• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8027M23.3
        

               
Conread position:
               
4-99
               

               
Cow position:
               
chr24:26725474-26725378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr24:26725353-26725168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 59
               

               
Conread position:
               
287-555
               

               
Cow position:
               
chr24:6900509-6900793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
291-687
               

               
Cow position:
               
chr24:40849857-40850255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
299-759
               

               
Cow position:
               
chr24:211684-212144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 32
               

               
Conread position:
               
304-533
               

               
Cow position:
               
chr24:37246510-37246268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
304-633
               

               
Cow position:
               
chr24:35332427-35332767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
305-743
               

               
Cow position:
               
chr24:28496879-28496424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
306-766
               

               
Cow position:
               
chr24:32609348-32609830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
307-632
               

               
Cow position:
               
chr24:7001360-7001028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
307-758
               

               
Cow position:
               
chr24:33944114-33944579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
308-453
               

               
Cow position:
               
chr24:15666697-15666547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-465
               

               
Cow position:
               
chr24:19804399-19804562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-528
               

               
Cow position:
               
chr24:14279599-14279831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr24:19658259-19658498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
97, 232
               

               
Conread position:
               
308-534
               

               
Cow position:
               
chr24:39500571-39500337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
308-536
               

               
Cow position:
               
chr24:27763514-27763737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
308-538
               

               
Cow position:
               
chr24:3631229-3631457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
308-565
               

               
Cow position:
               
chr24:18266460-18266188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-576
               

               
Cow position:
               
chr24:6154536-6154797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
204, 22
               

               
Conread position:
               
308-576
               

               
Cow position:
               
chr24:6161135-6160860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-592
               

               
Cow position:
               
chr24:42007458-42007741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
308-600
               

               
Cow position:
               
chr24:30177948-30178250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
308-636
               

               
Cow position:
               
chr24:29180613-29180931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
308-636
               

               
Cow position:
               
chr24:40129833-40130174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
308-642
               

               
Cow position:
               
chr24:20741034-20741374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
308-676
               

               
Cow position:
               
chr24:18331448-18331801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
308-718
               

               
Cow position:
               
chr24:5754553-5754962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
308-746
               

               
Cow position:
               
chr24:31816297-31816736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
308-748
               

               
Cow position:
               
chr24:18741859-18741402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
308-748
               

               
Cow position:
               
chr24:23556617-23556174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
308-748
               

               
Cow position:
               
chr24:36174071-36173616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-760
               

               
Cow position:
               
chr24:17860539-17860087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
308-762
               

               
Cow position:
               
chr24:29388960-29389394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
308-763
               

               
Cow position:
               
chr24:11839890-11840364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
308-764
               

               
Cow position:
               
chr24:3493605-3494060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-764
               

               
Cow position:
               
chr24:17104855-17104393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 97
               

               
Conread position:
               
308-765
               

               
Cow position:
               
chr24:6508051-6507609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr24:15861889-15861408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
309-456
               

               
Cow position:
               
chr24:20988287-20988140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
309-519
               

               
Cow position:
               
chr24:25424773-25424986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
309-547
               

               
Cow position:
               
chr24:39493009-39493253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
309-749
               

               
Cow position:
               
chr24:35675252-35675695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 145
               

               
Conread position:
               
312-765
               

               
Cow position:
               
chr24:27608381-27607930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
316-580
               

               
Cow position:
               
chr24:27633130-27633399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
316-633
               

               
Cow position:
               
chr24:32693419-32693761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
316-763
               

               
Cow position:
               
chr24:28303631-28303183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
318-580
               

               
Cow position:
               
chr24:35795021-35794746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
318-688
               

               
Cow position:
               
chr24:18390566-18390208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
319-544
               

               
Cow position:
               
chr24:5435324-5435091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
319-565
               

               
Cow position:
               
chr24:28353879-28354129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
319-585
               

               
Cow position:
               
chr24:27720032-27719766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-628
               

               
Cow position:
               
chr24:20024327-20024650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
11, 183
               

