Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 161-432 |
| Cow position: | chr20:823407-823137 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 196 |
| Conread position: | 163-523 |
| Cow position: | chr20:2790259-2790625 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 7, 180 |
| Conread position: | 168-348 |
| Cow position: | chr20:8974179-8974364 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 168-445 |
| Cow position: | chr20:19438563-19438296 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 168-460 |
| Cow position: | chr20:25961736-25961445 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr20:38351309-38351020 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 168-460 |
| Cow position: | chr20:42905843-42905561 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 168-549 |
| Cow position: | chr20:10854712-10855085 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 168-553 |
| Cow position: | chr20:18324547-18324917 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 169-552 |
| Cow position: | chr20:20753853-20754228 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 320, 81 |
| Conread position: | 171-502 |
| Cow position: | chr20:21914962-21914635 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 19, 184 |
| Conread position: | 171-503 |
| Cow position: | chr20:16179180-16179510 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 171-507 |
| Cow position: | chr20:13679406-13679738 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 171-507 |
| Cow position: | chr20:18963160-18963493 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 173-346 |
| Cow position: | chr20:12569153-12568973 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 173-489 |
| Cow position: | chr20:15097243-15097556 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 173-527 |
| Cow position: | chr20:8992588-8992943 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 174-517 |
| Cow position: | chr20:10840079-10840415 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 175-421 |
| Cow position: | chr20:22697899-22697656 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 187-427 |
| Cow position: | chr20:22716714-22716948 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 187-500 |
| Cow position: | chr20:8003608-8003915 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 29, 169 |
| Conread position: | 187-500 |
| Cow position: | chr20:13763525-13763215 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 187-503 |
| Cow position: | chr20:15292625-15292318 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 158 |
| Conread position: | 187-503 |
| Cow position: | chr20:23799505-23799193 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-503 |
| Cow position: | chr20:27869821-27869505 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 28, 189 |
| Conread position: | 187-503 |
| Cow position: | chr20:28564973-28565288 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 187-505 |
| Cow position: | chr20:28161389-28161078 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-508 |
| Cow position: | chr20:29949120-29948801 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-512 |
| Cow position: | chr20:35125117-35124793 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 171 |
| Conread position: | 187-531 |
| Cow position: | chr20:8216137-8215793 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 188-503 |
| Cow position: | chr20:5535555-5535245 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-503 |
| Cow position: | chr20:23469046-23469358 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 188-503 |
| Cow position: | chr20:30684940-30684628 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 192-500 |
| Cow position: | chr20:21394210-21393904 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 153 |
| Conread position: | 196-509 |
| Cow position: | chr20:37580684-37580381 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 202-484 |
| Cow position: | chr20:3271299-3271026 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 274, 91 |
| Conread position: | 202-503 |
| Cow position: | chr20:25850391-25850683 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 140 |
| Conread position: | 211-441 |
| Cow position: | chr20:7114895-7115119 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 79, 141 |
| Conread position: | 211-503 |
| Cow position: | chr20:12438172-12438453 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.