Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 163-503 |
| Cow position: | chr21:30599163-30599499 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 163-503 |
| Cow position: | chr21:35144521-35144183 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 163-535 |
| Cow position: | chr21:2711256-2710894 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 167-460 |
| Cow position: | chr21:37046373-37046081 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 48, 190 |
| Conread position: | 168-335 |
| Cow position: | chr21:26637446-26637618 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 168-432 |
| Cow position: | chr21:47949812-47949555 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 118, 152 |
| Conread position: | 168-442 |
| Cow position: | chr21:4077586-4077315 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 168-445 |
| Cow position: | chr21:2475789-2476065 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-445 |
| Cow position: | chr21:11406244-11406520 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-458 |
| Cow position: | chr21:37371997-37371711 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr21:4091400-4091110 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 47, 171 |
| Conread position: | 168-460 |
| Cow position: | chr21:11452906-11453195 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 168-460 |
| Cow position: | chr21:11506347-11506057 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 168-460 |
| Cow position: | chr21:12055249-12055540 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr21:39425813-39425524 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 152 |
| Conread position: | 168-477 |
| Cow position: | chr21:21518273-21517970 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 168-514 |
| Cow position: | chr21:21915440-21915100 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 168-531 |
| Cow position: | chr21:25976030-25975670 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 148 |
| Conread position: | 168-537 |
| Cow position: | chr21:4094255-4093888 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 168-572 |
| Cow position: | chr21:23812929-23812530 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 32, 169 |
| Conread position: | 171-431 |
| Cow position: | chr21:47941605-47941349 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 168 |
| Conread position: | 171-432 |
| Cow position: | chr21:1287471-1287729 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 171-487 |
| Cow position: | chr21:2416963-2416652 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 174 |
| Conread position: | 171-488 |
| Cow position: | chr21:28735985-28735669 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 171-506 |
| Cow position: | chr21:4589241-4589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 171-525 |
| Cow position: | chr21:23862074-23861726 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 173-458 |
| Cow position: | chr21:2511642-2511361 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 173-511 |
| Cow position: | chr21:21925569-21925908 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 170 |
| Conread position: | 177-433 |
| Cow position: | chr21:37148789-37148526 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 177-554 |
| Cow position: | chr21:23603288-23602915 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 186-506 |
| Cow position: | chr21:9892668-9892356 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 5, 108 |
| Conread position: | 187-426 |
| Cow position: | chr21:27070528-27070766 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr21:146662-146349 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr21:2883007-2883322 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 187-503 |
| Cow position: | chr21:3779508-3779193 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 187-503 |
| Cow position: | chr21:10567406-10567095 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 187-503 |
| Cow position: | chr21:27283125-27282812 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 187-503 |
| Cow position: | chr21:30562537-30562229 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 187-503 |
| Cow position: | chr21:40270941-40271254 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-537 |
| Cow position: | chr21:29810-29464 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 188-503 |
| Cow position: | chr21:33252238-33251932 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 189-494 |
| Cow position: | chr21:20743785-20744073 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 192-426 |
| Cow position: | chr21:18819440-18819668 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 192-522 |
| Cow position: | chr21:360094-359774 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 140 |
| Conread position: | 193-505 |
| Cow position: | chr21:31558926-31559229 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 194-507 |
| Cow position: | chr21:7266799-7267112 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 199-503 |
| Cow position: | chr21:10850800-10850504 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 200-500 |
| Cow position: | chr21:1689501-1689797 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 99, 130 |
| Conread position: | 204-534 |
| Cow position: | chr21:12803340-12803667 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 208-460 |
| Cow position: | chr21:26650748-26650502 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 125 |
| Conread position: | 211-486 |
| Cow position: | chr21:13313478-13313208 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 125 |
| Conread position: | 212-503 |
| Cow position: | chr21:48116810-48116528 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 117 |
| Conread position: | 246-460 |
| Cow position: | chr21:46916251-46916048 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 250-460 |
| Cow position: | chr21:6340230-6340027 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 374-552 |
| Cow position: | chr21:37293123-37292941 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 53 |
Show alignments to all cow chromosomes.