Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 163-525 |
| Cow position: | chr24:6084741-6084377 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 198 |
| Conread position: | 165-521 |
| Cow position: | chr24:27735150-27734820 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 167-470 |
| Cow position: | chr24:14389888-14390189 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 48, 169 |
| Conread position: | 168-412 |
| Cow position: | chr24:23505201-23505440 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 168-426 |
| Cow position: | chr24:14754335-14754593 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 193 |
| Conread position: | 168-432 |
| Cow position: | chr24:44018198-44017935 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-444 |
| Cow position: | chr24:33738674-33738950 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 168-445 |
| Cow position: | chr24:7062059-7061783 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-445 |
| Cow position: | chr24:12484653-12484929 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-458 |
| Cow position: | chr24:5992561-5992850 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 190 |
| Conread position: | 168-458 |
| Cow position: | chr24:13188838-13188552 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr24:9188070-9188358 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 168-460 |
| Cow position: | chr24:22793841-22793546 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr24:29305657-29305949 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 168-460 |
| Cow position: | chr24:40549530-40549247 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-468 |
| Cow position: | chr24:43814428-43814130 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-480 |
| Cow position: | chr24:6024440-6024749 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-485 |
| Cow position: | chr24:33934038-33933720 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 48, 195 |
| Conread position: | 168-511 |
| Cow position: | chr24:6538623-6538288 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 42 |
| Conread position: | 168-525 |
| Cow position: | chr24:16472566-16472212 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 190 |
| Conread position: | 168-525 |
| Cow position: | chr24:16648312-16648672 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 177 |
| Conread position: | 168-525 |
| Cow position: | chr24:36559091-36559443 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 168-551 |
| Cow position: | chr24:14872293-14872679 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 176 |
| Conread position: | 168-552 |
| Cow position: | chr24:6049244-6048868 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 169-441 |
| Cow position: | chr24:12796559-12796815 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 169-444 |
| Cow position: | chr24:1449909-1449650 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 169-464 |
| Cow position: | chr24:6646366-6646072 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 190 |
| Conread position: | 170-504 |
| Cow position: | chr24:6336507-6336188 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 45 |
| Conread position: | 171-424 |
| Cow position: | chr24:6059560-6059291 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 171-433 |
| Cow position: | chr24:6659833-6660094 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 171-501 |
| Cow position: | chr24:6669483-6669808 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 173-425 |
| Cow position: | chr24:23184801-23185053 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 187 |
| Conread position: | 173-503 |
| Cow position: | chr24:29187949-29187623 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 177-503 |
| Cow position: | chr24:17696315-17696638 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 94 |
| Conread position: | 182-512 |
| Cow position: | chr24:13301871-13302211 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 140 |
| Conread position: | 186-503 |
| Cow position: | chr24:22971740-22971430 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 171 |
| Conread position: | 187-474 |
| Cow position: | chr24:12086849-12086566 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 187-501 |
| Cow position: | chr24:12130328-12130632 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 107, 145 |
| Conread position: | 187-503 |
| Cow position: | chr24:147962-148279 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 174 |
| Conread position: | 187-503 |
| Cow position: | chr24:12335114-12335435 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 179 |
| Conread position: | 187-503 |
| Cow position: | chr24:19834038-19833725 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-552 |
| Cow position: | chr24:12237892-12237514 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 192-531 |
| Cow position: | chr24:14334111-14333773 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 193-499 |
| Cow position: | chr24:4414888-4415189 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 211-517 |
| Cow position: | chr24:12232364-12232652 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 222-549 |
| Cow position: | chr24:7090556-7090877 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 229-460 |
| Cow position: | chr24:6434835-6434612 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 240-360 |
| Cow position: | chr24:37064616-37064738 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 240-460 |
| Cow position: | chr24:8030739-8030525 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 258-445 |
| Cow position: | chr24:16084086-16084266 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 345-512 |
| Cow position: | chr24:32332515-32332351 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 347-552 |
| Cow position: | chr24:13533038-13533242 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 28 |
Show alignments to all cow chromosomes.