Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 168-280 |
| Cow position: | chr19:40817049-40817161 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-350 |
| Cow position: | chr19:17019636-17019457 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 168-410 |
| Cow position: | chr19:5900818-5901059 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 169 |
| Conread position: | 168-422 |
| Cow position: | chr19:7342743-7342490 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 195 |
| Conread position: | 168-430 |
| Cow position: | chr19:136335-136590 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 168 |
| Conread position: | 168-430 |
| Cow position: | chr19:167924-168185 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-431 |
| Cow position: | chr19:20105389-20105125 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 168-458 |
| Cow position: | chr19:773271-772986 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 168-458 |
| Cow position: | chr19:28593938-28593654 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 168-458 |
| Cow position: | chr19:52151154-52151440 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr19:43144389-43144101 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-468 |
| Cow position: | chr19:32211397-32211696 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-492 |
| Cow position: | chr19:35385072-35385387 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 106 |
| Conread position: | 168-505 |
| Cow position: | chr19:39391187-39390859 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 168-525 |
| Cow position: | chr19:3138618-3138265 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 173 |
| Conread position: | 168-551 |
| Cow position: | chr19:27051838-27052214 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 163 |
| Conread position: | 168-554 |
| Cow position: | chr19:32182407-32182790 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 170-525 |
| Cow position: | chr19:35980819-35980486 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 171-517 |
| Cow position: | chr19:39668835-39669174 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 173-504 |
| Cow position: | chr19:75577-75904 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 42, 170 |
| Conread position: | 187-470 |
| Cow position: | chr19:204620-204338 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 170 |
| Conread position: | 187-487 |
| Cow position: | chr19:2273721-2274022 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 187-500 |
| Cow position: | chr19:40851776-40852084 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 168 |
| Conread position: | 187-503 |
| Cow position: | chr19:5729493-5729180 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 187-503 |
| Cow position: | chr19:7488975-7488664 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr19:33942262-33941961 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 187-530 |
| Cow position: | chr19:438778-439121 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 188-503 |
| Cow position: | chr19:33874087-33873777 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 189-382 |
| Cow position: | chr19:190077-189875 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 190-346 |
| Cow position: | chr19:40887088-40887250 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 193-498 |
| Cow position: | chr19:341878-341572 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 196-514 |
| Cow position: | chr19:10513842-10514148 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 146 |
| Conread position: | 202-502 |
| Cow position: | chr19:172848-172564 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 202-504 |
| Cow position: | chr19:28581017-28581311 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 202-510 |
| Cow position: | chr19:892965-893264 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 204-509 |
| Cow position: | chr19:352011-352311 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 94 |
| Conread position: | 211-505 |
| Cow position: | chr19:39184911-39185195 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 234-445 |
| Cow position: | chr19:38500-38295 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 266-460 |
| Cow position: | chr19:5208745-5208557 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 293-445 |
| Cow position: | chr19:4386167-4386018 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 372-500 |
| Cow position: | chr19:48861515-48861638 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 385-525 |
| Cow position: | chr19:35377629-35377490 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
Show alignments to all cow chromosomes.