Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 93-207 |
| Cow position: | chr11:3175869-3175754 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 161-504 |
| Cow position: | chr11:11677647-11677315 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 165-500 |
| Cow position: | chr11:12093854-12093526 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 167-550 |
| Cow position: | chr11:28048911-28049280 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 168-362 |
| Cow position: | chr11:53286875-53287077 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 168 |
| Conread position: | 168-412 |
| Cow position: | chr11:42432440-42432199 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 168-420 |
| Cow position: | chr11:63655047-63655298 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-426 |
| Cow position: | chr11:40775706-40775961 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 147 |
| Conread position: | 168-431 |
| Cow position: | chr11:31874480-31874741 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 168-432 |
| Cow position: | chr11:20733952-20734215 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-432 |
| Cow position: | chr11:52419686-52419415 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 168-432 |
| Cow position: | chr11:64081793-64082056 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-445 |
| Cow position: | chr11:33194265-33194539 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 154 |
| Conread position: | 168-445 |
| Cow position: | chr11:64046288-64046012 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-458 |
| Cow position: | chr11:28229468-28229753 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 168-458 |
| Cow position: | chr11:57627748-57628042 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 198 |
| Conread position: | 168-458 |
| Cow position: | chr11:67450788-67450502 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr11:5342927-5343218 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr11:9734371-9734664 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 168-460 |
| Cow position: | chr11:28108440-28108149 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-460 |
| Cow position: | chr11:36743891-36744181 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr11:61400770-61401052 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 168-460 |
| Cow position: | chr11:73477598-73477307 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-464 |
| Cow position: | chr11:17107397-17107689 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-474 |
| Cow position: | chr11:9606287-9606589 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 168-502 |
| Cow position: | chr11:22935086-22934767 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 145 |
| Conread position: | 168-502 |
| Cow position: | chr11:31926462-31926139 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 168-550 |
| Cow position: | chr11:30188140-30187775 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 168-552 |
| Cow position: | chr11:13066368-13066766 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 340 |
| Conread position: | 168-552 |
| Cow position: | chr11:15898657-15899035 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 134, 97 |
| Conread position: | 169-451 |
| Cow position: | chr11:7116509-7116226 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 194 |
| Conread position: | 169-458 |
| Cow position: | chr11:15983916-15983628 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 169-520 |
| Cow position: | chr11:50027567-50027912 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 171-375 |
| Cow position: | chr11:24243482-24243683 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 171-376 |
| Cow position: | chr11:27058825-27059037 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 171-458 |
| Cow position: | chr11:3493284-3493015 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 171-458 |
| Cow position: | chr11:19063963-19064245 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 171-460 |
| Cow position: | chr11:67846284-67846572 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 172-521 |
| Cow position: | chr11:10090968-10090621 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 165 |
| Conread position: | 173-536 |
| Cow position: | chr11:18072732-18073101 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 174-474 |
| Cow position: | chr11:19102202-19102493 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 120, 37 |
| Conread position: | 177-381 |
| Cow position: | chr11:10217046-10217244 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 177-531 |
| Cow position: | chr11:30206201-30205865 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 178-348 |
| Cow position: | chr11:36712556-36712742 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 187-345 |
| Cow position: | chr11:4057288-4057122 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 187-346 |
| Cow position: | chr11:28054338-28054504 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 187-365 |
| Cow position: | chr11:71329866-71329680 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 187-432 |
| Cow position: | chr11:45111895-45111650 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 187-445 |
| Cow position: | chr11:29668338-29668610 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 187-445 |
| Cow position: | chr11:43514359-43514615 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 187-474 |
| Cow position: | chr11:85393534-85393819 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 187-490 |
| Cow position: | chr11:66727648-66727348 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 187-499 |
| Cow position: | chr11:4027289-4027595 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 148 |
| Conread position: | 187-499 |
| Cow position: | chr11:53431788-53432101 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 187-503 |
| Cow position: | chr11:4270584-4270896 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 187-503 |
| Cow position: | chr11:11988385-11988072 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 170 |
| Conread position: | 187-503 |
| Cow position: | chr11:12358146-12358460 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 170 |
| Conread position: | 187-503 |
| Cow position: | chr11:23877581-23877267 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr11:38835153-38835466 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 187-503 |
| Cow position: | chr11:44156975-44157288 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr11:44252070-44251764 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-503 |
| Cow position: | chr11:58134665-58134352 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 188-413 |
| Cow position: | chr11:36763025-36762809 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 106, 71 |
| Conread position: | 188-463 |
| Cow position: | chr11:4040822-4041092 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 188-496 |
| Cow position: | chr11:9199296-9199606 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 188-500 |
| Cow position: | chr11:9156883-9157186 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-503 |
| Cow position: | chr11:41170416-41170727 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 192-507 |
| Cow position: | chr11:23577918-23577589 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 190 |
| Conread position: | 193-493 |
| Cow position: | chr11:32271053-32271348 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 129 |
| Conread position: | 193-503 |
| Cow position: | chr11:24393592-24393282 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 202-474 |
| Cow position: | chr11:8245566-8245300 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 202-503 |
| Cow position: | chr11:26124671-26124966 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 202-507 |
| Cow position: | chr11:47760439-47760732 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 211-503 |
| Cow position: | chr11:10847691-10847407 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 141 |
| Conread position: | 211-509 |
| Cow position: | chr11:84389875-84389584 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 214-510 |
| Cow position: | chr11:20510367-20510083 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 223-517 |
| Cow position: | chr11:59370055-59369768 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 228-504 |
| Cow position: | chr11:29233024-29233299 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 230-542 |
| Cow position: | chr11:33977979-33978295 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 241-504 |
| Cow position: | chr11:28702228-28701968 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 246-458 |
| Cow position: | chr11:38505399-38505601 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 339-501 |
| Cow position: | chr11:38037556-38037397 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 345-506 |
| Cow position: | chr11:10051436-10051277 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 346-530 |
| Cow position: | chr11:39802561-39802374 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 100, 28 |
Show alignments to all cow chromosomes.