Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 162-424 |
| Cow position: | chr5:41555199-41555456 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 170 |
| Conread position: | 163-496 |
| Cow position: | chr5:59061029-59060703 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 194 |
| Conread position: | 163-503 |
| Cow position: | chr5:54792221-54792554 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 165-509 |
| Cow position: | chr5:46660447-46660115 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 168-309 |
| Cow position: | chr5:26343407-26343260 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 168-327 |
| Cow position: | chr5:47830662-47830827 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 168-347 |
| Cow position: | chr5:3113854-3113674 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 168-364 |
| Cow position: | chr5:241608-241404 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-410 |
| Cow position: | chr5:18664198-18663957 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-425 |
| Cow position: | chr5:46645089-46644833 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-432 |
| Cow position: | chr5:35300505-35300242 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-442 |
| Cow position: | chr5:18401294-18401565 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 168-445 |
| Cow position: | chr5:3964856-3964582 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-445 |
| Cow position: | chr5:44459889-44459613 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-445 |
| Cow position: | chr5:46776485-46776209 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-445 |
| Cow position: | chr5:48467874-48468149 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 168-445 |
| Cow position: | chr5:51770535-51770813 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 188 |
| Conread position: | 168-458 |
| Cow position: | chr5:10843011-10843299 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 168-460 |
| Cow position: | chr5:4089477-4089186 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 168-460 |
| Cow position: | chr5:10483254-10482963 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-460 |
| Cow position: | chr5:10775858-10776149 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr5:14380549-14380264 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr5:18666400-18666109 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr5:23959909-23960200 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr5:27908866-27909157 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 168-460 |
| Cow position: | chr5:32772899-32772597 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 218 |
| Conread position: | 168-460 |
| Cow position: | chr5:54931813-54932103 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 168-478 |
| Cow position: | chr5:31706981-31706677 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 168-496 |
| Cow position: | chr5:6588613-6588935 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 143 |
| Conread position: | 168-529 |
| Cow position: | chr5:35526219-35525874 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 169-460 |
| Cow position: | chr5:46664402-46664118 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 170-415 |
| Cow position: | chr5:59144768-59144531 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 171-432 |
| Cow position: | chr5:12643316-12643576 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 165 |
| Conread position: | 171-458 |
| Cow position: | chr5:4018796-4019078 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 171-500 |
| Cow position: | chr5:4385647-4385330 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 25, 181 |
| Conread position: | 171-526 |
| Cow position: | chr5:41956924-41957278 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 171-547 |
| Cow position: | chr5:28023919-28023546 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 178 |
| Conread position: | 172-315 |
| Cow position: | chr5:32946560-32946410 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 172-520 |
| Cow position: | chr5:14784959-14785317 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 43, 215 |
| Conread position: | 173-362 |
| Cow position: | chr5:2531662-2531464 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 173-458 |
| Cow position: | chr5:18122069-18122348 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 173-511 |
| Cow position: | chr5:10919227-10918892 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 163 |
| Conread position: | 173-517 |
| Cow position: | chr5:56856786-56857124 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 185-484 |
| Cow position: | chr5:31101235-31101530 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 187-377 |
| Cow position: | chr5:29761939-29761753 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 187-425 |
| Cow position: | chr5:48808347-48808578 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 187-441 |
| Cow position: | chr5:4069608-4069355 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 187-444 |
| Cow position: | chr5:24099060-24098805 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 187-499 |
| Cow position: | chr5:64781624-64781937 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 174 |
| Conread position: | 187-502 |
| Cow position: | chr5:7274219-7273909 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 187-503 |
| Cow position: | chr5:415329-415641 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 29, 169 |
| Conread position: | 187-503 |
| Cow position: | chr5:30579718-30579403 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 187-503 |
| Cow position: | chr5:37732739-37732427 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 187-503 |
| Cow position: | chr5:55628379-55628067 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 24, 170 |
| Conread position: | 187-503 |
| Cow position: | chr5:57482151-57482465 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 187-503 |
| Cow position: | chr5:73489167-73489480 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-552 |
| Cow position: | chr5:23229079-23228686 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 207 |
| Conread position: | 187-579 |
| Cow position: | chr5:27002419-27002038 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 147 |
| Conread position: | 188-499 |
| Cow position: | chr5:46738187-46738495 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 192-433 |
| Cow position: | chr5:3786313-3786074 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 193-553 |
| Cow position: | chr5:41528372-41528736 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 195-460 |
| Cow position: | chr5:26078847-26079105 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 198-445 |
| Cow position: | chr5:34696975-34696738 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 76 |
| Conread position: | 202-502 |
| Cow position: | chr5:3503731-3504023 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 140 |
| Conread position: | 202-503 |
| Cow position: | chr5:2914818-2914529 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 205-445 |
| Cow position: | chr5:59482616-59482384 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 210-551 |
| Cow position: | chr5:41357728-41358056 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 212-500 |
| Cow position: | chr5:49118918-49119197 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 83, 34 |
| Conread position: | 213-440 |
| Cow position: | chr5:33186848-33186623 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 81, 103 |
| Conread position: | 226-342 |
| Cow position: | chr5:24107897-24108015 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 240-426 |
| Cow position: | chr5:5667722-5667901 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 240-503 |
| Cow position: | chr5:6154885-6155140 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 241-431 |
| Cow position: | chr5:43003426-43003245 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 94 |
| Conread position: | 244-505 |
| Cow position: | chr5:32309279-32309533 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 245-460 |
| Cow position: | chr5:24577238-24577030 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 252-552 |
| Cow position: | chr5:39246688-39246983 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 259-433 |
| Cow position: | chr5:28950650-28950826 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 365-512 |
| Cow position: | chr5:25000007-25000148 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.