Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8027O04.5
        

               Conread position:
               1-110
               

               Cow position:
               chr1:17189359-17189250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               87
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-110
               

               Cow position:
               chr1:61069954-61070065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               91
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-159
               

               Cow position:
               chr1:21306617-21306779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1-165
               

               Cow position:
               chr1:33549402-33549237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               132, 108
               

               Conread position:
               1-165
               

               Cow position:
               chr1:81289422-81289587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               132, 111
               

               Conread position:
               1-165
               

               Cow position:
               chr1:82862796-82862964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               1-165
               

               Cow position:
               chr1:97225288-97225120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1-191
               

               Cow position:
               chr1:92554808-92554623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               103, 46
               

               Conread position:
               1-195
               

               Cow position:
               chr1:4210396-4210594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1-197
               

               Cow position:
               chr1:47161119-47160920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               1-198
               

               Cow position:
               chr1:92281319-92281127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               69, 33
               

               Conread position:
               1-204
               

               Cow position:
               chr1:56165810-56166013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               137, 200
               

               Conread position:
               1-204
               

               Cow position:
               chr1:69405294-69405500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               109, 202
               

               Conread position:
               1-205
               

               Cow position:
               chr1:16117218-16117429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               112, 206
               

               Conread position:
               1-212
               

               Cow position:
               chr1:42890767-42890558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               109, 169
               

               Conread position:
               1-225
               

               Cow position:
               chr1:65570821-65570593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-227
               

               Cow position:
               chr1:73019665-73019434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               114, 57
               

               Conread position:
               1-233
               

               Cow position:
               chr1:18280984-18281229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1-264
               

               Cow position:
               chr1:69768859-69769134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               105, 147
               

               Conread position:
               1-264
               

               Cow position:
               chr1:89768245-89767979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               112, 21
               

               Conread position:
               1-287
               

               Cow position:
               chr1:28279898-28280188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               105, 204
               

               Conread position:
               1-288
               

               Cow position:
               chr1:65611595-65611876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               109, 47
               

               Conread position:
               1-289
               

               Cow position:
               chr1:46175909-46175619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               107, 249
               

               Conread position:
               1-290
               

               Cow position:
               chr1:67910837-67911133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 181
               

               Conread position:
               1-294
               

               Cow position:
               chr1:19184024-19183730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               128, 111
               

               Conread position:
               1-297
               

               Cow position:
               chr1:67003439-67003736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               109, 173
               

               Conread position:
               1-301
               

               Cow position:
               chr1:70389258-70388954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 37
               

               Conread position:
               1-304
               

               Cow position:
               chr1:88133057-88133365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-305
               

               Cow position:
               chr1:23970676-23970367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 25
               

               Conread position:
               1-305
               

               Cow position:
               chr1:73763314-73763008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               222
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               69, 134
               

               Conread position:
               1-310
               

               Cow position:
               chr1:29534179-29533866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 206
               

               Conread position:
               1-310
               

               Cow position:
               chr1:30439125-30439439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-310
               

               Cow position:
               chr1:31596258-31596573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               94, 177
               

               Conread position:
               1-310
               

               Cow position:
               chr1:82566378-82566692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-315
               

               Cow position:
               chr1:34694976-34695296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               112, 251
               

               Conread position:
               1-351
               

               Cow position:
               chr1:1827521-1827181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               103, 68
               

               Conread position:
               1-353
               

               Cow position:
               chr1:82368028-82368380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               132, 111
               

               Conread position:
               1-360
               

               Cow position:
               chr1:26585407-26585768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               248
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               106, 39
               

               Conread position:
               1-365
               

               Cow position:
               chr1:69025702-69025331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-368
               

               Cow position:
               chr1:72085784-72086159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-370
               

               Cow position:
               chr1:29036599-29036972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-372
               

               Cow position:
               chr1:17438783-17438414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               109, 166
               

               Conread position:
               1-372
               

               Cow position:
               chr1:58274270-58274650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 178
               

