Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8027I19.5 |
| Conread position: | 95-460 |
| Cow position: | chr7:3517755-3517387 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 163-488 |
| Cow position: | chr7:55537272-55537596 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 163-503 |
| Cow position: | chr7:45948502-45948839 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 167-460 |
| Cow position: | chr7:20515134-20515425 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 168-313 |
| Cow position: | chr7:19047778-19047933 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 168-416 |
| Cow position: | chr7:67428578-67428323 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 47, 215 |
| Conread position: | 168-418 |
| Cow position: | chr7:6489830-6489582 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-423 |
| Cow position: | chr7:63386376-63386124 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 168-425 |
| Cow position: | chr7:11466143-11466389 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 54 |
| Conread position: | 168-430 |
| Cow position: | chr7:68333626-68333370 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 168-432 |
| Cow position: | chr7:60794663-60794927 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 168-441 |
| Cow position: | chr7:59679490-59679222 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 168-445 |
| Cow position: | chr7:995162-994885 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 168-445 |
| Cow position: | chr7:68908958-68908683 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 188 |
| Conread position: | 168-458 |
| Cow position: | chr7:7257812-7257545 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 168-458 |
| Cow position: | chr7:11447195-11446908 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr7:16235-16525 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 47, 138 |
| Conread position: | 168-460 |
| Cow position: | chr7:3300518-3300809 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 168-460 |
| Cow position: | chr7:6648018-6648309 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr7:21320794-21320503 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr7:25250743-25250451 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 168-460 |
| Cow position: | chr7:60463787-60463496 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-460 |
| Cow position: | chr7:61808870-61808579 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 168-468 |
| Cow position: | chr7:3234049-3234344 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 168-468 |
| Cow position: | chr7:61559851-61559552 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 168-514 |
| Cow position: | chr7:24058074-24057736 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 168-525 |
| Cow position: | chr7:58994232-58993881 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 168-527 |
| Cow position: | chr7:27584079-27584441 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 168-528 |
| Cow position: | chr7:21127020-21127374 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 171 |
| Conread position: | 168-530 |
| Cow position: | chr7:7294026-7294375 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 168-546 |
| Cow position: | chr7:33351880-33351502 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 169-460 |
| Cow position: | chr7:20798801-20799099 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 178 |
| Conread position: | 169-553 |
| Cow position: | chr7:41875629-41876014 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 150 |
| Conread position: | 171-361 |
| Cow position: | chr7:3155883-3155685 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 171-363 |
| Cow position: | chr7:65811472-65811272 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 171-441 |
| Cow position: | chr7:32727874-32728132 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 171-500 |
| Cow position: | chr7:21929784-21929458 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 171-530 |
| Cow position: | chr7:48635073-48634717 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 171-538 |
| Cow position: | chr7:20304848-20305221 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 171-569 |
| Cow position: | chr7:29471092-29470704 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 172-440 |
| Cow position: | chr7:68481190-68480927 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 172-553 |
| Cow position: | chr7:1403968-1404347 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 173-394 |
| Cow position: | chr7:21853198-21853409 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 173-434 |
| Cow position: | chr7:525611-525350 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 162 |
| Conread position: | 173-445 |
| Cow position: | chr7:46901443-46901712 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 173-460 |
| Cow position: | chr7:38537032-38536751 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 173-526 |
| Cow position: | chr7:58377131-58377479 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 173-553 |
| Cow position: | chr7:26852303-26851932 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 172 |
| Conread position: | 174-552 |
| Cow position: | chr7:63950788-63951166 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 167 |
| Conread position: | 178-512 |
| Cow position: | chr7:20821338-20821010 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 179-527 |
| Cow position: | chr7:33072652-33073000 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 11, 179 |
| Conread position: | 185-458 |
| Cow position: | chr7:25440131-25439862 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 172 |
| Conread position: | 187-365 |
| Cow position: | chr7:38397434-38397250 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 187-442 |
| Cow position: | chr7:64241167-64241419 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 187-489 |
| Cow position: | chr7:14138975-14139275 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-500 |
| Cow position: | chr7:27787254-27786936 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 187-503 |
| Cow position: | chr7:446009-446318 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 187-503 |
| Cow position: | chr7:8144619-8144931 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 187-503 |
| Cow position: | chr7:13536965-13537271 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 124 |
| Conread position: | 187-503 |
| Cow position: | chr7:21986027-21985712 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-503 |
| Cow position: | chr7:34486540-34486227 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-504 |
| Cow position: | chr7:10430799-10431106 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 187-509 |
| Cow position: | chr7:4415998-4415679 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 187-528 |
| Cow position: | chr7:29369674-29370007 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 188-445 |
| Cow position: | chr7:1450984-1450738 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 188-516 |
| Cow position: | chr7:51014896-51014566 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 27, 172 |
| Conread position: | 189-404 |
| Cow position: | chr7:58552062-58551849 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 189-503 |
| Cow position: | chr7:34149722-34149411 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 26, 147 |
| Conread position: | 193-351 |
| Cow position: | chr7:1610452-1610611 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 68 |
| Conread position: | 193-501 |
| Cow position: | chr7:5184022-5183720 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 161 |
| Conread position: | 193-505 |
| Cow position: | chr7:21234392-21234699 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 194-490 |
| Cow position: | chr7:65338668-65338948 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 257, 21 |
| Conread position: | 199-503 |
| Cow position: | chr7:33405632-33405929 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 202-500 |
| Cow position: | chr7:67799456-67799167 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 202-518 |
| Cow position: | chr7:21311085-21310778 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 264, 58 |
| Conread position: | 202-537 |
| Cow position: | chr7:23837168-23836845 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 55 |
| Conread position: | 211-499 |
| Cow position: | chr7:68232529-68232253 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 211-500 |
| Cow position: | chr7:5662965-5662689 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 141 |
| Conread position: | 211-514 |
| Cow position: | chr7:24807861-24808153 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 145 |
| Conread position: | 213-534 |
| Cow position: | chr7:30303172-30302866 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 77, 129 |
| Conread position: | 216-503 |
| Cow position: | chr7:1372056-1372339 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 126 |
| Conread position: | 222-503 |
| Cow position: | chr7:19924239-19924514 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 112 |
| Conread position: | 244-503 |
| Cow position: | chr7:39792321-39792068 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 261-503 |
| Cow position: | chr7:54603397-54603164 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 97 |
Show alignments to all cow chromosomes.