Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 83-460 |
| Cow position: | chr16:53046334-53045949 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 153-553 |
| Cow position: | chr16:18763719-18764115 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 163-458 |
| Cow position: | chr16:41163168-41163459 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 194 |
| Conread position: | 165-398 |
| Cow position: | chr16:12669990-12670227 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 168-316 |
| Cow position: | chr16:49256306-49256457 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 168-349 |
| Cow position: | chr16:6943495-6943307 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-386 |
| Cow position: | chr16:28197786-28198013 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 168-433 |
| Cow position: | chr16:25892608-25892347 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 176 |
| Conread position: | 168-458 |
| Cow position: | chr16:5661735-5661450 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-460 |
| Cow position: | chr16:4302448-4302736 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 168-460 |
| Cow position: | chr16:28170480-28170769 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr16:31832518-31832227 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-512 |
| Cow position: | chr16:25171243-25170902 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 168-519 |
| Cow position: | chr16:9930826-9930479 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 168-552 |
| Cow position: | chr16:25257828-25257441 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 169-552 |
| Cow position: | chr16:49234938-49235317 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 171-445 |
| Cow position: | chr16:2238857-2239123 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 94 |
| Conread position: | 171-445 |
| Cow position: | chr16:25188517-25188246 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 171-498 |
| Cow position: | chr16:32622-32299 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 172-509 |
| Cow position: | chr16:16271713-16272045 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 172-512 |
| Cow position: | chr16:42185772-42186104 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 173-330 |
| Cow position: | chr16:41755830-41755989 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 173-499 |
| Cow position: | chr16:15566629-15566303 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 173 |
| Conread position: | 173-500 |
| Cow position: | chr16:34530209-34529885 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 184 |
| Conread position: | 173-511 |
| Cow position: | chr16:28437498-28437842 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 206 |
| Conread position: | 177-547 |
| Cow position: | chr16:42739222-42739589 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 168 |
| Conread position: | 179-426 |
| Cow position: | chr16:29090394-29090646 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 168 |
| Conread position: | 180-503 |
| Cow position: | chr16:25441507-25441185 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 187-362 |
| Cow position: | chr16:15476716-15476533 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 187-415 |
| Cow position: | chr16:15493103-15492875 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 187-433 |
| Cow position: | chr16:31592040-31592285 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 28, 160 |
| Conread position: | 187-439 |
| Cow position: | chr16:836915-836668 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 112, 156 |
| Conread position: | 187-441 |
| Cow position: | chr16:24105576-24105325 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 187-500 |
| Cow position: | chr16:2411094-2411405 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 187-500 |
| Cow position: | chr16:2483267-2483578 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr16:407158-407470 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 187-503 |
| Cow position: | chr16:1567580-1567893 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 187-503 |
| Cow position: | chr16:5484193-5483884 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 187-503 |
| Cow position: | chr16:8816232-8816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 160 |
| Conread position: | 187-503 |
| Cow position: | chr16:12538052-12538364 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr16:23252633-23252946 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-503 |
| Cow position: | chr16:25341831-25341526 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 187-503 |
| Cow position: | chr16:25457591-25457904 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr16:29046895-29046583 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 187-503 |
| Cow position: | chr16:40296304-40296617 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 187-529 |
| Cow position: | chr16:10438109-10437773 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 188-445 |
| Cow position: | chr16:18498448-18498701 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 188-489 |
| Cow position: | chr16:43897399-43897697 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 188-503 |
| Cow position: | chr16:2727415-2727727 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-503 |
| Cow position: | chr16:26663624-26663310 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-514 |
| Cow position: | chr16:14665940-14666269 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-531 |
| Cow position: | chr16:26516545-26516890 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 168 |
| Conread position: | 189-505 |
| Cow position: | chr16:23983180-23982871 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 193-503 |
| Cow position: | chr16:27733919-27734231 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 194-528 |
| Cow position: | chr16:48915288-48915620 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 170 |
| Conread position: | 202-489 |
| Cow position: | chr16:28471249-28471528 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 202-520 |
| Cow position: | chr16:29033895-29033590 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 202-528 |
| Cow position: | chr16:15184649-15184340 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 208-412 |
| Cow position: | chr16:36231896-36232090 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 228-552 |
| Cow position: | chr16:47473397-47473088 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 268-513 |
| Cow position: | chr16:18687341-18687582 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 272-496 |
| Cow position: | chr16:36088631-36088851 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 346-550 |
| Cow position: | chr16:41756604-41756809 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 150, 27 |
Show alignments to all cow chromosomes.