               Conread position:
               1-373
               

               Cow position:
               chr1:48249183-48249561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               258
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               128, 111
               

               Conread position:
               1-376
               

               Cow position:
               chr1:81778737-81779117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               109, 21
               

               Conread position:
               1-381
               

               Cow position:
               chr1:27114223-27113836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 69
               

               Conread position:
               1-381
               

               Cow position:
               chr1:66487507-66487902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               269
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-381
               

               Cow position:
               chr1:89110897-89111283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-382
               

               Cow position:
               chr1:73439914-73439522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-383
               

               Cow position:
               chr1:62803594-62803199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-383
               

               Cow position:
               chr1:102432744-102432360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               99, 207
               

               Conread position:
               1-384
               

               Cow position:
               chr1:55778861-55779254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 207
               

               Conread position:
               1-395
               

               Cow position:
               chr1:52336679-52336280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               98, 202
               

               Conread position:
               1-395
               

               Cow position:
               chr1:57525352-57525764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               203, 111
               

               Conread position:
               1-405
               

               Cow position:
               chr1:25225090-25225503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               103, 140
               

               Conread position:
               1-406
               

               Cow position:
               chr1:3932973-3932551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               282
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               80, 214
               

               Conread position:
               1-409
               

               Cow position:
               chr1:30075159-30075570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               102, 155
               

               Conread position:
               1-409
               

               Cow position:
               chr1:79254345-79254771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               105, 181
               

               Conread position:
               1-418
               

               Cow position:
               chr1:77104753-77104325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               284
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               102, 210
               

               Conread position:
               1-418
               

               Cow position:
               chr1:99017779-99017348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 225
               

               Conread position:
               1-422
               

               Cow position:
               chr1:65388562-65388991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 149
               

               Conread position:
               1-426
               

               Cow position:
               chr1:76749686-76749254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               283
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               128, 111
               

               Conread position:
               1-452
               

               Cow position:
               chr1:23657451-23657903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               304
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               1-452
               

               Cow position:
               chr1:98616505-98616054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               50, 70
               

               Conread position:
               1-459
               

               Cow position:
               chr1:32961962-32962417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 133
               

               Conread position:
               1-476
               

               Cow position:
               chr1:5300809-5300324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-477
               

               Cow position:
               chr1:9378255-9377769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-482
               

               Cow position:
               chr1:49971871-49971384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 111
               

               Conread position:
               1-490
               

               Cow position:
               chr1:22844759-22845221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               314
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               297, 95
               

               Conread position:
               1-495
               

               Cow position:
               chr1:61728985-61728514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 60
               

               Conread position:
               1-499
               

               Cow position:
               chr1:91672602-91672094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-499
               

               Cow position:
               chr1:96093748-96094229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               321
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               87, 30
               

               Conread position:
               1-511
               

               Cow position:
               chr1:67000635-67000115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-511
               

               Cow position:
               chr1:98094655-98095172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 356
               

               Conread position:
               1-525
               

               Cow position:
               chr1:56620516-56621050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-526
               

               Cow position:
               chr1:71678223-71677700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 91
               

               Conread position:
               1-532
               

               Cow position:
               chr1:30693360-30693891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 63
               

               Conread position:
               1-538
               

               Cow position:
               chr1:22907144-22907693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-543
               

               Cow position:
               chr1:21432165-21431636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               1-546
               

               Cow position:
               chr1:20831138-20831685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 28
               

               Conread position:
               1-551
               

               Cow position:
               chr1:59206792-59206232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 194
               

               Conread position:
               1-558
               

               Cow position:
               chr1:6770839-6771400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 390
               

               Conread position:
               1-574
               

               Cow position:
               chr1:15437639-15437059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 169
               

               Conread position:
               1-574
               

               Cow position:
               chr1:18226663-18227227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 97
               

               Conread position:
               1-574
               

               Cow position:
               chr1:21115121-21114550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 71
               

               Conread position:
               1-575
               

               Cow position:
               chr1:36539792-36540364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 25
               

