Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 97-225 |
| Cow position: | chr22:3388938-3388809 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 168-344 |
| Cow position: | chr22:42989141-42988958 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-346 |
| Cow position: | chr22:14629996-14629811 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 168-387 |
| Cow position: | chr22:291573-291797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 213 |
| Conread position: | 168-427 |
| Cow position: | chr22:537678-537422 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 168-445 |
| Cow position: | chr22:27284610-27284335 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-458 |
| Cow position: | chr22:694203-693916 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 46, 190 |
| Conread position: | 168-458 |
| Cow position: | chr22:3277777-3278063 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 47, 109 |
| Conread position: | 168-458 |
| Cow position: | chr22:6021240-6020956 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 187 |
| Conread position: | 168-458 |
| Cow position: | chr22:18027859-18027572 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 168-458 |
| Cow position: | chr22:20240265-20240549 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-458 |
| Cow position: | chr22:27309198-27309480 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 189 |
| Conread position: | 168-458 |
| Cow position: | chr22:35671777-35672063 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 37, 168 |
| Conread position: | 168-458 |
| Cow position: | chr22:44369048-44369332 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-473 |
| Cow position: | chr22:5232702-5233007 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 47, 190 |
| Conread position: | 168-498 |
| Cow position: | chr22:24950675-24950350 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-525 |
| Cow position: | chr22:6502554-6502904 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 168-551 |
| Cow position: | chr22:13918419-13918023 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 48, 212 |
| Conread position: | 168-552 |
| Cow position: | chr22:11032332-11031952 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 168-552 |
| Cow position: | chr22:36551876-36552252 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 121 |
| Conread position: | 169-340 |
| Cow position: | chr22:36590920-36591093 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 169-460 |
| Cow position: | chr22:16814464-16814174 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 169-522 |
| Cow position: | chr22:3305816-3306170 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 177 |
| Conread position: | 169-536 |
| Cow position: | chr22:23854234-23853880 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 151 |
| Conread position: | 170-460 |
| Cow position: | chr22:12731092-12731381 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 171-443 |
| Cow position: | chr22:8739637-8739908 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 171 |
| Conread position: | 171-458 |
| Cow position: | chr22:10909259-10909540 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 171-470 |
| Cow position: | chr22:326592-326886 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 171-489 |
| Cow position: | chr22:18815803-18816119 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 44, 176 |
| Conread position: | 171-492 |
| Cow position: | chr22:44352409-44352713 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 171-520 |
| Cow position: | chr22:35906815-35907159 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 171-547 |
| Cow position: | chr22:5940715-5941081 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 172-468 |
| Cow position: | chr22:1879367-1879073 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 173-407 |
| Cow position: | chr22:35942207-35942436 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 42, 148 |
| Conread position: | 173-500 |
| Cow position: | chr22:525114-525436 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 173-503 |
| Cow position: | chr22:560128-560451 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 173-550 |
| Cow position: | chr22:36580227-36580602 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 187-445 |
| Cow position: | chr22:44934543-44934286 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-480 |
| Cow position: | chr22:48005103-48004808 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 27, 161 |
| Conread position: | 187-496 |
| Cow position: | chr22:21589896-21589587 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 187-503 |
| Cow position: | chr22:15313390-15313698 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 187-503 |
| Cow position: | chr22:17328173-17328485 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 187-503 |
| Cow position: | chr22:31313905-31313593 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-503 |
| Cow position: | chr22:34168897-34168585 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr22:36860967-36861276 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr22:42991738-42991426 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 187-537 |
| Cow position: | chr22:36269795-36269443 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 189 |
| Conread position: | 188-503 |
| Cow position: | chr22:44397008-44396696 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 169 |
| Conread position: | 189-510 |
| Cow position: | chr22:11781589-11781911 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 189-553 |
| Cow position: | chr22:37132984-37132620 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 185 |
| Conread position: | 192-553 |
| Cow position: | chr22:1269234-1269598 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 193-474 |
| Cow position: | chr22:5308661-5308381 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 202-503 |
| Cow position: | chr22:31334491-31334784 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 154 |
| Conread position: | 202-503 |
| Cow position: | chr22:39468975-39469269 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 88, 151 |
| Conread position: | 211-445 |
| Cow position: | chr22:46581057-46581285 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 120 |
| Conread position: | 211-514 |
| Cow position: | chr22:19143154-19143446 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 145 |
| Conread position: | 211-537 |
| Cow position: | chr22:1322659-1322342 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 226-511 |
| Cow position: | chr22:41239608-41239324 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 246-550 |
| Cow position: | chr22:8876113-8875809 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 247-509 |
| Cow position: | chr22:14207914-14208169 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 270-553 |
| Cow position: | chr22:8148000-8148280 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 271-552 |
| Cow position: | chr22:13736087-13736357 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 144, 79 |
| Conread position: | 337-506 |
| Cow position: | chr22:2395618-2395783 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.