• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8027M23.3
        

               
Conread position:
               
284-749
               

               
Cow position:
               
chr6:8804778-8804315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
299-678
               

               
Cow position:
               
chr6:46570887-46571252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
299-766
               

               
Cow position:
               
chr6:13688044-13687567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
300-580
               

               
Cow position:
               
chr6:25773617-25773332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 185
               

               
Conread position:
               
300-582
               

               
Cow position:
               
chr6:16737787-16738074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
300-590
               

               
Cow position:
               
chr6:47625193-47624897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
300-761
               

               
Cow position:
               
chr6:3952290-3952761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
304-622
               

               
Cow position:
               
chr6:31635915-31635593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
304-633
               

               
Cow position:
               
chr6:48567570-48567246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
304-658
               

               
Cow position:
               
chr6:12551040-12551400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
304-762
               

               
Cow position:
               
chr6:16700031-16700495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
304-763
               

               
Cow position:
               
chr6:29210274-29210720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
304-763
               

               
Cow position:
               
chr6:32125839-32126294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
304-768
               

               
Cow position:
               
chr6:46465600-46466065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
307-693
               

               
Cow position:
               
chr6:6343197-6343603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 237
               

               
Conread position:
               
308-462
               

               
Cow position:
               
chr6:26837610-26837453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-466
               

               
Cow position:
               
chr6:60467804-60467960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
308-487
               

               
Cow position:
               
chr6:34235657-34235477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr6:51398577-51398771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
308-522
               

               
Cow position:
               
chr6:24327359-24327145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
308-529
               

               
Cow position:
               
chr6:2012795-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-533
               

               
Cow position:
               
chr6:14201470-14201708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 177
               

               
Conread position:
               
308-534
               

               
Cow position:
               
chr6:32916144-32915915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
308-541
               

               
Cow position:
               
chr6:10422950-10423183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
308-573
               

               
Cow position:
               
chr6:642801-642520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-573
               

               
Cow position:
               
chr6:14839252-14838979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
308-573
               

               
Cow position:
               
chr6:53710894-53711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-574
               

               
Cow position:
               
chr6:67544516-67544249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
308-581
               

               
Cow position:
               
chr6:60456604-60456883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
308-600
               

               
Cow position:
               
chr6:67044746-67045025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
308-608
               

               
Cow position:
               
chr6:29077505-29077816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-623
               

               
Cow position:
               
chr6:1944507-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
221, 22
               

               
Conread position:
               
308-633
               

               
Cow position:
               
chr6:130388-130057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-633
               

               
Cow position:
               
chr6:61113526-61113873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-636
               

               
Cow position:
               
chr6:52002145-52002464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
308-636
               

               
Cow position:
               
chr6:54140590-54140906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
308-637
               

               
Cow position:
               
chr6:31525823-31526156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
308-653
               

               
Cow position:
               
chr6:13040224-13040565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
9, 183
               

               
Conread position:
               
308-653
               

               
Cow position:
               
chr6:16706783-16707138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-655
               

               
Cow position:
               
chr6:10695645-10695988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
308-659
               

               
Cow position:
               
chr6:60350527-60350160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
308-692
               

               
Cow position:
               
chr6:5302628-5302248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
182, 22
               

               
Conread position:
               
308-700
               

               
Cow position:
               
chr6:21869869-21869474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-752
               

               
Cow position:
               
chr6:63047352-63047807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
308-762
               

               
Cow position:
               
chr6:52478651-52478170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
308-763
               

               
Cow position:
               
chr6:60144401-60143956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr6:18987993-18988439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr6:26728750-26728299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr6:35181477-35181006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr6:40031970-40032427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
308-766
               

               
Cow position:
               
chr6:55475022-55475482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
308-768
               

               
Cow position:
               
chr6:64431715-64432182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
309-576
               

               
Cow position:
               
chr6:49685362-49685634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
309-675
               

               
Cow position:
               
chr6:1886890-1886523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 232
               

               
Conread position:
               
309-766
               

               
Cow position:
               
chr6:28148026-28148510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
310-758
               

               
Cow position:
               
chr6:29239721-29240169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
311-529
               

               
Cow position:
               
chr6:32210850-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
311-531
               

               
Cow position:
               
chr6:242592-242815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 91
               

               
Conread position:
               
311-573
               

               
Cow position:
               
chr6:48344107-48344379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chr6:50120007-50119802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
312-580
               

               
Cow position:
               
chr6:24652403-24652141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
313-636
               

