Cow genome map

Conread name: Ss1.1-Pig4-TMW8027I19.5

Conread position: 47-500
Cow position: chr6:35419192-35419627 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 291
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 94, 23

Conread position: 163-433
Cow position: chr6:27471159-27470888 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 185

Conread position: 163-442
Cow position: chr6:64715788-64715511 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 25

Conread position: 163-445
Cow position: chr6:3888925-3889208 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 198

Conread position: 168-326
Cow position: chr6:6475324-6475483 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 134

Conread position: 168-344
Cow position: chr6:185921-186104 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 168-421
Cow position: chr6:38233384-38233136 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 159

Conread position: 168-422
Cow position: chr6:1411395-1411648 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 189

Conread position: 168-432
Cow position: chr6:10499176-10499439 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 47, 168

Conread position: 168-432
Cow position: chr6:16052428-16052164 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 190

Conread position: 168-432
Cow position: chr6:27170128-27169866 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 98

Conread position: 168-432
Cow position: chr6:28063883-28063621 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 74

Conread position: 168-432
Cow position: chr6:44032340-44032077 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 193

Conread position: 168-433
Cow position: chr6:26670320-26670583 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 46, 167

Conread position: 168-433
Cow position: chr6:43793161-43793426 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 37, 149

Conread position: 168-441
Cow position: chr6:7140914-7141193 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 213

Conread position: 168-441
Cow position: chr6:40315936-40315666 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 40, 167

Conread position: 168-445
Cow position: chr6:12665771-12666041 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 168

Conread position: 168-458
Cow position: chr6:13847574-13847287 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 190

Conread position: 168-458
Cow position: chr6:39909075-39908789 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 189

Conread position: 168-458
Cow position: chr6:68027338-68027054 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr6:24322833-24323124 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 168

Conread position: 168-460
Cow position: chr6:40252209-40251920 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr6:40275636-40275345 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 47, 168

Conread position: 168-460
Cow position: chr6:43618263-43617972 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr6:69221662-69221953 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 47, 168

Conread position: 168-478
Cow position: chr6:2375249-2374945 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 189

Conread position: 168-485
Cow position: chr6:330918-331234 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 47, 168

Conread position: 168-488
Cow position: chr6:28105305-28105619 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 131

Conread position: 168-496
Cow position: chr6:65821571-65821899 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 172

Conread position: 168-501
Cow position: chr6:66542194-66541854 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 317

Conread position: 168-503
Cow position: chr6:8202291-8201960 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 45, 189

Conread position: 168-526
Cow position: chr6:15477459-15477098 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 259
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 47, 102

Conread position: 168-548
Cow position: chr6:33899675-33900052 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 244
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 40

Conread position: 168-550
Cow position: chr6:38900617-38900998 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 67

Conread position: 168-551
Cow position: chr6:2887735-2887338 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 266
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 48, 168

Conread position: 168-552
Cow position: chr6:31565643-31566040 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 219

Conread position: 171-426
Cow position: chr6:65914742-65914493 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 80

Conread position: 171-445
Cow position: chr6:14852032-14852305 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 174

Conread position: 171-445
Cow position: chr6:58027299-58027031 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 44, 166

Conread position: 171-458
Cow position: chr6:17597746-17598017 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 21

Conread position: 171-498
Cow position: chr6:65928516-65928189 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 187

Conread position: 171-503
Cow position: chr6:3277401-3277727 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 22, 73

Conread position: 171-505
Cow position: chr6:1099632-1099963 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 227
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 45, 163

Conread position: 171-506
Cow position: chr6:12530033-12529709 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 157

Conread position: 173-433
Cow position: chr6:25794316-25794059 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 100

Conread position: 173-458
Cow position: chr6:13104598-13104320 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 42, 10

Conread position: 173-458
Cow position: chr6:13944450-13944169 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 42, 166

Conread position: 173-494
Cow position: chr6:44150013-44150330 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 36, 184

Conread position: 173-500
Cow position: chr6:52693571-52693249 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 62

Conread position: 173-503
Cow position: chr6:55543776-55544104 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 42, 184

Conread position: 174-445
Cow position: chr6:538533-538263 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 117, 41

Conread position: 176-550
Cow position: chr6:34025796-34025444 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 122

Conread position: 177-460
Cow position: chr6:10631600-10631315 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 137

Conread position: 177-549
Cow position: chr6:31637021-31637373 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 40

Conread position: 178-345
Cow position: chr6:6544756-6544581 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 98

Conread position: 180-501
Cow position: chr6:8021455-8021148 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 155, 35

Conread position: 187-346
Cow position: chr6:3487890-3488054 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 149

Conread position: 187-409
Cow position: chr6:40813137-40813357 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 169

Conread position: 187-416
Cow position: chr6:185254-185481 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 29, 128

Conread position: 187-439
Cow position: chr6:11724578-11724826 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 28

Conread position: 187-461
Cow position: chr6:51086474-51086202 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 27, 86

Conread position: 187-474
Cow position: chr6:28275512-28275227 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 155

Conread position: 187-499
Cow position: chr6:17046589-17046278 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 28, 170

Conread position: 187-501
Cow position: chr6:47042663-47042976 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 21, 174

Conread position: 187-503
Cow position: chr6:5949245-5949556 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 28, 170

Conread position: 187-503
Cow position: chr6:8760770-8761082 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 28, 100

Conread position: 187-503
Cow position: chr6:15140650-15140957 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 152

Conread position: 187-503
Cow position: chr6:27529472-27529784 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 174

Conread position: 187-503
Cow position: chr6:29312027-29311714 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 170

Conread position: 187-503
Cow position: chr6:30274648-30274956 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 108, 167

Conread position: 187-503
Cow position: chr6:34892470-34892783 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 158

Conread position: 187-503
Cow position: chr6:36526584-36526269 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 158

Conread position: 187-508
Cow position: chr6:1822098-1822417 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 28, 170

Conread position: 188-439
Cow position: chr6:66232344-66232096 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 85

Conread position: 188-503
Cow position: chr6:20560578-20560889 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 27, 169

Conread position: 189-503
Cow position: chr6:35876182-35876495 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 174

Conread position: 192-503
Cow position: chr6:39438076-39437770 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 24, 164

Conread position: 192-552
Cow position: chr6:10644078-10643714 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 166

Conread position: 193-445
Cow position: chr6:30479633-30479381 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 168

Conread position: 193-500
Cow position: chr6:6567122-6566831 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 19, 103

Conread position: 199-507
Cow position: chr6:40867042-40867342 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 142

Conread position: 199-513
Cow position: chr6:25214778-25214463 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 17, 158

Conread position: 200-552
Cow position: chr6:60168660-60169004 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 42

Conread position: 202-497
Cow position: chr6:13316992-13317278 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 101

Conread position: 202-503
Cow position: chr6:15280042-15280329 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 92, 129

Conread position: 202-508
Cow position: chr6:65842100-65841807 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 63

Conread position: 202-533
Cow position: chr6:33994812-33995135 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 218
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 24

Conread position: 213-526
Cow position: chr6:65881410-65881107 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 139

Conread position: 240-496
Cow position: chr6:3544961-3544711 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 55, 25

Conread position: 240-550
Cow position: chr6:44550614-44550922 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 58, 99

Conread position: 265-527
Cow position: chr6:17245104-17245356 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 87

Conread position: 359-553
Cow position: chr6:6543865-6543676 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 143, 16

Show alignments to all cow chromosomes.