Cow genome map

Conread name: Ss1.1-Pig4-TMW8027I19.5

Conread position: 168-326
Cow position: chr9:4943335-4943500 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 168-332
Cow position: chr9:3998489-3998318 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 168-416
Cow position: chr9:34722382-34722146 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 101, 31

Conread position: 168-432
Cow position: chr9:50791189-50790928 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 187

Conread position: 168-432
Cow position: chr9:64017984-64018247 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 189

Conread position: 168-440
Cow position: chr9:31808048-31807782 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 47, 167

Conread position: 168-445
Cow position: chr9:17063910-17064186 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 168

Conread position: 168-445
Cow position: chr9:28440285-28440010 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 111

Conread position: 168-445
Cow position: chr9:51211159-51210883 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 189

Conread position: 168-455
Cow position: chr9:53702251-53702530 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 281, 47

Conread position: 168-458
Cow position: chr9:780327-780613 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 36, 171

Conread position: 168-458
Cow position: chr9:2487641-2487939 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 219

Conread position: 168-458
Cow position: chr9:21380828-21381107 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 192
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 54

Conread position: 168-458
Cow position: chr9:25035368-25035654 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 189

Conread position: 168-458
Cow position: chr9:28678450-28678164 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 189

Conread position: 168-458
Cow position: chr9:30827157-30826873 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 47, 148

Conread position: 168-460
Cow position: chr9:1075720-1076011 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 189

Conread position: 168-460
Cow position: chr9:31064910-31064619 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 48, 189

Conread position: 168-462
Cow position: chr9:45873823-45873534 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 189

Conread position: 168-466
Cow position: chr9:27934565-27934270 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 62

Conread position: 168-503
Cow position: chr9:3566358-3566700 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 215

Conread position: 168-512
Cow position: chr9:4282255-4281915 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 33, 178

Conread position: 168-525
Cow position: chr9:13476403-13476759 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 42, 179

Conread position: 168-551
Cow position: chr9:59511866-59511484 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 187

Conread position: 168-552
Cow position: chr9:42556405-42556022 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 189

Conread position: 168-552
Cow position: chr9:44818657-44818283 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 51, 47

Conread position: 169-432
Cow position: chr9:1251519-1251780 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 102

Conread position: 169-487
Cow position: chr9:36724980-36724661 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 14, 190

Conread position: 169-512
Cow position: chr9:59426249-59425914 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 170-418
Cow position: chr9:10322281-10322034 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 172

Conread position: 171-488
Cow position: chr9:59444323-59444006 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 125

Conread position: 171-523
Cow position: chr9:30488048-30487680 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 49, 44

Conread position: 171-527
Cow position: chr9:3803817-3803464 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 242
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 44, 25

Conread position: 171-529
Cow position: chr9:1980465-1980112 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 164

Conread position: 171-531
Cow position: chr9:52291900-52291531 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 244
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 189

Conread position: 171-553
Cow position: chr9:1636425-1636052 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 254
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 41, 99

Conread position: 172-460
Cow position: chr9:49177354-49177641 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 43, 166

Conread position: 172-509
Cow position: chr9:20308676-20309007 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 116

Conread position: 172-509
Cow position: chr9:37095998-37095675 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 10

Conread position: 173-503
Cow position: chr9:28022277-28021950 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 231
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 166

Conread position: 173-525
Cow position: chr9:28688582-28688226 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 43, 9

Conread position: 173-552
Cow position: chr9:29329133-29328764 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 175-489
Cow position: chr9:59173674-59173995 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 209

Conread position: 177-550
Cow position: chr9:3393141-3393516 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 54

Conread position: 181-518
Cow position: chr9:12062031-12061685 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 164

Conread position: 182-503
Cow position: chr9:60277552-60277870 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 14, 176

Conread position: 182-536
Cow position: chr9:3543308-3542953 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 33, 175

Conread position: 187-346
Cow position: chr9:25187564-25187396 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 83

Conread position: 187-441
Cow position: chr9:59454807-59455055 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 48, 28

Conread position: 187-445
Cow position: chr9:6830045-6830302 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 22, 152

Conread position: 187-460
Cow position: chr9:222070-222340 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 170

Conread position: 187-470
Cow position: chr9:130730-131012 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 28, 170

Conread position: 187-470
Cow position: chr9:3005786-3006067 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 64

Conread position: 187-485
Cow position: chr9:27035141-27034849 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 167

Conread position: 187-496
Cow position: chr9:9013560-9013256 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 147

Conread position: 187-499
Cow position: chr9:42310146-42309835 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 171

Conread position: 187-502
Cow position: chr9:51181726-51182042 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 28, 133

Conread position: 187-503
Cow position: chr9:4532956-4532643 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 28, 174

Conread position: 187-503
Cow position: chr9:6050586-6050896 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 26, 152

Conread position: 187-503
Cow position: chr9:7003247-7002934 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 28, 176

Conread position: 187-503
Cow position: chr9:18509340-18509651 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 29, 168

Conread position: 187-503
Cow position: chr9:29027740-29028049 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 28, 160

Conread position: 187-503
Cow position: chr9:29628288-29628595 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 29, 136

Conread position: 187-503
Cow position: chr9:30672828-30672520 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 28, 83

Conread position: 187-504
Cow position: chr9:22654031-22653717 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 28, 160

Conread position: 187-505
Cow position: chr9:16176230-16175919 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 28, 172

Conread position: 187-508
Cow position: chr9:42569364-42569043 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 67

Conread position: 188-432
Cow position: chr9:3727353-3727095 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 40

Conread position: 188-489
Cow position: chr9:47002653-47002354 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 169

Conread position: 188-501
Cow position: chr9:37970751-37971058 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 165

Conread position: 188-552
Cow position: chr9:249622-249980 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 232
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 112

Conread position: 189-484
Cow position: chr9:7061632-7061926 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 158

Conread position: 193-533
Cow position: chr9:60464177-60464515 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 231
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 11

Conread position: 194-534
Cow position: chr9:55618639-55618311 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 44, 21

Conread position: 197-355
Cow position: chr9:6249743-6249584 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 134

Conread position: 202-505
Cow position: chr9:37162370-37162663 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 90, 150

Conread position: 211-460
Cow position: chr9:25754795-25755037 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 26

Conread position: 211-502
Cow position: chr9:2171492-2171210 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 82, 109

Conread position: 212-500
Cow position: chr9:25022869-25023146 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 83, 116

Conread position: 217-445
Cow position: chr9:16268795-16268573 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 135

Conread position: 237-456
Cow position: chr9:6975130-6974917 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 56, 20

Conread position: 242-444
Cow position: chr9:60651314-60651510 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 91

Conread position: 244-462
Cow position: chr9:25484267-25484058 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 108

Conread position: 252-514
Cow position: chr9:3354290-3354548 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 82

Conread position: 344-501
Cow position: chr9:63854884-63854727 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 130, 32

Show alignments to all cow chromosomes.