               
Cow position:
               
chr6:456967-457284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
314-589
               

               
Cow position:
               
chr6:6460324-6460604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
316-527
               

               
Cow position:
               
chr6:12623252-12623465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
316-532
               

               
Cow position:
               
chr6:4079602-4079381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 166
               

               
Conread position:
               
316-540
               

               
Cow position:
               
chr6:30786367-30786140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
316-749
               

               
Cow position:
               
chr6:49398835-49398401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 237
               

               
Conread position:
               
318-645
               

               
Cow position:
               
chr6:528490-528166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
319-471
               

               
Cow position:
               
chr6:60017852-60018007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
319-479
               

               
Cow position:
               
chr6:21184740-21184907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
319-489
               

               
Cow position:
               
chr6:20605718-20605895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-522
               

               
Cow position:
               
chr6:10605469-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
319-531
               

               
Cow position:
               
chr6:66087739-66087956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 160
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr6:15923213-15922992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr6:19329973-19329748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
11, 165
               

               
Conread position:
               
319-605
               

               
Cow position:
               
chr6:18961738-18961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-633
               

               
Cow position:
               
chr6:35471742-35471404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 322
               

               
Conread position:
               
319-636
               

               
Cow position:
               
chr6:63197387-63197054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
319-637
               

               
Cow position:
               
chr6:56842944-56843264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-637
               

               
Cow position:
               
chr6:66874146-66874461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
319-653
               

               
Cow position:
               
chr6:35435787-35436120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
319-662
               

               
Cow position:
               
chr6:20098180-20097824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
319-676
               

               
Cow position:
               
chr6:47339565-47339211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
319-746
               

               
Cow position:
               
chr6:51835184-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
319-748
               

               
Cow position:
               
chr6:54132602-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 175
               

               
Conread position:
               
319-749
               

               
Cow position:
               
chr6:39358556-39358115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
319-759
               

               
Cow position:
               
chr6:46557842-46558292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 86
               

               
Conread position:
               
319-762
               

               
Cow position:
               
chr6:1770411-1769953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
319-764
               

               
Cow position:
               
chr6:36195998-36196445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 229
               

               
Conread position:
               
319-765
               

               
Cow position:
               
chr6:54490956-54490502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr6:47519835-47520298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
320-454
               

               
Cow position:
               
chr6:5329940-5330072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
320-467
               

               
Cow position:
               
chr6:7253641-7253485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
320-497
               

               
Cow position:
               
chr6:7801580-7801402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
320-583
               

               
Cow position:
               
chr6:34031453-34031717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
320-601
               

               
Cow position:
               
chr6:44372158-44371871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
320-633
               

               
Cow position:
               
chr6:53178425-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
320-636
               

               
Cow position:
               
chr6:22503133-22502802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
320-636
               

               
Cow position:
               
chr6:42565471-42565797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
320-653
               

               
Cow position:
               
chr6:9026302-9026645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 277
               

               
Conread position:
               
320-653
               

               
Cow position:
               
chr6:19427234-19427576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 265
               

               
Conread position:
               
320-653
               

               
Cow position:
               
chr6:19681735-19681399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
320-653
               

               
Cow position:
               
chr6:45065221-45064891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
320-655
               

               
Cow position:
               
chr6:59508137-59508484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 247
               

               
Conread position:
               
320-658
               

               
Cow position:
               
chr6:7131086-7130749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
10, 87
               

               
Conread position:
               
320-662
               

               
Cow position:
               
chr6:28977246-28976905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
320-662
               

               
Cow position:
               
chr6:35613624-35613282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
320-676
               

               
Cow position:
               
chr6:35103542-35103183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
320-681
               

               
Cow position:
               
chr6:8209804-8209456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
320-688
               

               
Cow position:
               
chr6:9736854-9736492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
320-691
               

               
Cow position:
               
chr6:6201230-6201596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
320-725
               

               
Cow position:
               
chr6:8637060-8637482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 147
               

               
Conread position:
               
320-740
               

               
Cow position:
               
chr6:35990437-35990020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
320-747
               

               
Cow position:
               
chr6:46860382-46859944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
320-748
               

               
Cow position:
               
chr6:41733412-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 423
               

               
Conread position:
               
320-749
               

               
Cow position:
               
chr6:7103450-7103011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 219
               

               
Conread position:
               
320-749
               

               
Cow position:
               
chr6:15242621-15243067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
320-759
               

