               

               
Cow position:
               
chr6:19453386-19454143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
799
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
503, 82
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr6:52735840-52736147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr6:43795279-43794907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chr6:6477017-6476519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 145
               

               
Conread position:
               
2-511
               

               
Cow position:
               
chr6:12093417-12092919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
473, 19
               

               
Conread position:
               
2-798
               

               
Cow position:
               
chr6:13846480-13847260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 48
               

               
Conread position:
               
2-798
               

               
Cow position:
               
chr6:30478532-30479327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
588
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
552, 248
               

               
Conread position:
               
2-801
               

               
Cow position:
               
chr6:38231713-38232508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 43
               

               
Conread position:
               
5-797
               

               
Cow position:
               
chr6:3278514-3277722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
572, 163
               

               
Conread position:
               
5-797
               

               
Cow position:
               
chr6:55544891-55544099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
796
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 200
               

               
Conread position:
               
5-797
               

               
Cow position:
               
chr6:65841025-65841812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
800
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 241
               

               
Conread position:
               
5-801
               

               
Cow position:
               
chr6:7180223-7179463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
12-514
               

               
Cow position:
               
chr6:40314359-40314845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
12-797
               

               
Cow position:
               
chr6:27530550-27529779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
571, 14
               

               
Conread position:
               
12-798
               

               
Cow position:
               
chr6:27468712-27469475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
565, 14
               

               
Conread position:
               
12-801
               

               
Cow position:
               
chr6:440144-439370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
14-348
               

               
Cow position:
               
chr6:25357117-25357451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
20-466
               

               
Cow position:
               
chr6:40274708-40275155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 207
               

               
Conread position:
               
22-311
               

               
Cow position:
               
chr6:21836659-21836358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 201
               

               
Conread position:
               
22-369
               

               
Cow position:
               
chr6:41757531-41757186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 69
               

               
Conread position:
               
22-370
               

               
Cow position:
               
chr6:6935672-6935324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 214
               

               
Conread position:
               
22-485
               

               
Cow position:
               
chr6:39907609-39908064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
22-493
               

               
Cow position:
               
chr6:45671722-45672187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
22-532
               

               
Cow position:
               
chr6:65908886-65909384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
22-726
               

               
Cow position:
               
chr6:57870551-57869847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
474, 450
               

               
Conread position:
               
22-790
               

               
Cow position:
               
chr6:7142012-7141267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
555, 101
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr6:13103512-13104286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 158
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr6:35877262-35876490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:332026-331241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 378
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:1405774-1405010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
561, 68
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:2374163-2374928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 204
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:2554164-2554934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 80
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:17598828-17598051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 19
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:26671412-26670630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 196
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:27169029-27169809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
373, 382
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:28062804-28063564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:28492058-28491286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 35
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:34126804-34127581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 338
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:43617168-43617943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr6:68026234-68027020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
790
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 225
               

               
Conread position:
               
22-803
               

               
Cow position:
               
chr6:44151089-44150324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
424, 123
               

               
Conread position:
               
23-506
               

               
Cow position:
               
chr6:21686356-21686823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
23-513
               

               
Cow position:
               
chr6:47043970-47043489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
23-623
               

               
Cow position:
               
chr6:50497996-50497405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 152
               

               
Conread position:
               
23-790
               

               
Cow position:
               
chr6:36525499-36526266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 124
               

               
Conread position:
               
23-793
               

               
Cow position:
               
chr6:24238505-24239288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 83
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr6:8201186-8201965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 357
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr6:15141716-15140952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr6:15281089-15280324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 373
               

               
Conread position:
               
24-507
               

               
Cow position:
               
chr6:60384442-60384920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
26-535
               

               
Cow position:
               
chr6:42360205-42359716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
29-798
               

               
Cow position:
               
chr6:44028517-44029267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
550, 62
               

               
Conread position:
               
34-470
               

               
Cow position:
               
chr6:63198661-63198243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
37-357
               

               
Cow position:
               
chr6:52049-51729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 297
               

               
Conread position:
               
37-803
               

               
Cow position:
               
chr6:30275714-30274944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
38-744
               

               
Cow position:
               
chr6:21971146-21971860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
520, 136
               

               
Conread position:
               
38-771
               

               
Cow position:
               
chr6:28274461-28275183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
545, 68
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr6:3488923-3488171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
552
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 166
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr6:34893538-34892778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
541, 136
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr6:40555141-40554359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 225
               

               
Conread position:
               
38-803
               

               
Cow position:
               
chr6:3890018-3889243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 218
               

               
Conread position:
               
40-798
               

               
Cow position:
               
chr6:65822661-65821898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 109
               

               
Conread position:
               
41-280
               

               
Cow position:
               
chr6:2111481-2111246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
41-558
               

               
Cow position:
               
chr6:1823774-1823264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
41-774
               

               
Cow position:
               
chr6:5951763-5951042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
527, 79
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr6:913103-913881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 204
               

               
Conread position:
               
41-798
               

               
Cow position:
               
chr6:65880332-65881095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 437
               

               
Conread position:
               
