Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 168-319 |
| Cow position: | chr29:32559166-32559324 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 168-380 |
| Cow position: | chr29:251367-251144 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 216 |
| Conread position: | 168-426 |
| Cow position: | chr29:27980333-27980591 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-432 |
| Cow position: | chr29:610027-610286 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 168-458 |
| Cow position: | chr29:669469-669754 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 168-460 |
| Cow position: | chr29:7844920-7844629 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr29:15894261-15894552 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-460 |
| Cow position: | chr29:15968272-15968563 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 46, 193 |
| Conread position: | 168-460 |
| Cow position: | chr29:18856355-18856642 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 168-460 |
| Cow position: | chr29:27249754-27250044 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 168-460 |
| Cow position: | chr29:31181993-31181713 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 168-460 |
| Cow position: | chr29:34926067-34925777 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 47, 170 |
| Conread position: | 168-480 |
| Cow position: | chr29:35297459-35297147 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-526 |
| Cow position: | chr29:16174292-16174644 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 168-534 |
| Cow position: | chr29:16016185-16016546 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 168-537 |
| Cow position: | chr29:4633802-4634170 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 170, 45 |
| Conread position: | 168-552 |
| Cow position: | chr29:105631-105235 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 214 |
| Conread position: | 169-426 |
| Cow position: | chr29:5958192-5957938 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 169-462 |
| Cow position: | chr29:19885657-19885368 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 169-494 |
| Cow position: | chr29:802338-802655 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 173 |
| Conread position: | 169-522 |
| Cow position: | chr29:15948957-15949305 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 171-405 |
| Cow position: | chr29:7857089-7856863 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 171-432 |
| Cow position: | chr29:13582648-13582394 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 170 |
| Conread position: | 171-496 |
| Cow position: | chr29:9643172-9643488 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 113, 181 |
| Conread position: | 171-500 |
| Cow position: | chr29:21426437-21426763 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 168 |
| Conread position: | 171-503 |
| Cow position: | chr29:26164230-26164558 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 172-394 |
| Cow position: | chr29:3046216-3045997 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 173-503 |
| Cow position: | chr29:2690491-2690164 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 173-554 |
| Cow position: | chr29:8061906-8062286 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 187 |
| Conread position: | 180-413 |
| Cow position: | chr29:9620000-9619769 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 180-503 |
| Cow position: | chr29:409944-410261 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 187-441 |
| Cow position: | chr29:2950696-2950945 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 187-492 |
| Cow position: | chr29:45586791-45587096 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 187-498 |
| Cow position: | chr29:39079135-39079445 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 187-499 |
| Cow position: | chr29:34799234-34799543 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 21, 168 |
| Conread position: | 187-499 |
| Cow position: | chr29:40502407-40502718 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-500 |
| Cow position: | chr29:43323130-43322821 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr29:47896-48216 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr29:2840800-2841109 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr29:6265927-6266237 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 187-503 |
| Cow position: | chr29:10823399-10823705 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 187-503 |
| Cow position: | chr29:16023109-16022794 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 187-503 |
| Cow position: | chr29:19622671-19622983 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 187-503 |
| Cow position: | chr29:20251735-20251423 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr29:23976411-23976104 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 187-503 |
| Cow position: | chr29:38227556-38227244 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-528 |
| Cow position: | chr29:45460292-45459956 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 189-458 |
| Cow position: | chr29:16110983-16110719 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 189-463 |
| Cow position: | chr29:19597684-19597952 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 192-503 |
| Cow position: | chr29:7430647-7430955 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 193-523 |
| Cow position: | chr29:36598021-36598361 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 193-552 |
| Cow position: | chr29:5982147-5982496 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 198-499 |
| Cow position: | chr29:25931983-25932280 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 202-430 |
| Cow position: | chr29:21459850-21459617 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 202-500 |
| Cow position: | chr29:10647694-10647984 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 202-552 |
| Cow position: | chr29:14085579-14085919 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 66 |
| Conread position: | 211-430 |
| Cow position: | chr29:14586463-14586250 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 131 |
| Conread position: | 211-500 |
| Cow position: | chr29:42802674-42802392 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 211-503 |
| Cow position: | chr29:2100393-2100109 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 84, 141 |
| Conread position: | 211-505 |
| Cow position: | chr29:32540356-32540074 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 123 |
| Conread position: | 228-528 |
| Cow position: | chr29:6213067-6212763 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 143 |
| Conread position: | 240-500 |
| Cow position: | chr29:42650785-42650532 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 93 |
Show alignments to all cow chromosomes.