               
Cow position:
               
chr6:32867421-32866983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 142
               

               
Conread position:
               
320-761
               

               
Cow position:
               
chr6:44194760-44194315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 194
               

               
Conread position:
               
320-762
               

               
Cow position:
               
chr6:14696587-14696148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
320-763
               

               
Cow position:
               
chr6:23695783-23696237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
320-764
               

               
Cow position:
               
chr6:32121696-32122143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 185
               

               
Conread position:
               
320-765
               

               
Cow position:
               
chr6:31535785-31535329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
320-765
               

               
Cow position:
               
chr6:36202613-36203065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
320-765
               

               
Cow position:
               
chr6:37634575-37635024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 117
               

               
Conread position:
               
320-766
               

               
Cow position:
               
chr6:4383278-4383719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
320-766
               

               
Cow position:
               
chr6:61269115-61269562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
320-768
               

               
Cow position:
               
chr6:24468607-24468151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
321-652
               

               
Cow position:
               
chr6:28476968-28477293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
321-653
               

               
Cow position:
               
chr6:23248177-23247840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 168
               

               
Conread position:
               
321-749
               

               
Cow position:
               
chr6:38853872-38853428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 222
               

               
Conread position:
               
322-749
               

               
Cow position:
               
chr6:31564546-31564124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
324-441
               

               
Cow position:
               
chr6:8599581-8599699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
324-534
               

               
Cow position:
               
chr6:65676048-65676261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 156
               

               
Conread position:
               
324-534
               

               
Cow position:
               
chr6:69500121-69500332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
324-536
               

               
Cow position:
               
chr6:60152827-60153047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
324-633
               

               
Cow position:
               
chr6:65711618-65711921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 156
               

               
Conread position:
               
324-676
               

               
Cow position:
               
chr6:67214533-67214894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
324-711
               

               
Cow position:
               
chr6:48281786-48282186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 174
               

               
Conread position:
               
324-725
               

               
Cow position:
               
chr6:6067886-6067498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
324-740
               

               
Cow position:
               
chr6:19695599-19696028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
324-748
               

               
Cow position:
               
chr6:60859515-60859071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
83, 239
               

               
Conread position:
               
324-760
               

               
Cow position:
               
chr6:5609649-5609203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
324-763
               

               
Cow position:
               
chr6:13367086-13367527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
327-547
               

               
Cow position:
               
chr6:48425527-48425298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 78
               

               
Conread position:
               
327-679
               

               
Cow position:
               
chr6:51463822-51463486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
80, 152
               

               
Conread position:
               
328-471
               

               
Cow position:
               
chr6:89114-88963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
328-475
               

               
Cow position:
               
chr6:14063863-14063715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
328-533
               

               
Cow position:
               
chr6:2607408-2607622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
328-537
               

               
Cow position:
               
chr6:40138910-40138708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
328-568
               

               
Cow position:
               
chr6:24515398-24515157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 211
               

               
Conread position:
               
328-572
               

               
Cow position:
               
chr6:54293906-54294147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
328-580
               

               
Cow position:
               
chr6:62479370-62479107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
328-585
               

               
Cow position:
               
chr6:6614228-6614495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 210
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chr6:54807018-54807289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 202
               

               
Conread position:
               
328-604
               

               
Cow position:
               
chr6:14850920-14850637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
328-629
               

               
Cow position:
               
chr6:48169740-48170040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
328-636
               

               
Cow position:
               
chr6:45606653-45606349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
328-637
               

               
Cow position:
               
chr6:38440977-38441282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
328-652
               

               
Cow position:
               
chr6:18049230-18048899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
328-653
               

               
Cow position:
               
chr6:28811199-28810872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
59, 162
               

               
Conread position:
               
328-658
               

               
Cow position:
               
chr6:38614619-38614943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 77
               

               
Conread position:
               
328-691
               

               
Cow position:
               
chr6:54991197-54990841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
328-714
               

               
Cow position:
               
chr6:36470767-36470377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
328-749
               

               
Cow position:
               
chr6:24031170-24031591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 176
               

               
Conread position:
               
328-764
               

               
Cow position:
               
chr6:10635972-10636391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
328-765
               

               
Cow position:
               
chr6:53139134-53138694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 240
               

               
Conread position:
               
328-766
               

               
Cow position:
               
chr6:8965885-8966333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
328-766
               

               
Cow position:
               
chr6:44078317-44078760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
329-453
               

