Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 | 
| Conread position: | 47-500 | 
| Cow position: | chr6:35419192-35419627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 94, 23 | 
| Conread position: | 163-433 | 
| Cow position: | chr6:27471159-27470888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 18, 185 | 
| Conread position: | 163-442 | 
| Cow position: | chr6:64715788-64715511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 52, 25 | 
| Conread position: | 163-445 | 
| Cow position: | chr6:3888925-3889208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 18, 198 | 
| Conread position: | 168-326 | 
| Cow position: | chr6:6475324-6475483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 118, 134 | 
| Conread position: | 168-344 | 
| Cow position: | chr6:185921-186104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 168-421 | 
| Cow position: | chr6:38233384-38233136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 47, 159 | 
| Conread position: | 168-422 | 
| Cow position: | chr6:1411395-1411648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 45, 189 | 
| Conread position: | 168-432 | 
| Cow position: | chr6:10499176-10499439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-432 | 
| Cow position: | chr6:16052428-16052164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 41, 190 | 
| Conread position: | 168-432 | 
| Cow position: | chr6:27170128-27169866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 47, 98 | 
| Conread position: | 168-432 | 
| Cow position: | chr6:28063883-28063621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 47, 74 | 
| Conread position: | 168-432 | 
| Cow position: | chr6:44032340-44032077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 47, 193 | 
| Conread position: | 168-433 | 
| Cow position: | chr6:26670320-26670583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 46, 167 | 
| Conread position: | 168-433 | 
| Cow position: | chr6:43793161-43793426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 37, 149 | 
| Conread position: | 168-441 | 
| Cow position: | chr6:7140914-7141193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 47, 213 | 
| Conread position: | 168-441 | 
| Cow position: | chr6:40315936-40315666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 40, 167 | 
| Conread position: | 168-445 | 
| Cow position: | chr6:12665771-12666041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-458 | 
| Cow position: | chr6:13847574-13847287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 39, 190 | 
| Conread position: | 168-458 | 
| Cow position: | chr6:39909075-39908789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 47, 189 | 
| Conread position: | 168-458 | 
| Cow position: | chr6:68027338-68027054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 47, 189 | 
| Conread position: | 168-460 | 
| Cow position: | chr6:24322833-24323124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-460 | 
| Cow position: | chr6:40252209-40251920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 47, 189 | 
| Conread position: | 168-460 | 
| Cow position: | chr6:40275636-40275345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-460 | 
| Cow position: | chr6:43618263-43617972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 47, 189 | 
| Conread position: | 168-460 | 
| Cow position: | chr6:69221662-69221953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-478 | 
| Cow position: | chr6:2375249-2374945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 47, 189 | 
| Conread position: | 168-485 | 
| Cow position: | chr6:330918-331234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 47, 168 | 
| Conread position: | 168-488 | 
| Cow position: | chr6:28105305-28105619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 47, 131 | 
| Conread position: | 168-496 | 
| Cow position: | chr6:65821571-65821899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 48, 172 | 
| Conread position: | 168-501 | 
| Cow position: | chr6:66542194-66541854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 34, 317 | 
| Conread position: | 168-503 | 
| Cow position: | chr6:8202291-8201960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 45, 189 | 
| Conread position: | 168-526 | 
| Cow position: | chr6:15477459-15477098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 47, 102 | 
| Conread position: | 168-548 | 
| Cow position: | chr6:33899675-33900052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 124, 40 | 
| Conread position: | 168-550 | 
| Cow position: | chr6:38900617-38900998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 67 | 
| Conread position: | 168-551 | 
| Cow position: | chr6:2887735-2887338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 48, 168 | 
| Conread position: | 168-552 | 
| Cow position: | chr6:31565643-31566040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 219 | 
| Conread position: | 171-426 | 
| Cow position: | chr6:65914742-65914493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 44, 80 | 
| Conread position: | 171-445 | 
| Cow position: | chr6:14852032-14852305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 44, 174 | 
| Conread position: | 171-445 | 
| Cow position: | chr6:58027299-58027031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 44, 166 | 
| Conread position: | 171-458 | 
| Cow position: | chr6:17597746-17598017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 41, 21 | 
| Conread position: | 171-498 | 
| Cow position: | chr6:65928516-65928189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 40, 187 | 
| Conread position: | 171-503 | 
| Cow position: | chr6:3277401-3277727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 22, 73 | 
| Conread position: | 171-505 | 
| Cow position: | chr6:1099632-1099963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 45, 163 | 
| Conread position: | 171-506 | 
| Cow position: | chr6:12530033-12529709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 15, 157 | 
| Conread position: | 173-433 | 
| Cow position: | chr6:25794316-25794059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 39, 100 | 
| Conread position: | 173-458 | 
| Cow position: | chr6:13104598-13104320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 42, 10 | 