               Conread position:
               1-604
               

               Cow position:
               chr1:19237228-19236621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 134
               

               Conread position:
               1-605
               

               Cow position:
               chr1:27543418-27544021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 206
               

               Conread position:
               1-609
               

               Cow position:
               chr1:28175925-28175310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 414
               

               Conread position:
               1-614
               

               Cow position:
               chr1:85294397-85295016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               383
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               102, 14
               

               Conread position:
               1-620
               

               Cow position:
               chr1:53395793-53396435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 437
               

               Conread position:
               1-621
               

               Cow position:
               chr1:17401031-17400423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 101
               

               Conread position:
               1-622
               

               Cow position:
               chr1:76702368-76701748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 111
               

               Conread position:
               1-623
               

               Cow position:
               chr1:82654928-82655554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 442
               

               Conread position:
               1-627
               

               Cow position:
               chr1:22631725-22631098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               1-651
               

               Cow position:
               chr1:25054566-25055217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 111
               

               Conread position:
               1-651
               

               Cow position:
               chr1:30532736-30532086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 111
               

               Conread position:
               1-651
               

               Cow position:
               chr1:39538750-39538100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 175
               

               Conread position:
               1-651
               

               Cow position:
               chr1:57422531-57421879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               660
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 112
               

               Conread position:
               1-658
               

               Cow position:
               chr1:41780827-41780155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 31
               

               Conread position:
               1-665
               

               Cow position:
               chr1:86612387-86613045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               675
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 71
               

               Conread position:
               1-673
               

               Cow position:
               chr1:72113286-72113959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 14
               

               Conread position:
               1-682
               

               Cow position:
               chr1:84442711-84442014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 54
               

               Conread position:
               1-687
               

               Cow position:
               chr1:11855993-11855302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 8
               

               Conread position:
               1-695
               

               Cow position:
               chr1:18194903-18195605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 38
               

               Conread position:
               1-702
               

               Cow position:
               chr1:10012020-10011323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 51
               

               Conread position:
               1-702
               

               Cow position:
               chr1:18138189-18137477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 179
               

               Conread position:
               1-704
               

               Cow position:
               chr1:77164766-77165463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 113
               

               Conread position:
               1-704
               

               Cow position:
               chr1:81667234-81666526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               453
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               72, 161
               

               Conread position:
               1-705
               

               Cow position:
               chr1:40577213-40577930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-705
               

               Cow position:
               chr1:74284394-74283677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 73
               

               Conread position:
               1-707
               

               Cow position:
               chr1:13252239-13251526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-710
               

               Cow position:
               chr1:67297749-67298411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 38
               

               Conread position:
               1-711
               

               Cow position:
               chr1:56191868-56191154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 80
               

               Conread position:
               1-712
               

               Cow position:
               chr1:23097919-23098650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               1-713
               

               Cow position:
               chr1:51966556-51967261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               554
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 332
               

               Conread position:
               1-713
               

               Cow position:
               chr1:57695375-57694647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 41
               

               Conread position:
               1-714
               

               Cow position:
               chr1:55274756-55274036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 134
               

               Conread position:
               1-714
               

               Cow position:
               chr1:79112733-79113435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 30
               

               Conread position:
               1-715
               

               Cow position:
               chr1:22618119-22617409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 111
               

               Conread position:
               1-716
               

               Cow position:
               chr1:6198016-6197274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 210
               

               Conread position:
               1-716
               

               Cow position:
               chr1:29364688-29365410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-716
               

               Cow position:
               chr1:29949523-29948817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 112
               

               Conread position:
               1-716
               

               Cow position:
               chr1:41518533-41517825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 69
               

               Conread position:
               1-716
               

               Cow position:
               chr1:53422171-53422900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 196
               

               Conread position:
               1-717
               

               Cow position:
               chr1:9260785-9261515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 153
               

               Conread position:
               1-717
               

               Cow position:
               chr1:21995731-21995010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 44
               