               
Cow position:
               
chr6:21311962-21311831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-469
               

               
Cow position:
               
chr6:57474176-57474319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
329-484
               

               
Cow position:
               
chr6:3719212-3719050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 157
               

               
Conread position:
               
329-489
               

               
Cow position:
               
chr6:388967-389129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
329-489
               

               
Cow position:
               
chr6:59015766-59015599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
329-490
               

               
Cow position:
               
chr6:1783976-1783817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
329-490
               

               
Cow position:
               
chr6:59302029-59301860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chr6:55608010-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chr6:65862482-65862678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-525
               

               
Cow position:
               
chr6:39994665-39994462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 162
               

               
Conread position:
               
329-527
               

               
Cow position:
               
chr6:40264401-40264199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-533
               

               
Cow position:
               
chr6:50445963-50445753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-541
               

               
Cow position:
               
chr6:44377062-44377285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
329-542
               

               
Cow position:
               
chr6:59620465-59620685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-547
               

               
Cow position:
               
chr6:58439764-58439981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 114
               

               
Conread position:
               
329-552
               

               
Cow position:
               
chr6:57384316-57384548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
329-561
               

               
Cow position:
               
chr6:12500656-12500889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 184
               

               
Conread position:
               
329-565
               

               
Cow position:
               
chr6:54885117-54884865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
329-568
               

               
Cow position:
               
chr6:5462252-5462017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 22
               

               
Conread position:
               
329-568
               

               
Cow position:
               
chr6:16410992-16411232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-570
               

               
Cow position:
               
chr6:58076021-58076273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-573
               

               
Cow position:
               
chr6:45160495-45160252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr6:47540322-47540584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 253
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr6:61137161-61137428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
329-583
               

               
Cow position:
               
chr6:9322955-9323205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
329-584
               

               
Cow position:
               
chr6:12387527-12387270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
329-585
               

               
Cow position:
               
chr6:13741492-13741759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
329-585
               

               
Cow position:
               
chr6:67304598-67304863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-603
               

               
Cow position:
               
chr6:68049232-68049507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-604
               

               
Cow position:
               
chr6:21542116-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
329-620
               

               
Cow position:
               
chr6:24961941-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
329-632
               

               
Cow position:
               
chr6:20157121-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
329-632
               

               
Cow position:
               
chr6:52248337-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr6:445107-445429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
78, 301
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr6:52562378-52562074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 171
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr6:53401165-53401462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 75
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr6:54600165-54600454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
329-633
               

               
Cow position:
               
chr6:60473930-60474236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 146
               

               
Conread position:
               
329-636
               

               
Cow position:
               
chr6:51893717-51893391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 223
               

               
Conread position:
               
329-636
               

               
Cow position:
               
chr6:55936180-55935869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
329-636
               

               
Cow position:
               
chr6:58073841-58074157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 186
               

               
Conread position:
               
329-637
               

               
Cow position:
               
chr6:54369103-54368794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-642
               

               
Cow position:
               
chr6:12629821-12630134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
329-642
               

               
Cow position:
               
chr6:57164226-57164544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
329-644
               

               
Cow position:
               
chr6:16746136-16746462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
329-653
               

               
Cow position:
               
chr6:56376551-56376223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
329-662
               

               
Cow position:
               
chr6:38641294-38641627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-662
               

               
Cow position:
               
chr6:49002928-49002605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
329-662
               

               
Cow position:
               
chr6:51674714-51675042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-676
               

               
Cow position:
               
chr6:54864870-54864515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-679
               

               
Cow position:
               
chr6:38218468-38218814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 217
               

               
Conread position:
               
329-688
               

               
Cow position:
               
chr6:7989617-7989259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
329-690
               

               
Cow position:
               
chr6:53651836-53652199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 204
               

               
Conread position:
               
329-692
               

               
Cow position:
               
chr6:42961571-42961202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 254
               

               
Conread position:
               
329-693
               

               
Cow position:
               
chr6:6098486-6098096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
329-693
               

               
Cow position:
               
chr6:21110765-21111113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
329-698
               

               
Cow position:
               
chr6:14958553-14958171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 352
               

               
Conread position:
               
329-711
               

               
Cow position:
               
chr6:54430615-54431021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
329-712
               

               
Cow position:
               
chr6:6060761-6060378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
329-716
               

               
Cow position:
               
chr6:54867307-54867713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
329-738
               

               
Cow position:
               
chr6:21737086-21736685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
329-740
               