44-801
               

               
Cow position:
               
chr6:35433013-35433761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
52-403
               

               
Cow position:
               
chr6:51190030-51190373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
53-798
               

               
Cow position:
               
chr6:20561625-20560884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
526, 257
               

               
Conread position:
               
56-495
               

               
Cow position:
               
chr6:52803908-52804332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
72, 158
               

               
Conread position:
               
56-798
               

               
Cow position:
               
chr6:10559151-10558432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
59-798
               

               
Cow position:
               
chr6:6566102-6566833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
518, 413
               

               
Conread position:
               
60-705
               

               
Cow position:
               
chr6:39161704-39162320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
61-648
               

               
Cow position:
               
chr6:6838175-6838732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
67-801
               

               
Cow position:
               
chr6:16671887-16672614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
68-640
               

               
Cow position:
               
chr6:52115757-52116322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
69-618
               

               
Cow position:
               
chr6:2885746-2886256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 12
               

               
Conread position:
               
69-778
               

               
Cow position:
               
chr6:1384342-1383669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 181
               

               
Conread position:
               
69-799
               

               
Cow position:
               
chr6:65900409-65899672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 85
               

               
Conread position:
               
72-401
               

               
Cow position:
               
chr6:2401746-2402083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
75-799
               

               
Cow position:
               
chr6:62396669-62397397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
78-798
               

               
Cow position:
               
chr6:29311003-29311719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 127
               

               
Conread position:
               
78-801
               

               
Cow position:
               
chr6:17045572-17046286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 252
               

               
Conread position:
               
90-798
               

               
Cow position:
               
chr6:33388338-33389070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 266
               

               
Conread position:
               
93-321
               

               
Cow position:
               
chr6:28106241-28106016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
93-525
               

               
Cow position:
               
chr6:10054148-10054567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 79
               

               
Conread position:
               
93-786
               

               
Cow position:
               
chr6:57010323-57009646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
97-494
               

               
Cow position:
               
chr6:65007373-65007758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 50
               

               
Conread position:
               
97-642
               

               
Cow position:
               
chr6:68362787-68362250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
480, 198
               

               
Conread position:
               
98-798
               

               
Cow position:
               
chr6:59919745-59919057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 117
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr6:15896858-15896618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
100-797
               

               
Cow position:
               
chr6:12528362-12529054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
101-801
               

               
Cow position:
               
chr6:50138160-50138828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
110-334
               

               
Cow position:
               
chr6:33459121-33459351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
110-793
               

               
Cow position:
               
chr6:701493-702173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 322
               

               
Conread position:
               
110-798
               

               
Cow position:
               
chr6:13943454-13944137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 137
               

               
Conread position:
               
111-401
               

               
Cow position:
               
chr6:28509176-28509458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
113-270
               

               
Cow position:
               
chr6:13318142-13317986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
113-798
               

               
Cow position:
               
chr6:65927489-65928164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
467, 90
               

               
Conread position:
               
114-501
               

               
Cow position:
               
chr6:42564492-42564874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
115-730
               

               
Cow position:
               
chr6:2955405-2954806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 108
               

               
Conread position:
               
115-804
               

               
Cow position:
               
chr6:35421014-35420372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
464, 38
               

               
Conread position:
               
116-625
               

               
Cow position:
               
chr6:11353285-11353796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
116-648
               

               
Cow position:
               
chr6:42723373-42722849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 163
               

               
Conread position:
               
117-794
               

               
Cow position:
               
chr6:58409360-58408688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
462, 117
               

               
Conread position:
               
119-784
               

               
Cow position:
               
chr6:66231365-66232009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 123
               

               
Conread position:
               
119-798
               

               
Cow position:
               
chr6:10500175-10499496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-607
               

               
Cow position:
               
chr6:52418123-52417658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
124-786
               

               
Cow position:
               
chr6:10519848-10519212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 151
               

               
Conread position:
               
125-728
               

               
Cow position:
               
chr6:42926936-42927540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 219
               

               
Conread position:
               
130-758
               

               
Cow position:
               
chr6:28474270-28474890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
137-797
               

               
Cow position:
               
chr6:8761733-8761077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
442, 336
               

               
Conread position:
               
152-777
               

               
Cow position:
               
chr6:34024429-34025011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
321, 33
               

               
Conread position:
               
153-801
               

               
Cow position:
               
chr6:34203096-34203735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
168-800
               

               
Cow position:
               
chr6:525857-526464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 26
               

               
Conread position:
               
169-601
               

               
Cow position:
               
chr6:20496310-20496721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
361, 49
               

               
Conread position:
               
169-743
               

               
Cow position:
               
chr6:44525151-44524595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
172-789
               

               
Cow position:
               
chr6:34440726-34441340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
182-551
               

               
Cow position:
               
chr6:11030703-11031066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
208-649
               

               
Cow position:
               
chr6:60746821-60746385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
234-801
               

               
Cow position:
               
chr6:37115803-37116366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
238-568
               

               
Cow position:
               
chr6:62488512-62488182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
238-625
               

               
Cow position:
               
chr6:10640798-10641181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
239-801
               

