Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 90-440 |
| Cow position: | chr17:2030692-2030339 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 163-505 |
| Cow position: | chr17:40805289-40804956 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 165-432 |
| Cow position: | chr17:23323987-23324253 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 165-491 |
| Cow position: | chr17:20087275-20087597 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 167-466 |
| Cow position: | chr17:15436256-15435960 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 48, 190 |
| Conread position: | 168-291 |
| Cow position: | chr17:25897488-25897360 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 168-327 |
| Cow position: | chr17:9080976-9081142 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 168-431 |
| Cow position: | chr17:11376320-11376582 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-432 |
| Cow position: | chr17:227844-228107 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-432 |
| Cow position: | chr17:6120175-6119909 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 168-432 |
| Cow position: | chr17:15142903-15143166 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 193 |
| Conread position: | 168-432 |
| Cow position: | chr17:34156592-34156329 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-441 |
| Cow position: | chr17:151407-151679 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 190 |
| Conread position: | 168-445 |
| Cow position: | chr17:1382355-1382626 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 118, 184 |
| Conread position: | 168-445 |
| Cow position: | chr17:2262567-2262290 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-458 |
| Cow position: | chr17:8209571-8209284 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 190 |
| Conread position: | 168-458 |
| Cow position: | chr17:14216569-14216848 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 168-458 |
| Cow position: | chr17:24782629-24782345 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 149 |
| Conread position: | 168-460 |
| Cow position: | chr17:31767575-31767866 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 168-499 |
| Cow position: | chr17:3708315-3708638 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 168-500 |
| Cow position: | chr17:22132700-22132370 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 179 |
| Conread position: | 168-503 |
| Cow position: | chr17:11087256-11087585 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 47, 187 |
| Conread position: | 168-504 |
| Cow position: | chr17:18299930-18300259 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 169-346 |
| Cow position: | chr17:20183892-20183709 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 169-513 |
| Cow position: | chr17:19020039-19019702 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 169-520 |
| Cow position: | chr17:14307601-14307949 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 169-525 |
| Cow position: | chr17:42265391-42265037 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 169-531 |
| Cow position: | chr17:2092293-2092671 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 171-432 |
| Cow position: | chr17:15156505-15156764 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 171-458 |
| Cow position: | chr17:20665264-20665548 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 171-498 |
| Cow position: | chr17:250628-250297 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 171-505 |
| Cow position: | chr17:2174340-2174020 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 172-444 |
| Cow position: | chr17:5227082-5226812 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 173-499 |
| Cow position: | chr17:3642370-3642697 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 173-499 |
| Cow position: | chr17:6069015-6068701 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 121, 179 |
| Conread position: | 175-440 |
| Cow position: | chr17:15324285-15324021 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 178-552 |
| Cow position: | chr17:15384738-15384369 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 187-441 |
| Cow position: | chr17:1880535-1880288 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 187-445 |
| Cow position: | chr17:4060550-4060291 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-500 |
| Cow position: | chr17:24029558-24029858 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 187-503 |
| Cow position: | chr17:2580067-2579754 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 187-503 |
| Cow position: | chr17:6260294-6259983 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr17:14894605-14894292 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 187-503 |
| Cow position: | chr17:15850849-15850536 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-508 |
| Cow position: | chr17:16857074-16857394 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 187-509 |
| Cow position: | chr17:14040585-14040898 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 193-410 |
| Cow position: | chr17:18194271-18194054 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 193-503 |
| Cow position: | chr17:18103244-18103546 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 211-431 |
| Cow position: | chr17:43952147-43952361 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 75, 141 |
| Conread position: | 213-505 |
| Cow position: | chr17:19268947-19269227 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 81, 139 |
| Conread position: | 230-525 |
| Cow position: | chr17:20488402-20488117 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 239-428 |
| Cow position: | chr17:14051722-14051905 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 284-505 |
| Cow position: | chr17:25738010-25737802 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.