Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 85-207 |
| Cow position: | chr13:17569333-17569214 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 167-517 |
| Cow position: | chr13:21132306-21131951 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 184 |
| Conread position: | 167-552 |
| Cow position: | chr13:31556360-31556741 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 168-418 |
| Cow position: | chr13:677231-676970 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 201 |
| Conread position: | 168-424 |
| Cow position: | chr13:32545739-32545484 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-427 |
| Cow position: | chr13:58118552-58118809 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 168-432 |
| Cow position: | chr13:17308826-17308568 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 168-432 |
| Cow position: | chr13:30656619-30656880 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-432 |
| Cow position: | chr13:41316215-41315952 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-458 |
| Cow position: | chr13:30244322-30244608 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-458 |
| Cow position: | chr13:47229645-47229931 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 195 |
| Conread position: | 168-460 |
| Cow position: | chr13:3057754-3058045 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr13:13325105-13324814 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr13:21839842-21840129 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr13:49974040-49973753 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-468 |
| Cow position: | chr13:50109816-50109518 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 48, 188 |
| Conread position: | 168-473 |
| Cow position: | chr13:34869103-34868801 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 164 |
| Conread position: | 168-500 |
| Cow position: | chr13:6667757-6668086 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 168-514 |
| Cow position: | chr13:43982722-43983062 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 168-530 |
| Cow position: | chr13:32984990-32985350 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-545 |
| Cow position: | chr13:27921874-27922245 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 169-460 |
| Cow position: | chr13:60466690-60466402 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 171-421 |
| Cow position: | chr13:57024062-57023812 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 176 |
| Conread position: | 171-470 |
| Cow position: | chr13:31733732-31734030 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 171-493 |
| Cow position: | chr13:34325202-34325525 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 171-553 |
| Cow position: | chr13:26844441-26844078 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 181 |
| Conread position: | 173-421 |
| Cow position: | chr13:34910808-34911053 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 173-503 |
| Cow position: | chr13:4484152-4483825 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 173-505 |
| Cow position: | chr13:35757599-35757272 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 173-551 |
| Cow position: | chr13:34048980-34048599 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 152 |
| Conread position: | 173-552 |
| Cow position: | chr13:22184884-22185263 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 187-365 |
| Cow position: | chr13:13900208-13900023 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 187-431 |
| Cow position: | chr13:31611964-31612208 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 187-473 |
| Cow position: | chr13:9044844-9044560 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-502 |
| Cow position: | chr13:15520168-15520484 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 220 |
| Conread position: | 187-503 |
| Cow position: | chr13:3653978-3654293 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 187-503 |
| Cow position: | chr13:15924040-15924353 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr13:30238588-30238277 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-503 |
| Cow position: | chr13:32737485-32737791 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 187-517 |
| Cow position: | chr13:33336084-33336402 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 147 |
| Conread position: | 187-525 |
| Cow position: | chr13:34937824-34937499 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 188-499 |
| Cow position: | chr13:1592814-1593124 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 192-503 |
| Cow position: | chr13:23002970-23003278 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 24, 147 |
| Conread position: | 198-512 |
| Cow position: | chr13:60700533-60700824 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 202-503 |
| Cow position: | chr13:4941405-4941119 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 202-503 |
| Cow position: | chr13:34042045-34042338 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 211-422 |
| Cow position: | chr13:15450799-15451001 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 211-500 |
| Cow position: | chr13:30303593-30303310 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 231-552 |
| Cow position: | chr13:29202062-29202385 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 240-500 |
| Cow position: | chr13:22766310-22766057 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 240-512 |
| Cow position: | chr13:34029365-34029094 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 242-458 |
| Cow position: | chr13:2388541-2388748 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 244-458 |
| Cow position: | chr13:2296542-2296743 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 311-534 |
| Cow position: | chr13:30262569-30262353 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 345-501 |
| Cow position: | chr13:11763629-11763785 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 29 |
Show alignments to all cow chromosomes.