               
Cow position:
               
chr6:28482811-28483236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 202
               

               
Conread position:
               
329-746
               

               
Cow position:
               
chr6:45690797-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
329-749
               

               
Cow position:
               
chr6:24902345-24901927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
329-750
               

               
Cow position:
               
chr6:38207699-38207257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
329-756
               

               
Cow position:
               
chr6:34196352-34195927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 208
               

               
Conread position:
               
329-759
               

               
Cow position:
               
chr6:17414657-17414212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr6:7539369-7539814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 169
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr6:21004451-21004924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 211
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr6:21534855-21535283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr6:28084220-28083785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr6:56849814-56850260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:611357-611788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
76, 135
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:4468543-4469010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 223
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:5095754-5095295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:15301021-15300596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 78
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:17090395-17090825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:17997519-17997073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 212
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:49421980-49421552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:53460775-53460326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:55282493-55282047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:57405328-57404892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:61631823-61631364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr6:62324786-62325236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 202
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:6063483-6063047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:9008815-9008379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 214
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:10176505-10176051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:11192656-11192235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 75
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:14949685-14949246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 205
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:50090436-50090890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:54365526-54365084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:61515401-61514950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
329-766
               

               
Cow position:
               
chr6:67187487-67187926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
92, 63
               

               
Conread position:
               
329-767
               

               
Cow position:
               
chr6:38771092-38771516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
329-767
               

               
Cow position:
               
chr6:65903820-65903380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
329-768
               

               
Cow position:
               
chr6:10106200-10105736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 391
               

               
Conread position:
               
330-579
               

               
Cow position:
               
chr6:13592507-13592761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 136
               

               
Conread position:
               
330-579
               

               
Cow position:
               
chr6:58172982-58173237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
330-633
               

               
Cow position:
               
chr6:50746778-50747103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
330-636
               

               
Cow position:
               
chr6:67456500-67456827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
330-651
               

               
Cow position:
               
chr6:63272816-63272485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
330-653
               

               
Cow position:
               
chr6:16625745-16626075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
330-653
               

               
Cow position:
               
chr6:66131105-66131432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
330-700
               

               
Cow position:
               
chr6:6400745-6401131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
330-747
               

               
Cow position:
               
chr6:12337782-12338216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
330-748
               

               
Cow position:
               
chr6:15305383-15305798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
330-763
               

               
Cow position:
               
chr6:66433745-66434196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
331-470
               

               
Cow position:
               
chr6:22986192-22986049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
331-579
               

               
Cow position:
               
chr6:52025857-52025598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
331-580
               

               
Cow position:
               
chr6:31425765-31425507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
331-583
               

               
Cow position:
               
chr6:56041824-56041567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 100
               

               
Conread position:
               
331-633
               

               
Cow position:
               
chr6:60442217-60442515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
331-634
               

               
Cow position:
               
chr6:9452971-9452663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
331-636
               

               
Cow position:
               
chr6:57685957-57686258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
331-652
               

               
Cow position:
               
chr6:28318207-28318522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 98
               

               
Conread position:
               
331-653
               

               
Cow position:
               
chr6:36652220-36652548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
331-714
               

               
Cow position:
               
chr6:40713705-40713315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 215
               

               
Conread position:
               
331-740
               

               
Cow position:
               
chr6:35842455-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
331-748
               

               
Cow position:
               
chr6:51581460-51581028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 186
               

               
Conread position:
               
331-749
               

               
Cow position:
               
chr6:15938054-15937624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
331-759
               

               
Cow position:
               
chr6:323512-323064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 204
               

               
Conread position:
               
331-765
               

               
Cow position:
               
chr6:10400097-10399664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
331-768
               

               
Cow position:
               
chr6:65870822-65871278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 314
               

               
Conread position:
               
332-490
               

               
Cow position:
               
chr6:46245524-46245357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
332-534
               

               
Cow position:
               
chr6:10332297-10332083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
332-581
               

               
Cow position:
               
chr6:20231026-20230772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
332-693
               

               
Cow position:
               
chr6:59069829-59069458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 341
               

               
Conread position:
               
332-758
               

               
Cow position:
               
chr6:21231335-21231749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 73
               

               
Conread position:
               
333-583
               

               
Cow position:
               
chr6:47150579-47150848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
333-765
               

               
Cow position:
               
chr6:53024998-53024567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
334-501
               

               
Cow position:
               
chr6:37603324-37603496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
334-566
               