               Conread position:
               1-717
               

               Cow position:
               chr1:50940735-50940019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 108
               

               Conread position:
               1-717
               

               Cow position:
               chr1:56142071-56141350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 131
               

               Conread position:
               1-717
               

               Cow position:
               chr1:57364055-57363328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 211
               

               Conread position:
               1-717
               

               Cow position:
               chr1:57744927-57744224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 193
               

               Conread position:
               1-717
               

               Cow position:
               chr1:73065058-73064332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-717
               

               Cow position:
               chr1:86507341-86506622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 50
               

               Conread position:
               1-718
               

               Cow position:
               chr1:3669817-3669121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 152
               

               Conread position:
               1-718
               

               Cow position:
               chr1:5504217-5504942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:8555969-8556690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 38
               

               Conread position:
               1-718
               

               Cow position:
               chr1:9526068-9525342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 21
               

               Conread position:
               1-718
               

               Cow position:
               chr1:10724901-10725628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:17010413-17009685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 247
               

               Conread position:
               1-718
               

               Cow position:
               chr1:21089726-21090454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:21354160-21353446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 63
               

               Conread position:
               1-718
               

               Cow position:
               chr1:21378281-21377554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 49
               

               Conread position:
               1-718
               

               Cow position:
               chr1:22726564-22727295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 498
               

               Conread position:
               1-718
               

               Cow position:
               chr1:23039395-23040100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:26812787-26812068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:27310750-27310050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 153
               

               Conread position:
               1-718
               

               Cow position:
               chr1:28713320-28714043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:28875353-28876096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 57
               

               Conread position:
               1-718
               

               Cow position:
               chr1:30064642-30065384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:31239949-31239224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 157
               

               Conread position:
               1-718
               

               Cow position:
               chr1:31813287-31814024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               755
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 152
               

               Conread position:
               1-718
               

               Cow position:
               chr1:32565642-32564923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 119
               

               Conread position:
               1-718
               

               Cow position:
               chr1:33351818-33352506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 122
               

               Conread position:
               1-718
               

               Cow position:
               chr1:33853562-33854286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:33898545-33899271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 218
               

               Conread position:
               1-718
               

               Cow position:
               chr1:38477592-38478309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 204
               

               Conread position:
               1-718
               

               Cow position:
               chr1:39546058-39546786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 21
               

               Conread position:
               1-718
               

               Cow position:
               chr1:40057394-40058109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:40533750-40533066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 51
               

               Conread position:
               1-718
               

               Cow position:
               chr1:40966116-40965401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:53310525-53311234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               1-718
               

               Cow position:
               chr1:55329116-55328415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:56725441-56726173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 210
               

               Conread position:
               1-718
               

               Cow position:
               chr1:57570115-57570835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 188
               

               Conread position:
               1-718
               

               Cow position:
               chr1:59484577-59483859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 140
               

               Conread position:
               1-718
               

               Cow position:
               chr1:61343427-61342707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:63603496-63602780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 51
               

               Conread position:
               1-718
               

               Cow position:
               chr1:64697382-64698087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 56
               

               Conread position:
               1-718
               

               Cow position:
               chr1:67832846-67832132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 59
               

               Conread position:
               1-718
               

               Cow position:
               chr1:69246120-69246827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 41
               

               Conread position:
               1-718
               

               Cow position:
               chr1:71560463-71559740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 133
               

               Conread position:
               1-718
               

               Cow position:
               chr1:72036998-72036303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 129
               

               Conread position:
               1-718
               

               Cow position:
               chr1:72184586-72183874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 207
               

               Conread position:
               1-718
               

               Cow position:
               chr1:72985742-72986462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 8
               

               Conread position:
               1-718
               

               Cow position:
               chr1:72996302-72996985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 165
               

               Conread position:
               1-718
               

               Cow position:
               chr1:73435046-73434321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:76619190-76618469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:76877311-76878036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:77747023-77747750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 202
               