               
Conread position:
               
319-700
               

               
Cow position:
               
chr24:43200554-43200163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
319-747
               

               
Cow position:
               
chr24:28553824-28553410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
319-749
               

               
Cow position:
               
chr24:6071315-6071753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-749
               

               
Cow position:
               
chr24:18485280-18484829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
319-749
               

               
Cow position:
               
chr24:35073812-35074246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
11, 253
               

               
Conread position:
               
319-765
               

               
Cow position:
               
chr24:3165541-3165999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
320-556
               

               
Cow position:
               
chr24:40055997-40055765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
320-573
               

               
Cow position:
               
chr24:11876604-11876870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
320-602
               

               
Cow position:
               
chr24:39955325-39955039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 166
               

               
Conread position:
               
320-633
               

               
Cow position:
               
chr24:20225458-20225778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 182
               

               
Conread position:
               
320-649
               

               
Cow position:
               
chr24:39681576-39681909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 291
               

               
Conread position:
               
320-662
               

               
Cow position:
               
chr24:28319481-28319138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 177
               

               
Conread position:
               
320-676
               

               
Cow position:
               
chr24:11119001-11119358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 218
               

               
Conread position:
               
320-676
               

               
Cow position:
               
chr24:25885437-25885078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
320-676
               

               
Cow position:
               
chr24:35150251-35150599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
320-700
               

               
Cow position:
               
chr24:33153503-33153882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 87
               

               
Conread position:
               
320-748
               

               
Cow position:
               
chr24:39483197-39483626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
320-749
               

               
Cow position:
               
chr24:17407114-17407555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
320-749
               

               
Cow position:
               
chr24:25320710-25321149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 219
               

               
Conread position:
               
320-751
               

               
Cow position:
               
chr24:43028605-43028162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 148
               

               
Conread position:
               
320-759
               

               
Cow position:
               
chr24:15057124-15057558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
320-759
               

               
Cow position:
               
chr24:27096407-27096865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
320-760
               

               
Cow position:
               
chr24:24491293-24490850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
320-763
               

               
Cow position:
               
chr24:5141662-5142117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
320-763
               

               
Cow position:
               
chr24:39850156-39849714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
320-765
               

               
Cow position:
               
chr24:40300876-40301340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
320-766
               

               
Cow position:
               
chr24:33098767-33098291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
321-653
               

               
Cow position:
               
chr24:43432524-43432852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
321-743
               

               
Cow position:
               
chr24:27267358-27267771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
321-749
               

               
Cow position:
               
chr24:23695173-23694747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 214
               

               
Conread position:
               
324-565
               

               
Cow position:
               
chr24:40908743-40908994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
324-578
               

               
Cow position:
               
chr24:29027776-29028028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
324-598
               

               
Cow position:
               
chr24:16625774-16625479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 199
               

               
Conread position:
               
324-636
               

               
Cow position:
               
chr24:3152849-3152533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
324-653
               

               
Cow position:
               
chr24:19769225-19769551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
324-762
               

               
Cow position:
               
chr24:28721615-28722054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
328-519
               

               
Cow position:
               
chr24:38375016-38375214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
328-568
               

               
Cow position:
               
chr24:5151966-5152213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
328-583
               

               
Cow position:
               
chr24:17363914-17363656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
328-600
               

               
Cow position:
               
chr24:15473086-15473367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
79, 209
               

               
Conread position:
               
328-633
               

               
Cow position:
               
chr24:17159477-17159792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 186
               

               
Conread position:
               
328-653
               

               
Cow position:
               
chr24:29170696-29171023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 215
               

               
Conread position:
               
328-676
               

               
Cow position:
               
chr24:16268372-16268048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
328-764
               

               
Cow position:
               
chr24:27726273-27725828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 72
               

               
Conread position:
               
328-765
               

               
Cow position:
               
chr24:30229197-30229656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
328-766
               

               
Cow position:
               
chr24:31811916-31812367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
329-449
               