               
Cow position:
               
chr6:46400604-46400374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
334-637
               

               
Cow position:
               
chr6:899483-899183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
334-640
               

               
Cow position:
               
chr6:63299222-63298918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
334-659
               

               
Cow position:
               
chr6:20329822-20330139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
334-688
               

               
Cow position:
               
chr6:8788236-8787880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
334-712
               

               
Cow position:
               
chr6:7190318-7189937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 230
               

               
Conread position:
               
334-731
               

               
Cow position:
               
chr6:26915131-26915538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
334-749
               

               
Cow position:
               
chr6:19401663-19402073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
334-749
               

               
Cow position:
               
chr6:65702600-65702181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
334-758
               

               
Cow position:
               
chr6:23532464-23532883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
334-758
               

               
Cow position:
               
chr6:67950760-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
335-451
               

               
Cow position:
               
chr6:6117747-6117629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
335-576
               

               
Cow position:
               
chr6:415897-416155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
335-633
               

               
Cow position:
               
chr6:12092182-12091887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 95
               

               
Conread position:
               
335-636
               

               
Cow position:
               
chr6:54701342-54701650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 167
               

               
Conread position:
               
335-637
               

               
Cow position:
               
chr6:46865791-46865482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 197
               

               
Conread position:
               
335-719
               

               
Cow position:
               
chr6:2547045-2547454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
335-762
               

               
Cow position:
               
chr6:48187779-48187333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 197
               

               
Conread position:
               
336-652
               

               
Cow position:
               
chr6:9751237-9750932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
337-580
               

               
Cow position:
               
chr6:53731325-53731577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
337-624
               

               
Cow position:
               
chr6:62925189-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
337-637
               

               
Cow position:
               
chr6:25407588-25407281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 193
               

               
Conread position:
               
337-662
               

               
Cow position:
               
chr6:16423503-16423836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 299
               

               
Conread position:
               
337-700
               

               
Cow position:
               
chr6:37199741-37199357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 269
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chr6:7128598-7128166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
337-766
               

               
Cow position:
               
chr6:10612670-10613075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
337-768
               

               
Cow position:
               
chr6:47305143-47305589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 333
               

               
Conread position:
               
338-457
               

               
Cow position:
               
chr6:12116248-12116123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
338-476
               

               
Cow position:
               
chr6:1002428-1002287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
338-579
               

               
Cow position:
               
chr6:7824566-7824818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
338-631
               

               
Cow position:
               
chr6:37467734-37467436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
69, 140
               

               
Conread position:
               
338-739
               

               
Cow position:
               
chr6:63720004-63720410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
338-751
               

               
Cow position:
               
chr6:21456885-21456447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 327
               

               
Conread position:
               
338-763
               

               
Cow position:
               
chr6:18447704-18447273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 121
               

               
Conread position:
               
339-637
               

               
Cow position:
               
chr6:25008519-25008829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
339-766
               

               
Cow position:
               
chr6:29484897-29485328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
340-582
               

               
Cow position:
               
chr6:607069-607316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 141
               

               
Conread position:
               
340-616
               

               
Cow position:
               
chr6:60239585-60239304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 158
               

               
Conread position:
               
340-647
               

               
Cow position:
               
chr6:51387569-51387868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
340-679
               

               
Cow position:
               
chr6:4864733-4864399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 78
               

               
Conread position:
               
340-749
               

               
Cow position:
               
chr6:21062076-21061663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
344-636
               

               
Cow position:
               
chr6:30973852-30974151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
344-653
               

               
Cow position:
               
chr6:24004359-24004662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
345-759
               

               
Cow position:
               
chr6:47574717-47575130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 204
               

               
Conread position:
               
347-599
               

               
Cow position:
               
chr6:49410875-49410625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
348-623
               

               
Cow position:
               
chr6:53519808-53519528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
348-653
               

               
Cow position:
               
chr6:47799113-47799419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 53
               

               
Conread position:
               
348-679
               

               
Cow position:
               
chr6:66531990-66531674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
348-741
               

               
Cow position:
               
chr6:52412669-52413082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
59, 190
               

               
Conread position:
               
348-750
               

               
Cow position:
               
chr6:46292523-46292126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
348-763
               

               
Cow position:
               
chr6:50577335-50577758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 224
               

               
Conread position:
               
349-580
               

               
Cow position:
               
chr6:47989002-47989225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
349-714
               

               
Cow position:
               
chr6:37149009-37149380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
349-765
               