               Conread position:
               1-718
               

               Cow position:
               chr1:79634272-79633548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:82478258-82478989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 121
               

               Conread position:
               1-718
               

               Cow position:
               chr1:82910542-82909825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 112
               

               Conread position:
               1-718
               

               Cow position:
               chr1:82921876-82921145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:85778170-85777455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 25
               

               Conread position:
               1-718
               

               Cow position:
               chr1:85794248-85794961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 204
               

               Conread position:
               1-718
               

               Cow position:
               chr1:86362753-86363477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 169
               

               Conread position:
               1-718
               

               Cow position:
               chr1:86545857-86545133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 134
               

               Conread position:
               1-718
               

               Cow position:
               chr1:86594023-86593300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:86704432-86705155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 119
               

               Conread position:
               1-718
               

               Cow position:
               chr1:88300627-88301352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 149
               

               Conread position:
               1-718
               

               Cow position:
               chr1:89483420-89484120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 36
               

               Conread position:
               1-718
               

               Cow position:
               chr1:89493938-89493208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 56
               

               Conread position:
               1-718
               

               Cow position:
               chr1:90973231-90973970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 38
               

               Conread position:
               1-718
               

               Cow position:
               chr1:91901311-91902023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:93856800-93857527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 111
               

               Conread position:
               1-718
               

               Cow position:
               chr1:94661957-94662658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:99108958-99108223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               547
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 156
               

               Conread position:
               1-718
               

               Cow position:
               chr1:99915716-99916444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 134
               

               Conread position:
               1-718
               

               Cow position:
               chr1:99988782-99989510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 203
               

               Conread position:
               1-718
               

               Cow position:
               chr1:100509028-100509755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 207
               

               Conread position:
               1-718
               

               Cow position:
               chr1:100708355-100709075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 14
               

               Conread position:
               1-718
               

               Cow position:
               chr1:102551271-102552016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 123
               

               Conread position:
               2-286
               

               Cow position:
               chr1:32627684-32627978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               2-351
               

               Cow position:
               chr1:18025451-18025099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               239, 90
               

               Conread position:
               2-450
               

               Cow position:
               chr1:8827343-8827799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               302
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               18, 25
               

               Conread position:
               2-527
               

               Cow position:
               chr1:27956153-27955645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               342
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               104, 204
               

               Conread position:
               2-715
               

               Cow position:
               chr1:76556435-76555715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               462
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               42, 262
               

               Conread position:
               2-716
               

               Cow position:
               chr1:101832695-101833409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 111
               

               Conread position:
               2-718
               

               Cow position:
               chr1:68603346-68602626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 26
               

               Conread position:
               2-720
               

               Cow position:
               chr1:98657645-98656941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 36
               

               Conread position:
               3-204
               

               Cow position:
               chr1:62921845-62922044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               3-222
               

               Cow position:
               chr1:2370822-2371046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               50, 159
               

               Conread position:
               3-227
               

               Cow position:
               chr1:27678583-27678360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               102, 148
               

               Conread position:
               3-313
               

               Cow position:
               chr1:23054703-23055016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               108, 148
               

               Conread position:
               3-336
               

               Cow position:
               chr1:76094579-76094241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               107, 322
               

               Conread position:
               3-378
               

               Cow position:
               chr1:71451346-71451727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               103, 127
               

               Conread position:
               3-447
               

               Cow position:
               chr1:64273295-64273738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               282
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               65, 58
               

               Conread position:
               3-453
               

               Cow position:
               chr1:62100524-62100082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               293
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               42, 86
               

               Conread position:
               3-456
               

               Cow position:
               chr1:88394361-88393915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               104, 199
               

               Conread position:
               3-522
               

               Cow position:
               chr1:68365582-68366108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 79
               

               Conread position:
               3-546
               

               Cow position:
               chr1:26516090-26515546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 132
               

               Conread position:
               3-679
               

               Cow position:
               chr1:57948345-57949026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 61
               

               Conread position:
               3-680
               

               Cow position:
               chr1:85666660-85665969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               436
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               215, 104
               