               
Cow position:
               
chr24:28289697-28289575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
329-471
               

               
Cow position:
               
chr24:15288589-15288737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 146
               

               
Conread position:
               
329-487
               

               
Cow position:
               
chr24:22193457-22193624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-490
               

               
Cow position:
               
chr24:28600876-28600718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
329-511
               

               
Cow position:
               
chr24:39238530-39238717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
329-527
               

               
Cow position:
               
chr24:18324347-18324559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
329-533
               

               
Cow position:
               
chr24:38347411-38347627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 208
               

               
Conread position:
               
329-534
               

               
Cow position:
               
chr24:591642-591857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 206
               

               
Conread position:
               
329-534
               

               
Cow position:
               
chr24:37205147-37204934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-539
               

               
Cow position:
               
chr24:27543744-27543528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 76
               

               
Conread position:
               
329-540
               

               
Cow position:
               
chr24:16267524-16267723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
193, 69
               

               
Conread position:
               
329-540
               

               
Cow position:
               
chr24:25677766-25677989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
329-540
               

               
Cow position:
               
chr24:35529655-35529870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
329-545
               

               
Cow position:
               
chr24:27683710-27683490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
329-547
               

               
Cow position:
               
chr24:6340749-6340970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-560
               

               
Cow position:
               
chr24:33238817-33238573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 210
               

               
Conread position:
               
329-565
               

               
Cow position:
               
chr24:6914032-6913789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
329-566
               

               
Cow position:
               
chr24:36555096-36554858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-578
               

               
Cow position:
               
chr24:27941276-27941026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
329-579
               

               
Cow position:
               
chr24:27967812-27968072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 90
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr24:14729141-14729392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr24:18405572-18405322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr24:24137119-24136872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 51
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr24:34315090-34315345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 22
               

               
Conread position:
               
329-583
               

               
Cow position:
               
chr24:10309006-10309249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 77
               

               
Conread position:
               
329-594
               

               
Cow position:
               
chr24:39258896-39259166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
329-606
               

               
Cow position:
               
chr24:21093729-21093450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
329-609
               

               
Cow position:
               
chr24:814533-814243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 169
               

               
Conread position:
               
329-630
               

               
Cow position:
               
chr24:32212935-32212628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
329-631
               

               
Cow position:
               
chr24:23685329-23685026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr24:39440826-39440526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 206
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr24:42345277-42344955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-635
               

               
Cow position:
               
chr24:16870054-16869739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 222
               

               
Conread position:
               
329-636
               

               
Cow position:
               
chr24:18974933-18975254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
329-637
               

               
Cow position:
               
chr24:32370179-32369869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
329-639
               

               
Cow position:
               
chr24:34564860-34565167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
329-653
               

               
Cow position:
               
chr24:15508802-15508482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-653
               

               
Cow position:
               
chr24:27290609-27290933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
116, 6
               

               
Conread position:
               
329-653
               

               
Cow position:
               
chr24:29673251-29673584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
329-653
               

               
Cow position:
               
chr24:43364095-43364420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-658
               

               
Cow position:
               
chr24:18025239-18024907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
329-662
               

               
Cow position:
               
chr24:18970760-18970437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
116, 60
               

               
Conread position:
               
329-663
               

               
Cow position:
               
chr24:40091839-40091509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-675
               

               
Cow position:
               
chr24:8886648-8886990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
116, 96
               

               
Conread position:
               
329-675
               

               
Cow position:
               
chr24:17294455-17294118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-679
               

               
Cow position:
               
chr24:44054410-44054084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-683
               

               
Cow position:
               
chr24:3430467-3430821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
329-683
               

               
Cow position:
               
chr24:28690432-28690772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
329-684
               

               
Cow position:
               
chr24:6149762-6150114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
329-687
               

               
Cow position:
               
chr24:27874334-27874687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
329-688
               

               
Cow position:
               
chr24:2675063-2675414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
329-688
               

               
Cow position:
               
chr24:12851465-12851798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
329-689
               