               
Cow position:
               
chr6:59741378-59740827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 21
               

               
Conread position:
               
245-789
               

               
Cow position:
               
chr6:41552704-41553229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 80
               

               
Conread position:
               
273-801
               

               
Cow position:
               
chr6:37642103-37642612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
277-801
               

               
Cow position:
               
chr6:13317776-13317267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 52
               

               
Conread position:
               
284-432
               

               
Cow position:
               
chr6:7866870-7867018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
293-694
               

               
Cow position:
               
chr6:49520667-49520256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 24
               

               
Conread position:
               
297-799
               

               
Cow position:
               
chr6:15476014-15476516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 27
               

               
Conread position:
               
307-801
               

               
Cow position:
               
chr6:1100848-1100356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 147
               

               
Conread position:
               
308-801
               

               
Cow position:
               
chr6:10630205-10630678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 149
               

               
Conread position:
               
310-794
               

               
Cow position:
               
chr6:13276543-13277024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 163
               

               
Conread position:
               
318-793
               

               
Cow position:
               
chr6:33459612-33460086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 151
               

               
Conread position:
               
325-751
               

               
Cow position:
               
chr6:48368152-48368556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
325-798
               

               
Cow position:
               
chr6:16051642-16052108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 144
               

               
Conread position:
               
326-770
               

               
Cow position:
               
chr6:36229185-36228742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
329-747
               

               
Cow position:
               
chr6:17931884-17932293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
336-765
               

               
Cow position:
               
chr6:14763467-14763038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 150
               

               
Conread position:
               
352-471
               

               
Cow position:
               
chr6:28588629-28588510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
355-801
               

               
Cow position:
               
chr6:11402838-11403274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
364-798
               

               
Cow position:
               
chr6:1412145-1411712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
414-762
               

               
Cow position:
               
chr6:17099850-17099508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 118
               

               
Conread position:
               
414-801
               

               
Cow position:
               
chr6:32330948-32330563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
422-797
               

               
Cow position:
               
chr6:32074882-32074508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
139, 15
               

               
Conread position:
               
430-800
               

               
Cow position:
               
chr6:25214119-25214489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
443-623
               

               
Cow position:
               
chr6:40240289-40240473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
452-798
               

               
Cow position:
               
chr6:7866869-7866523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 21
               

               
Conread position:
               
452-798
               

               
Cow position:
               
chr6:43793888-43793526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
460-710
               

               
Cow position:
               
chr6:63198185-63197936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
464-769
               

               
Cow position:
               
chr6:60170473-60170167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
464-798
               

               
Cow position:
               
chr6:39908418-39908755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 138
               

               
Conread position:
               
466-766
               

               
Cow position:
               
chr6:33900727-33900426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
474-784
               

               
Cow position:
               
chr6:64715134-64715443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
474-798
               

               
Cow position:
               
chr6:3148908-3149232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
483-756
               

               
Cow position:
               
chr6:31568886-31568619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
483-799
               

               
Cow position:
               
chr6:66539728-66540020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
491-798
               

               
Cow position:
               
chr6:47043284-47042970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
495-798
               

               
Cow position:
               
chr6:25359430-25359738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
498-651
               

               
Cow position:
               
chr6:52804453-52804606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
498-781
               

               
Cow position:
               
chr6:15896504-15896230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
498-801
               

               
Cow position:
               
chr6:35722291-35722593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
508-799
               

               
Cow position:
               
chr6:51190440-51190727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
528-664
               

               
Cow position:
               
chr6:65910743-65910881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
528-801
               

               
Cow position:
               
chr6:40315013-40315275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
530-801
               

               
Cow position:
               
chr6:6476523-6476258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
533-798
               

               
Cow position:
               
chr6:28105891-28105618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
541-699
               

               
Cow position:
               
chr6:12092921-12092763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
548-779
               

               
Cow position:
               
chr6:12095423-12095195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
561-801
               

               
Cow position:
               
chr6:6155677-6155914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
579-790
               

               
Cow position:
               
chr6:40251672-40251883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
585-786
               

               
Cow position:
               
chr6:6847763-6847567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
629-797
               

               
Cow position:
               
chr6:65007747-65007913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 44
               

               
Conread position:
               
638-789
               

               
Cow position:
               
chr6:31637793-31637642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
639-798
               

               
Cow position:
               
chr6:10641229-10641387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
642-801
               

               
Cow position:
               
chr6:43608286-43608130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
663-765
               

               
Cow position:
               
chr6:9738793-9738895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
666-797
               

               
Cow position:
               
chr6:1822544-1822412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
667-784
               

               
Cow position:
               
chr6:58026855-58026971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
670-803
               

               
Cow position:
               
chr6:39437647-39437782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
672-798
               

               
Cow position:
               
chr6:52693125-52693251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
674-798
               

               
Cow position:
               
chr6:12650845-12650721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
674-798
               

               
Cow position:
               
chr6:65914317-65914440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
691-798
               

               
Cow position:
               
chr6:40275209-40275316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
696-798
               

               
Cow position:
               
chr6:24323255-24323153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.