| Conread position: | 173-458 | 
| Cow position: | chr6:13944450-13944169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 42, 166 | 
| Conread position: | 173-494 | 
| Cow position: | chr6:44150013-44150330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 36, 184 | 
| Conread position: | 173-500 | 
| Cow position: | chr6:52693571-52693249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 37, 62 | 
| Conread position: | 173-503 | 
| Cow position: | chr6:55543776-55544104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 42, 184 | 
| Conread position: | 174-445 | 
| Cow position: | chr6:538533-538263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 117, 41 | 
| Conread position: | 176-550 | 
| Cow position: | chr6:34025796-34025444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 35, 122 | 
| Conread position: | 177-460 | 
| Cow position: | chr6:10631600-10631315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 137 | 
| Conread position: | 177-549 | 
| Cow position: | chr6:31637021-31637373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 40 | 
| Conread position: | 178-345 | 
| Cow position: | chr6:6544756-6544581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 36, 98 | 
| Conread position: | 180-501 | 
| Cow position: | chr6:8021455-8021148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 155, 35 | 
| Conread position: | 187-346 | 
| Cow position: | chr6:3487890-3488054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 28, 149 | 
| Conread position: | 187-409 | 
| Cow position: | chr6:40813137-40813357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 28, 169 | 
| Conread position: | 187-416 | 
| Cow position: | chr6:185254-185481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 29, 128 | 
| Conread position: | 187-439 | 
| Cow position: | chr6:11724578-11724826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 56, 28 | 
| Conread position: | 187-461 | 
| Cow position: | chr6:51086474-51086202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 27, 86 | 
| Conread position: | 187-474 | 
| Cow position: | chr6:28275512-28275227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 107, 155 | 
| Conread position: | 187-499 | 
| Cow position: | chr6:17046589-17046278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 28, 170 | 
| Conread position: | 187-501 | 
| Cow position: | chr6:47042663-47042976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 21, 174 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:5949245-5949556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 28, 170 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:8760770-8761082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 28, 100 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:15140650-15140957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 29, 152 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:27529472-27529784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 28, 174 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:29312027-29311714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 29, 170 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:30274648-30274956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 108, 167 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:34892470-34892783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 28, 158 | 
| Conread position: | 187-503 | 
| Cow position: | chr6:36526584-36526269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 26, 158 | 
| Conread position: | 187-508 | 
| Cow position: | chr6:1822098-1822417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 28, 170 | 
| Conread position: | 188-439 | 
| Cow position: | chr6:66232344-66232096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 27, 85 | 
| Conread position: | 188-503 | 
| Cow position: | chr6:20560578-20560889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 27, 169 | 
| Conread position: | 189-503 | 
| Cow position: | chr6:35876182-35876495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 26, 174 | 
| Conread position: | 192-503 | 
| Cow position: | chr6:39438076-39437770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 24, 164 | 
| Conread position: | 192-552 | 
| Cow position: | chr6:10644078-10643714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 23, 166 | 
| Conread position: | 193-445 | 
| Cow position: | chr6:30479633-30479381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 22, 168 | 
| Conread position: | 193-500 | 
| Cow position: | chr6:6567122-6566831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 19, 103 | 
| Conread position: | 199-507 | 
| Cow position: | chr6:40867042-40867342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 11, 142 | 
| Conread position: | 199-513 | 
| Cow position: | chr6:25214778-25214463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 17, 158 | 
| Conread position: | 200-552 | 
| Cow position: | chr6:60168660-60169004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 85, 42 | 
| Conread position: | 202-497 | 
| Cow position: | chr6:13316992-13317278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 83, 101 | 
| Conread position: | 202-503 | 
| Cow position: | chr6:15280042-15280329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 92, 129 | 
| Conread position: | 202-508 | 
| Cow position: | chr6:65842100-65841807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 93, 63 | 
| Conread position: | 202-533 | 
| Cow position: | chr6:33994812-33995135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 67, 24 | 
| Conread position: | 213-526 | 
| Cow position: | chr6:65881410-65881107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 81, 139 | 
| Conread position: | 240-496 | 
| Cow position: | chr6:3544961-3544711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 55, 25 | 
| Conread position: | 240-550 | 
| Cow position: | chr6:44550614-44550922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 58, 99 | 
| Conread position: | 265-527 | 
| Cow position: | chr6:17245104-17245356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 46, 87 | 
| Conread position: | 359-553 | 
| Cow position: | chr6:6543865-6543676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 143, 16 | 
Show alignments to all cow chromosomes.