               
Cow position:
               
chr24:24250464-24250822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-690
               

               
Cow position:
               
chr24:29063914-29063564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
329-692
               

               
Cow position:
               
chr24:201901-201541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
329-693
               

               
Cow position:
               
chr24:31159360-31159727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
329-721
               

               
Cow position:
               
chr24:20874408-20874817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 310
               

               
Conread position:
               
329-721
               

               
Cow position:
               
chr24:28600122-28599734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
329-725
               

               
Cow position:
               
chr24:32054403-32054795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
329-743
               

               
Cow position:
               
chr24:44041278-44040853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
329-749
               

               
Cow position:
               
chr24:15246904-15246494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
329-749
               

               
Cow position:
               
chr24:26929217-26928777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
78, 180
               

               
Conread position:
               
329-750
               

               
Cow position:
               
chr24:9222644-9222215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
329-759
               

               
Cow position:
               
chr24:10671116-10671571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 187
               

               
Conread position:
               
329-759
               

               
Cow position:
               
chr24:28699789-28700217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
329-759
               

               
Cow position:
               
chr24:41980930-41980486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
329-759
               

               
Cow position:
               
chr24:43370980-43371417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
78, 106
               

               
Conread position:
               
329-760
               

               
Cow position:
               
chr24:16994626-16995054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
329-760
               

               
Cow position:
               
chr24:35985987-35985558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
329-762
               

               
Cow position:
               
chr24:17311477-17311051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 117
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr24:2402642-2402198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:1269536-1269957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:27844788-27844352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 116
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:33621754-33621295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:36404415-36403976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:38814703-38815157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr24:42380970-42380522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr24:7917635-7917195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr24:28062677-28063132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 198
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr24:30314304-30313848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 202
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr24:44987642-44987193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
330-477
               

               
Cow position:
               
chr24:43832093-43832240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
330-480
               

               
Cow position:
               
chr24:40974741-40974886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
330-501
               

               
Cow position:
               
chr24:35467447-35467273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 98
               

               
Conread position:
               
330-512
               

               
Cow position:
               
chr24:25950934-25950744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 162
               

               
Conread position:
               
330-567
               

               
Cow position:
               
chr24:11734455-11734699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
330-580
               

               
Cow position:
               
chr24:17567123-17567374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
330-604
               

               
Cow position:
               
chr24:30484210-30483935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
330-636
               

               
Cow position:
               
chr24:39159811-39159505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
330-637
               

               
Cow position:
               
chr24:30545123-30544820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
330-638
               

               
Cow position:
               
chr24:25229324-25229017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
330-687
               

               
Cow position:
               
chr24:29679579-29679221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 155
               

               
Conread position:
               
331-489
               

               
Cow position:
               
chr24:2730836-2730674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
331-568
               

               
Cow position:
               
chr24:21860486-21860245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
331-580
               

               
Cow position:
               
chr24:39219112-39218851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
331-616
               

               
Cow position:
               
chr24:16556901-16556612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
331-638
               

               
Cow position:
               
chr24:45004688-45004994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
331-653
               

               
Cow position:
               
chr24:32205060-32204733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
76, 217
               

               
Conread position:
               
331-696
               

               
Cow position:
               
chr24:32124908-32124531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
331-749
               

               
Cow position:
               
chr24:27149135-27149546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
331-749
               

               
Cow position:
               
chr24:37650404-37650839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 169
               

               
Conread position:
               
331-765
               

               
Cow position:
               
chr24:7913732-7914191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
76, 232
               

               
Conread position:
               
333-688
               

               
Cow position:
               
chr24:29781898-29782254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
333-749
               

               
Cow position:
               
chr24:18374510-18374928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 165
               

               
Conread position:
               
334-489
               

               
Cow position:
               
chr24:21264773-21264613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
334-636
               

               
Cow position:
               
chr24:33230402-33230719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
334-697
               

               
Cow position:
               
chr24:2970870-2970492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 227
               

               
Conread position:
               