               Conread position:
               3-709
               

               Cow position:
               chr1:31497223-31497902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 104
               

               Conread position:
               3-714
               

               Cow position:
               chr1:88675766-88676485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 55
               

               Conread position:
               3-716
               

               Cow position:
               chr1:79454686-79453964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 12
               

               Conread position:
               3-716
               

               Cow position:
               chr1:85144155-85143442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 33
               

               Conread position:
               3-718
               

               Cow position:
               chr1:18963446-18962725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 151
               

               Conread position:
               3-718
               

               Cow position:
               chr1:31192101-31191411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 39
               

               Conread position:
               3-718
               

               Cow position:
               chr1:31363814-31363098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 150
               

               Conread position:
               3-718
               

               Cow position:
               chr1:40483970-40483286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 93
               

               Conread position:
               3-718
               

               Cow position:
               chr1:40510960-40510252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               3-718
               

               Cow position:
               chr1:40682455-40681727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 205
               

               Conread position:
               3-718
               

               Cow position:
               chr1:42738717-42739411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 80
               

               Conread position:
               3-718
               

               Cow position:
               chr1:52356968-52356264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 201
               

               Conread position:
               3-718
               

               Cow position:
               chr1:58339212-58339926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 109
               

               Conread position:
               3-718
               

               Cow position:
               chr1:70417567-70416867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 154
               

               Conread position:
               3-718
               

               Cow position:
               chr1:74304080-74303358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 73
               

               Conread position:
               3-718
               

               Cow position:
               chr1:76861806-76861052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               764
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 85
               

               Conread position:
               3-718
               

               Cow position:
               chr1:90606573-90605872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 110
               

               Conread position:
               4-310
               

               Cow position:
               chr1:58198109-58197790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               4-372
               

               Cow position:
               chr1:18273030-18272660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               114, 143
               

               Conread position:
               4-614
               

               Cow position:
               chr1:81839872-81839261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 20
               

               Conread position:
               4-707
               

               Cow position:
               chr1:88267822-88267144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               448
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               76, 44
               

               Conread position:
               4-716
               

               Cow position:
               chr1:51876514-51875799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 99
               

               Conread position:
               4-718
               

               Cow position:
               chr1:17034305-17033588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 11
               

               Conread position:
               9-222
               

               Cow position:
               chr1:72138340-72138555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               9-706
               

               Cow position:
               chr1:33391369-33392059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 100
               

               Conread position:
               9-714
               

               Cow position:
               chr1:35599523-35598804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 6
               

               Conread position:
               10-716
               

               Cow position:
               chr1:53366213-53366927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 194
               

               Conread position:
               12-592
               

               Cow position:
               chr1:33714378-33714968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 25
               

               Conread position:
               12-645
               

               Cow position:
               chr1:92008217-92007595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 110
               

               Conread position:
               15-248
               

               Cow position:
               chr1:91104294-91104524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               118, 97
               

               Conread position:
               15-571
               

               Cow position:
               chr1:81861720-81861173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 49
               

               Conread position:
               15-718
               

               Cow position:
               chr1:17939461-17938748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 97
               

               Conread position:
               16-619
               

               Cow position:
               chr1:99630172-99629574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 293
               

               Conread position:
               17-717
               

               Cow position:
               chr1:99980624-99981313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 5
               

               Conread position:
               18-574
               

               Cow position:
               chr1:67316435-67316993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 21
               

               Conread position:
               19-718
               

               Cow position:
               chr1:57971274-57970586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 201
               

               Conread position:
               22-507
               

               Cow position:
               chr1:44087214-44086721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 155
               

               Conread position:
               22-605
               

               Cow position:
               chr1:101672043-101671462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               380
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               12, 93
               

               Conread position:
               22-714
               

               Cow position:
               chr1:85787609-85788298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               433
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               238, 76
               

               Conread position:
               22-718
               

               Cow position:
               chr1:28568405-28567721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 78
               

