Cow genome map

Conread name: Ss1.1-Pig4-TMW8027I19.5

Conread position: 163-503
Cow position: chr21:30599163-30599499 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 195

Conread position: 163-503
Cow position: chr21:35144521-35144183 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 7

Conread position: 163-535
Cow position: chr21:2711256-2710894 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 254
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 18, 107

Conread position: 167-460
Cow position: chr21:37046373-37046081 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 190

Conread position: 168-335
Cow position: chr21:26637446-26637618 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 102

Conread position: 168-432
Cow position: chr21:47949812-47949555 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 118, 152

Conread position: 168-442
Cow position: chr21:4077586-4077315 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 161

Conread position: 168-445
Cow position: chr21:2475789-2476065 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 47, 168

Conread position: 168-445
Cow position: chr21:11406244-11406520 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 168

Conread position: 168-458
Cow position: chr21:37371997-37371711 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr21:4091400-4091110 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 47, 171

Conread position: 168-460
Cow position: chr21:11452906-11453195 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 47, 166

Conread position: 168-460
Cow position: chr21:11506347-11506057 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 46, 188

Conread position: 168-460
Cow position: chr21:12055249-12055540 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr21:39425813-39425524 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 152

Conread position: 168-477
Cow position: chr21:21518273-21517970 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 36

Conread position: 168-514
Cow position: chr21:21915440-21915100 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 105

Conread position: 168-531
Cow position: chr21:25976030-25975670 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 148

Conread position: 168-537
Cow position: chr21:4094255-4093888 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 10

Conread position: 168-572
Cow position: chr21:23812929-23812530 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 273
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 32, 169

Conread position: 171-431
Cow position: chr21:47941605-47941349 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 168

Conread position: 171-432
Cow position: chr21:1287471-1287729 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 163

Conread position: 171-487
Cow position: chr21:2416963-2416652 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 174

Conread position: 171-488
Cow position: chr21:28735985-28735669 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 103

Conread position: 171-506
Cow position: chr21:4589241-4589568 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 229
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 83, 25

Conread position: 171-525
Cow position: chr21:23862074-23861726 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 42, 30

Conread position: 173-458
Cow position: chr21:2511642-2511361 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 42, 184

Conread position: 173-511
Cow position: chr21:21925569-21925908 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 170

Conread position: 177-433
Cow position: chr21:37148789-37148526 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 15, 32

Conread position: 177-554
Cow position: chr21:23603288-23602915 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 54

Conread position: 186-506
Cow position: chr21:9892668-9892356 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 5, 108

Conread position: 187-426
Cow position: chr21:27070528-27070766 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 28, 170

Conread position: 187-503
Cow position: chr21:146662-146349 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 170

Conread position: 187-503
Cow position: chr21:2883007-2883322 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 159

Conread position: 187-503
Cow position: chr21:3779508-3779193 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 146

Conread position: 187-503
Cow position: chr21:10567406-10567095 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 156

Conread position: 187-503
Cow position: chr21:27283125-27282812 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 23, 173

Conread position: 187-503
Cow position: chr21:30562537-30562229 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 29

Conread position: 187-503
Cow position: chr21:40270941-40271254 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 28, 170

Conread position: 187-537
Cow position: chr21:29810-29464 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 235
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 88

Conread position: 188-503
Cow position: chr21:33252238-33251932 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 99

Conread position: 189-494
Cow position: chr21:20743785-20744073 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 10, 21

Conread position: 192-426
Cow position: chr21:18819440-18819668 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 46

Conread position: 192-522
Cow position: chr21:360094-359774 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 140

Conread position: 193-505
Cow position: chr21:31558926-31559229 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 23, 164

Conread position: 194-507
Cow position: chr21:7266799-7267112 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 21, 141

Conread position: 199-503
Cow position: chr21:10850800-10850504 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 154

Conread position: 200-500
Cow position: chr21:1689501-1689797 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 197
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 99, 130

Conread position: 204-534
Cow position: chr21:12803340-12803667 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 63, 139

Conread position: 208-460
Cow position: chr21:26650748-26650502 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 125

Conread position: 211-486
Cow position: chr21:13313478-13313208 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 125

Conread position: 212-503
Cow position: chr21:48116810-48116528 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 83, 117

Conread position: 246-460
Cow position: chr21:46916251-46916048 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 250-460
Cow position: chr21:6340230-6340027 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 8

Conread position: 374-552
Cow position: chr21:37293123-37292941 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 102, 53

Show alignments to all cow chromosomes.