Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 12-528 |
| Cow position: | chr14:38815394-38815932 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 47-499 |
| Cow position: | chr14:46465452-46464983 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 163-425 |
| Cow position: | chr14:50138834-50138575 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 168-432 |
| Cow position: | chr14:9045799-9045535 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 190 |
| Conread position: | 168-441 |
| Cow position: | chr14:30735031-30735299 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 168-443 |
| Cow position: | chr14:12742833-12743107 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-458 |
| Cow position: | chr14:17491224-17491510 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 168-460 |
| Cow position: | chr14:2284570-2284280 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 160 |
| Conread position: | 168-460 |
| Cow position: | chr14:23257591-23257300 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 168-460 |
| Cow position: | chr14:30584721-30585011 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 171 |
| Conread position: | 168-460 |
| Cow position: | chr14:33393546-33393838 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-476 |
| Cow position: | chr14:45711751-45712059 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 168-496 |
| Cow position: | chr14:44686282-44685954 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-503 |
| Cow position: | chr14:44287011-44287343 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 172 |
| Conread position: | 168-527 |
| Cow position: | chr14:33237274-33236915 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 77 |
| Conread position: | 168-527 |
| Cow position: | chr14:48970915-48970556 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 169-523 |
| Cow position: | chr14:41409107-41408771 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 171-420 |
| Cow position: | chr14:40340999-40340754 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 171-421 |
| Cow position: | chr14:29777269-29777517 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 171-432 |
| Cow position: | chr14:38531508-38531763 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 113, 169 |
| Conread position: | 171-460 |
| Cow position: | chr14:45671818-45672104 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 171-496 |
| Cow position: | chr14:44226630-44226307 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 202 |
| Conread position: | 171-520 |
| Cow position: | chr14:33488186-33487833 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 211 |
| Conread position: | 171-525 |
| Cow position: | chr14:41489403-41489762 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 171-537 |
| Cow position: | chr14:34043431-34043787 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 173-502 |
| Cow position: | chr14:16273069-16273389 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 185 |
| Conread position: | 173-507 |
| Cow position: | chr14:22031194-22031520 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 173-550 |
| Cow position: | chr14:9515572-9515962 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 218 |
| Conread position: | 175-429 |
| Cow position: | chr14:34860916-34860659 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 175-512 |
| Cow position: | chr14:38147242-38146893 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 253 |
| Conread position: | 177-521 |
| Cow position: | chr14:46513766-46513428 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 178 |
| Conread position: | 178-553 |
| Cow position: | chr14:30706059-30706437 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 182 |
| Conread position: | 180-426 |
| Cow position: | chr14:40738735-40738494 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 182-438 |
| Cow position: | chr14:48404851-48405107 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 187-445 |
| Cow position: | chr14:7472579-7472331 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 170 |
| Conread position: | 187-474 |
| Cow position: | chr14:20782675-20782391 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 26, 169 |
| Conread position: | 187-474 |
| Cow position: | chr14:45081263-45080979 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 187-498 |
| Cow position: | chr14:44552111-44551789 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 213 |
| Conread position: | 187-500 |
| Cow position: | chr14:50110787-50110476 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr14:5529281-5528969 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 169 |
| Conread position: | 187-503 |
| Cow position: | chr14:13779172-13778862 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 187-503 |
| Cow position: | chr14:17000843-17001152 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 187-503 |
| Cow position: | chr14:17685616-17685303 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 187-503 |
| Cow position: | chr14:37224119-37223808 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 187-503 |
| Cow position: | chr14:48254083-48254398 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 187-528 |
| Cow position: | chr14:45302740-45303071 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 146 |
| Conread position: | 188-431 |
| Cow position: | chr14:45206519-45206287 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 188-433 |
| Cow position: | chr14:43558190-43557946 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 188-489 |
| Cow position: | chr14:45161316-45161017 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 188-492 |
| Cow position: | chr14:30596166-30596468 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 188-512 |
| Cow position: | chr14:13303241-13302917 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 170 |
| Conread position: | 188-532 |
| Cow position: | chr14:47655365-47655033 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 189-503 |
| Cow position: | chr14:11153948-11154259 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 192-503 |
| Cow position: | chr14:5512033-5511729 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 193-431 |
| Cow position: | chr14:45028919-45029154 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 141 |
| Conread position: | 193-437 |
| Cow position: | chr14:48825507-48825264 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 193-503 |
| Cow position: | chr14:19328056-19328361 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 208-460 |
| Cow position: | chr14:29047716-29047962 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 78, 144 |
| Conread position: | 211-434 |
| Cow position: | chr14:45917833-45917615 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 142 |
| Conread position: | 211-541 |
| Cow position: | chr14:35386624-35386943 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 222-485 |
| Cow position: | chr14:45834324-45834071 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 228-525 |
| Cow position: | chr14:37413269-37413558 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 185, 126 |
| Conread position: | 228-525 |
| Cow position: | chr14:37457234-37457520 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 229-571 |
| Cow position: | chr14:33342305-33341961 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 230-537 |
| Cow position: | chr14:44256800-44257113 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 231-527 |
| Cow position: | chr14:17760729-17761016 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 246-504 |
| Cow position: | chr14:44775897-44776146 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 258-513 |
| Cow position: | chr14:46474981-46474733 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 265-503 |
| Cow position: | chr14:16919555-16919783 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 286-503 |
| Cow position: | chr14:28993740-28993947 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.