334-755
               

               
Cow position:
               
chr24:39226735-39227143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
71, 143
               

               
Conread position:
               
335-631
               

               
Cow position:
               
chr24:23442843-23442541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
335-653
               

               
Cow position:
               
chr24:33724114-33723783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
337-585
               

               
Cow position:
               
chr24:40184364-40184618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
337-636
               

               
Cow position:
               
chr24:6141214-6140906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr24:39842102-39841799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chr24:18734616-18734206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
337-762
               

               
Cow position:
               
chr24:27906174-27906615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 206
               

               
Conread position:
               
337-763
               

               
Cow position:
               
chr24:11886897-11887332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
338-765
               

               
Cow position:
               
chr24:27039779-27040229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 236
               

               
Conread position:
               
339-653
               

               
Cow position:
               
chr24:39350465-39350154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
106, 48
               

               
Conread position:
               
339-763
               

               
Cow position:
               
chr24:34742491-34742927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
341-607
               

               
Cow position:
               
chr24:27052753-27052478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
343-676
               

               
Cow position:
               
chr24:41068014-41068341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
343-755
               

               
Cow position:
               
chr24:19535503-19535082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
343-763
               

               
Cow position:
               
chr24:44869760-44870173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 123
               

               
Conread position:
               
344-571
               

               
Cow position:
               
chr24:27207448-27207215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 188
               

               
Conread position:
               
344-763
               

               
Cow position:
               
chr24:24755196-24755607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
344-768
               

               
Cow position:
               
chr24:29596069-29595617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 213
               

               
Conread position:
               
347-688
               

               
Cow position:
               
chr24:20942919-20943254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
347-765
               

               
Cow position:
               
chr24:18474998-18474549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
348-627
               

               
Cow position:
               
chr24:6487671-6487952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
348-662
               

               
Cow position:
               
chr24:26732198-26732520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
348-691
               

               
Cow position:
               
chr24:27824215-27824558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
348-759
               

               
Cow position:
               
chr24:33372301-33372720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
349-679
               

               
Cow position:
               
chr24:27748401-27748724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
72, 56
               

               
Conread position:
               
349-680
               

               
Cow position:
               
chr24:2096137-2095797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
349-766
               

               
Cow position:
               
chr24:27054152-27054572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 223
               

               
Conread position:
               
350-765
               

               
Cow position:
               
chr24:10498963-10499398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 275
               

               
Conread position:
               
350-765
               

               
Cow position:
               
chr24:42825745-42825334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
57, 187
               

               
Conread position:
               
351-676
               

               
Cow position:
               
chr24:31324034-31324365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
351-688
               

               
Cow position:
               
chr24:43927568-43927240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
354-676
               

               
Cow position:
               
chr24:24457491-24457170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
359-636
               

               
Cow position:
               
chr24:33222178-33221895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
359-759
               

               
Cow position:
               
chr24:17285236-17284809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
361-573
               

               
Cow position:
               
chr24:18695385-18695601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
361-762
               

               
Cow position:
               
chr24:25194030-25194443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
361-765
               

               
Cow position:
               
chr24:18343812-18344249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 390
               

               
Conread position:
               
363-759
               

               
Cow position:
               
chr24:30235635-30236046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
368-687
               

               
Cow position:
               
chr24:28327312-28326988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
368-721
               

               
Cow position:
               
chr24:34396402-34396052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
372-633
               

               
Cow position:
               
chr24:22224952-22225229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 163
               

               
Conread position:
               
374-720
               

               
Cow position:
               
chr24:31359099-31359454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
377-749
               

               
Cow position:
               
chr24:16509752-16510135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
68, 161
               

               
Conread position:
               
380-749
               

               
Cow position:
               
chr24:39833733-39833374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
382-675
               

               
Cow position:
               
chr24:15373194-15373485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
382-765
               

               
Cow position:
               
chr24:5633252-5632848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 360
               

               
Conread position:
               