               Conread position:
               23-367
               

               Cow position:
               chr1:18239482-18239130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               110, 89
               

               Conread position:
               23-452
               

               Cow position:
               chr1:77464404-77464832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               282
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               79, 35
               

               Conread position:
               23-703
               

               Cow position:
               chr1:68092964-68093646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               436
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               182, 65
               

               Conread position:
               23-716
               

               Cow position:
               chr1:32837053-32837715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               23-718
               

               Cow position:
               chr1:30649872-30649179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               716
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 63
               

               Conread position:
               26-519
               

               Cow position:
               chr1:52918148-52917651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 32
               

               Conread position:
               26-718
               

               Cow position:
               chr1:81341838-81342531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               28-716
               

               Cow position:
               chr1:42945725-42946382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               442
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               311, 83
               

               Conread position:
               29-204
               

               Cow position:
               chr1:28676429-28676598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               29-372
               

               Cow position:
               chr1:89124682-89125033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               81, 175
               

               Conread position:
               29-716
               

               Cow position:
               chr1:93426975-93426290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 124
               

               Conread position:
               29-718
               

               Cow position:
               chr1:44973616-44974304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 188
               

               Conread position:
               30-256
               

               Cow position:
               chr1:30494253-30494479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               174, 82
               

               Conread position:
               30-715
               

               Cow position:
               chr1:101011609-101010914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 82
               

               Conread position:
               32-319
               

               Cow position:
               chr1:65783005-65782716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               74, 104
               

               Conread position:
               34-718
               

               Cow position:
               chr1:30104250-30103573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 170
               

               Conread position:
               36-493
               

               Cow position:
               chr1:27990112-27989654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               302
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               76, 144
               

               Conread position:
               39-367
               

               Cow position:
               chr1:56645087-56645413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               169, 56
               

               Conread position:
               39-395
               

               Cow position:
               chr1:21457809-21458159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               165, 60
               

               Conread position:
               40-718
               

               Cow position:
               chr1:44677012-44677685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 43
               

               Conread position:
               42-687
               

               Cow position:
               chr1:19484666-19484022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 86
               

               Conread position:
               42-713
               

               Cow position:
               chr1:89187121-89186441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 173
               

               Conread position:
               42-717
               

               Cow position:
               chr1:11290283-11289602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 70
               

               Conread position:
               55-305
               

               Cow position:
               chr1:22252020-22252274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               58, 215
               

               Conread position:
               55-665
               

               Cow position:
               chr1:38384158-38383581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               55-711
               

               Cow position:
               chr1:14530122-14529461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               56-290
               

               Cow position:
               chr1:56630978-56631216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               54, 8
               

               Conread position:
               57-718
               

               Cow position:
               chr1:53310304-53309652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 147
               

               Conread position:
               57-718
               

               Cow position:
               chr1:58171101-58171744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 55
               

               Conread position:
               59-716
               

               Cow position:
               chr1:40747676-40747052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 163
               

               Conread position:
               63-718
               

               Cow position:
               chr1:87723338-87722683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 72
               

               Conread position:
               64-480
               

               Cow position:
               chr1:24922502-24922922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               64-651
               

               Cow position:
               chr1:30716343-30715745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 140
               

               Conread position:
               64-718
               

               Cow position:
               chr1:31415863-31415219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 12
               

               Conread position:
               66-620
               

               Cow position:
               chr1:7826314-7826879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 138
               

               Conread position:
               74-718
               

               Cow position:
               chr1:24441693-24441043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 211
               

               Conread position:
               75-718
               

               Cow position:
               chr1:79913305-79913930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               660
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 104
               

               Conread position:
               78-689
               

               Cow position:
               chr1:43569125-43568522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               79-718
               

               Cow position:
               chr1:27493357-27493975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               650
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 17
               

               Conread position:
               81-718
               

               Cow position:
               chr1:46838157-46838799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               656
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 284
               

               Conread position:
               81-718
               

               Cow position:
               chr1:68456640-68457265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 31
               

