Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 165-538 |
| Cow position: | chr4:19251868-19251508 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 168-327 |
| Cow position: | chr4:159465-159301 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 168-346 |
| Cow position: | chr4:62568741-62568560 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 168-427 |
| Cow position: | chr4:41954785-41954527 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-427 |
| Cow position: | chr4:41958440-41958182 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-430 |
| Cow position: | chr4:6268316-6268581 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 168-432 |
| Cow position: | chr4:27295193-27295463 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 179 |
| Conread position: | 168-458 |
| Cow position: | chr4:1930313-1930598 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-458 |
| Cow position: | chr4:3126107-3125821 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 189 |
| Conread position: | 168-458 |
| Cow position: | chr4:5880477-5880191 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 76, 189 |
| Conread position: | 168-458 |
| Cow position: | chr4:16056912-16056627 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-458 |
| Cow position: | chr4:18424213-18424499 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 47, 171 |
| Conread position: | 168-460 |
| Cow position: | chr4:4416386-4416103 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 152 |
| Conread position: | 168-460 |
| Cow position: | chr4:13548340-13548050 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 168-460 |
| Cow position: | chr4:16326463-16326754 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-469 |
| Cow position: | chr4:9354465-9354764 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 168-487 |
| Cow position: | chr4:18190717-18190399 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-497 |
| Cow position: | chr4:32212479-32212156 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 171 |
| Conread position: | 168-507 |
| Cow position: | chr4:26886543-26886878 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-525 |
| Cow position: | chr4:14821238-14821584 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 168-548 |
| Cow position: | chr4:4177107-4176730 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 168-549 |
| Cow position: | chr4:19093736-19093356 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 168-550 |
| Cow position: | chr4:44925203-44925585 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 168-551 |
| Cow position: | chr4:54158945-54158584 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 168-552 |
| Cow position: | chr4:1496079-1496457 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 47 |
| Conread position: | 171-327 |
| Cow position: | chr4:529708-529544 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 171-485 |
| Cow position: | chr4:16360197-16359883 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 171-497 |
| Cow position: | chr4:100625-100944 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 171-553 |
| Cow position: | chr4:34184217-34184592 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 173-431 |
| Cow position: | chr4:13493625-13493365 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 197 |
| Conread position: | 173-433 |
| Cow position: | chr4:33072514-33072773 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 173-503 |
| Cow position: | chr4:31564995-31565317 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 173-516 |
| Cow position: | chr4:968336-968681 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 175 |
| Conread position: | 173-536 |
| Cow position: | chr4:13870323-13869971 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 176-506 |
| Cow position: | chr4:43881419-43881095 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 39, 181 |
| Conread position: | 176-552 |
| Cow position: | chr4:28831652-28831280 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 183 |
| Conread position: | 177-525 |
| Cow position: | chr4:60263855-60264195 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 36, 168 |
| Conread position: | 177-550 |
| Cow position: | chr4:22472833-22472465 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 187-415 |
| Cow position: | chr4:57984280-57984053 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 174 |
| Conread position: | 187-445 |
| Cow position: | chr4:18517192-18516938 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 187-489 |
| Cow position: | chr4:44725383-44725083 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 187-499 |
| Cow position: | chr4:25599203-25599515 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 158 |
| Conread position: | 187-503 |
| Cow position: | chr4:6490067-6490378 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 168 |
| Conread position: | 187-503 |
| Cow position: | chr4:36896667-36896354 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr4:43319347-43319660 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 170 |
| Conread position: | 187-503 |
| Cow position: | chr4:45048999-45049312 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 29, 174 |
| Conread position: | 187-503 |
| Cow position: | chr4:48026698-48026383 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 187-505 |
| Cow position: | chr4:41120615-41120290 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 28, 200 |
| Conread position: | 188-506 |
| Cow position: | chr4:14374376-14374690 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 190-522 |
| Cow position: | chr4:51042960-51043283 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 192-468 |
| Cow position: | chr4:11111128-11111404 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 193-503 |
| Cow position: | chr4:356200-355896 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 194-521 |
| Cow position: | chr4:43454961-43454639 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 198-503 |
| Cow position: | chr4:31669555-31669258 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 96, 154 |
| Conread position: | 199-517 |
| Cow position: | chr4:46664799-46664484 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 202-503 |
| Cow position: | chr4:17925975-17926268 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 91, 132 |
| Conread position: | 215-418 |
| Cow position: | chr4:12607406-12607601 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 121 |
| Conread position: | 216-551 |
| Cow position: | chr4:42548489-42548165 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 228-445 |
| Cow position: | chr4:21256602-21256390 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 229-503 |
| Cow position: | chr4:12587551-12587285 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 240-502 |
| Cow position: | chr4:12240976-12241231 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 244-500 |
| Cow position: | chr4:33494062-33493814 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 250-553 |
| Cow position: | chr4:11385969-11385681 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 278, 78 |
| Conread position: | 265-460 |
| Cow position: | chr4:65223324-65223513 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 346-499 |
| Cow position: | chr4:47254860-47255008 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 397-523 |
| Cow position: | chr4:54188255-54188132 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 38 |
Show alignments to all cow chromosomes.