               
Cow position:
               
chr6:63252107-63251676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 184
               

               
Conread position:
               
350-625
               

               
Cow position:
               
chr6:67968797-67968512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
350-687
               

               
Cow position:
               
chr6:60057839-60057495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 190
               

               
Conread position:
               
351-652
               

               
Cow position:
               
chr6:26910051-26909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 191
               

               
Conread position:
               
354-574
               

               
Cow position:
               
chr6:18968952-18968733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
354-636
               

               
Cow position:
               
chr6:582446-582164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
354-653
               

               
Cow position:
               
chr6:52901062-52901364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
355-643
               

               
Cow position:
               
chr6:1499460-1499759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
52, 208
               

               
Conread position:
               
358-633
               

               
Cow position:
               
chr6:59798493-59798753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
358-737
               

               
Cow position:
               
chr6:8125157-8125545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
359-679
               

               
Cow position:
               
chr6:35993403-35993731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 157
               

               
Conread position:
               
361-633
               

               
Cow position:
               
chr6:17334229-17333947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 193
               

               
Conread position:
               
361-692
               

               
Cow position:
               
chr6:47355652-47355983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
362-676
               

               
Cow position:
               
chr6:27888179-27888496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
362-748
               

               
Cow position:
               
chr6:39093573-39093972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
366-694
               

               
Cow position:
               
chr6:47640604-47640272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
368-768
               

               
Cow position:
               
chr6:60850555-60850131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 185
               

               
Conread position:
               
369-765
               

               
Cow position:
               
chr6:60783706-60784118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
370-626
               

               
Cow position:
               
chr6:59108779-59109044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
370-764
               

               
Cow position:
               
chr6:14914402-14913988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
370-766
               

               
Cow position:
               
chr6:15243088-15243503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
31, 374
               

               
Conread position:
               
371-652
               

               
Cow position:
               
chr6:12543095-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
373-636
               

               
Cow position:
               
chr6:55763694-55763962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
373-764
               

               
Cow position:
               
chr6:120079-120481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
375-637
               

               
Cow position:
               
chr6:61608349-61608622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
376-749
               

               
Cow position:
               
chr6:60739858-60740238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
380-685
               

               
Cow position:
               
chr6:67323163-67323463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
380-700
               

               
Cow position:
               
chr6:58590121-58590443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
380-766
               

               
Cow position:
               
chr6:19264653-19264257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
381-636
               

               
Cow position:
               
chr6:4692136-4691866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 246
               

               
Conread position:
               
385-688
               

               
Cow position:
               
chr6:46283146-46282847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
385-749
               

               
Cow position:
               
chr6:54036283-54035912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
391-760
               

               
Cow position:
               
chr6:38609826-38610213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 152
               

               
Conread position:
               
397-748
               

               
Cow position:
               
chr6:67618090-67617720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
397-766
               

               
Cow position:
               
chr6:35725960-35726335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
406-662
               

               
Cow position:
               
chr6:50975933-50976183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
406-748
               

               
Cow position:
               
chr6:60118021-60118369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
406-763
               

               
Cow position:
               
chr6:25615225-25614848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
406-763
               

               
Cow position:
               
chr6:62669745-62670114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
406-765
               

               
Cow position:
               
chr6:23402114-23401751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
407-768
               

               
Cow position:
               
chr6:32287516-32287879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
408-759
               

               
Cow position:
               
chr6:17313611-17313976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
408-762
               

               
Cow position:
               
chr6:15447327-15446952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 334
               

               
Conread position:
               
409-618
               

               
Cow position:
               
chr6:12829344-12829134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
409-721
               

               
Cow position:
               
chr6:38640109-38640435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 208
               

               
Conread position:
               
415-729
               

               
Cow position:
               
chr6:58597620-58597301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 90
               

               
Conread position:
               
418-766
               

               
Cow position:
               
chr6:22850358-22850007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
421-761
               

               
Cow position:
               
chr6:59603317-59602972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
426-603
               

               
Cow position:
               
chr6:37376622-37376438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
427-747
               

               
Cow position:
               
chr6:7119714-7119404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
430-766
               

               
Cow position:
               
chr6:60274107-60273766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
431-721
               

               
Cow position:
               
chr6:61524301-61524003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
432-749
               

               
Cow position:
               
chr6:17794855-17794527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
435-658
               

               
Cow position:
               
chr6:66375426-66375202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
435-748
               

               
Cow position:
               
chr6:19292702-19293025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 296
               

               
Conread position:
               