389-733
               

               
Cow position:
               
chr24:28990357-28990710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
390-746
               

               
Cow position:
               
chr24:7476557-7476189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
390-766
               

               
Cow position:
               
chr24:352812-352420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 160
               

               
Conread position:
               
393-762
               

               
Cow position:
               
chr24:16089028-16089406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
397-749
               

               
Cow position:
               
chr24:6132072-6131723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
408-676
               

               
Cow position:
               
chr24:34008765-34008492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 256
               

               
Conread position:
               
408-749
               

               
Cow position:
               
chr24:39143421-39143776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
408-759
               

               
Cow position:
               
chr24:27220278-27219914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
409-683
               

               
Cow position:
               
chr24:30897724-30897450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
36, 249
               

               
Conread position:
               
414-693
               

               
Cow position:
               
chr24:6912532-6912266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
415-654
               

               
Cow position:
               
chr24:16895616-16895374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
415-759
               

               
Cow position:
               
chr24:18999867-19000217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
418-765
               

               
Cow position:
               
chr24:18357230-18356875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
419-749
               

               
Cow position:
               
chr24:37037723-37038055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
421-691
               

               
Cow position:
               
chr24:19736502-19736237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
423-711
               

               
Cow position:
               
chr24:23187089-23186800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
442-662
               

               
Cow position:
               
chr24:24662281-24662060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
456-749
               

               
Cow position:
               
chr24:28233911-28234205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
468-749
               

               
Cow position:
               
chr24:29561700-29561415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 258
               

               
Conread position:
               
478-692
               

               
Cow position:
               
chr24:39791428-39791647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
478-759
               

               
Cow position:
               
chr24:39523558-39523276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
482-764
               

               
Cow position:
               
chr24:37975089-37974804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
484-708
               

               
Cow position:
               
chr24:7046852-7046634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
484-759
               

               
Cow position:
               
chr24:13948014-13948296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 124
               

               
Conread position:
               
489-765
               

               
Cow position:
               
chr24:230175-230460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 241
               

               
Conread position:
               
491-637
               

               
Cow position:
               
chr24:30308656-30308507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
498-764
               

               
Cow position:
               
chr24:39911129-39910849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 230
               

               
Conread position:
               
500-765
               

               
Cow position:
               
chr24:27349270-27348995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
500-766
               

               
Cow position:
               
chr24:37823438-37823706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
501-697
               

               
Cow position:
               
chr24:28042883-28043087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 190
               

               
Conread position:
               
501-743
               

               
Cow position:
               
chr24:15288731-15288985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 191
               

               
Conread position:
               
501-763
               

               
Cow position:
               
chr24:28600528-28600260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 146
               

               
Conread position:
               
501-764
               

               
Cow position:
               
chr24:175586-175328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 133
               

               
Conread position:
               
501-765
               

               
Cow position:
               
chr24:20807446-20807705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
255, 40
               

               
Conread position:
               
506-765
               

               
Cow position:
               
chr24:27284736-27285004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
159, 74
               

               
Conread position:
               
528-757
               

               
Cow position:
               
chr24:28344321-28344552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
531-749
               

               
Cow position:
               
chr24:5360660-5360875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
531-749
               

               
Cow position:
               
chr24:33244335-33244550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
538-759
               

               
Cow position:
               
chr24:22133118-22133340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 160
               

               
Conread position:
               
539-759
               

               
Cow position:
               
chr24:29985037-29984816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 145
               

               
Conread position:
               
540-764
               

               
Cow position:
               
chr24:19186891-19187114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
543-766
               

               
Cow position:
               
chr24:39238723-39238944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
183, 112
               

               
Conread position:
               
544-749
               

               
Cow position:
               
chr24:25122296-25122501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
549-766
               

               
Cow position:
               
chr24:13610269-13610482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
555-763
               

               
Cow position:
               
chr24:42687812-42688018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
559-749
               

               
Cow position:
               
chr24:29539961-29539766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 48
               
Show alignments to all cow chromosomes.