439-637
               

               
Cow position:
               
chr6:17245698-17245503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
444-700
               

               
Cow position:
               
chr6:37332021-37332292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
444-763
               

               
Cow position:
               
chr6:143454-143135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
444-766
               

               
Cow position:
               
chr6:37462936-37463248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 214
               

               
Conread position:
               
451-637
               

               
Cow position:
               
chr6:23466108-23465924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
455-749
               

               
Cow position:
               
chr6:22985933-22985634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 190
               

               
Conread position:
               
455-759
               

               
Cow position:
               
chr6:694222-693907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
181, 86
               

               
Conread position:
               
456-718
               

               
Cow position:
               
chr6:20929590-20929331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
456-761
               

               
Cow position:
               
chr6:17068723-17068414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 271
               

               
Conread position:
               
457-721
               

               
Cow position:
               
chr6:2153664-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
187, 11
               

               
Conread position:
               
462-749
               

               
Cow position:
               
chr6:18118120-18117823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
462-758
               

               
Cow position:
               
chr6:5330347-5330651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
465-627
               

               
Cow position:
               
chr6:67615496-67615330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
473-688
               

               
Cow position:
               
chr6:31078924-31078712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
474-752
               

               
Cow position:
               
chr6:2584890-2585171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
164, 16
               

               
Conread position:
               
474-766
               

               
Cow position:
               
chr6:3350968-3351276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
478-662
               

               
Cow position:
               
chr6:68652400-68652216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
478-763
               

               
Cow position:
               
chr6:60468190-60468474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
479-763
               

               
Cow position:
               
chr6:59438494-59438218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
482-737
               

               
Cow position:
               
chr6:36921018-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
482-762
               

               
Cow position:
               
chr6:30023850-30024119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
483-764
               

               
Cow position:
               
chr6:37395451-37395162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 203
               

               
Conread position:
               
483-765
               

               
Cow position:
               
chr6:2078863-2078571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
489-766
               

               
Cow position:
               
chr6:66570400-66570670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
492-765
               

               
Cow position:
               
chr6:68685520-68685784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
498-763
               

               
Cow position:
               
chr6:67451401-67451129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
500-662
               

               
Cow position:
               
chr6:32853160-32853322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
500-748
               

               
Cow position:
               
chr6:19259371-19259131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
501-659
               

               
Cow position:
               
chr6:49437307-49437465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
501-662
               

               
Cow position:
               
chr6:67643716-67643556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
501-684
               

               
Cow position:
               
chr6:60266207-60266030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
501-743
               

               
Cow position:
               
chr6:34119380-34119141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
501-761
               

               
Cow position:
               
chr6:62056587-62056852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 224
               

               
Conread position:
               
502-759
               

               
Cow position:
               
chr6:47540871-47540602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
502-759
               

               
Cow position:
               
chr6:50504429-50504694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 227
               

               
Conread position:
               
505-693
               

               
Cow position:
               
chr6:60516805-60516987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
506-653
               

               
Cow position:
               
chr6:53089987-53090135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
507-763
               

               
Cow position:
               
chr6:53546016-53546271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
158, 23
               

               
Conread position:
               
515-765
               

               
Cow position:
               
chr6:35319145-35318889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
527-765
               

               
Cow position:
               
chr6:42034773-42035014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
528-762
               

               
Cow position:
               
chr6:21470427-21470190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
530-758
               

               
Cow position:
               
chr6:61109790-61110019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 97
               

               
Conread position:
               
531-763
               

               
Cow position:
               
chr6:29775626-29775859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
101, 141
               

               
Conread position:
               
535-760
               

               
Cow position:
               
chr6:57079432-57079665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 6
               

               
Conread position:
               
537-765
               

               
Cow position:
               
chr6:54127803-54127577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 90
               

               
Conread position:
               
541-746
               

               
Cow position:
               
chr6:12761295-12761505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 7
               

               
Conread position:
               
555-763
               

               
Cow position:
               
chr6:51933582-51933781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
558-761
               

               
Cow position:
               
chr6:16090934-16091138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
106, 163
               

               
Conread position:
               
558-763
               

               
Cow position:
               
chr6:23938091-23938294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
126, 101
               

               
Conread position:
               
591-757
               

               
Cow position:
               
chr6:58173413-58173578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
592-765
               

               
Cow position:
               
chr6:43540186-43540018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
6, 68
               
Show alignments to all cow chromosomes.