               Conread position:
               83-264
               

               Cow position:
               chr1:61025048-61025234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               30, 121
               

               Conread position:
               88-718
               

               Cow position:
               chr1:76872249-76872886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 115
               

               Conread position:
               89-693
               

               Cow position:
               chr1:44702409-44701797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 23
               

               Conread position:
               89-716
               

               Cow position:
               chr1:31401036-31400404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 44
               

               Conread position:
               92-591
               

               Cow position:
               chr1:67186219-67185724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 43
               

               Conread position:
               92-596
               

               Cow position:
               chr1:85824823-85825303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               332
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               25, 47
               

               Conread position:
               93-306
               

               Cow position:
               chr1:23754942-23754725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 111
               

               Conread position:
               96-718
               

               Cow position:
               chr1:61537620-61536991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 78
               

               Conread position:
               98-718
               

               Cow position:
               chr1:23189397-23189994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               394
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               81, 5
               

               Conread position:
               100-381
               

               Cow position:
               chr1:93517277-93517569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               67, 104
               

               Conread position:
               100-656
               

               Cow position:
               chr1:54392648-54392088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 9
               

               Conread position:
               105-696
               

               Cow position:
               chr1:59014951-59014363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 69
               

               Conread position:
               109-283
               

               Cow position:
               chr1:55144142-55144317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               120-718
               

               Cow position:
               chr1:61749026-61748439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               123-718
               

               Cow position:
               chr1:8471757-8471155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 272
               

               Conread position:
               123-718
               

               Cow position:
               chr1:70069066-70069669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 77
               

               Conread position:
               127-597
               

               Cow position:
               chr1:81305236-81305690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 67
               

               Conread position:
               127-707
               

               Cow position:
               chr1:82486007-82486584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               358
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               73, 21
               

               Conread position:
               132-409
               

               Cow position:
               chr1:38131053-38130770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               67, 72
               

               Conread position:
               133-718
               

               Cow position:
               chr1:3383900-3383313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 48
               

               Conread position:
               133-718
               

               Cow position:
               chr1:54115666-54116252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 131
               

               Conread position:
               133-718
               

               Cow position:
               chr1:54932339-54932932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 67
               

               Conread position:
               134-500
               

               Cow position:
               chr1:69920601-69920232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               73, 66
               

               Conread position:
               134-715
               

               Cow position:
               chr1:39481525-39480933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 105
               

               Conread position:
               137-314
               

               Cow position:
               chr1:72309470-72309290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               91, 150
               

               Conread position:
               138-612
               

               Cow position:
               chr1:76740434-76739952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 62
               

               Conread position:
               139-718
               

               Cow position:
               chr1:81926721-81926170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 61
               

               Conread position:
               145-605
               

               Cow position:
               chr1:21224896-21224428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 168
               

               Conread position:
               148-652
               

               Cow position:
               chr1:13438036-13437525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               148-702
               

               Cow position:
               chr1:22216330-22216879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 52
               

               Conread position:
               154-310
               

               Cow position:
               chr1:44129934-44129780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               154-579
               

               Cow position:
               chr1:45004681-45005114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               54, 46
               

               Conread position:
               154-681
               

               Cow position:
               chr1:56274193-56273660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 46
               

               Conread position:
               154-691
               

               Cow position:
               chr1:71898622-71899146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 181
               

               Conread position:
               154-718
               

               Cow position:
               chr1:90912263-90912833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 46
               

               Conread position:
               156-718
               

               Cow position:
               chr1:61139875-61140444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 26
               

               Conread position:
               158-596
               

               Cow position:
               chr1:38421188-38421612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 48
               

               Conread position:
               160-714
               

               Cow position:
               chr1:56745313-56745884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               162-708
               

               Cow position:
               chr1:48827114-48827665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               162-718
               

               Cow position:
               chr1:12059074-12058516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 11
               

               Conread position:
               166-701
               

               Cow position:
               chr1:101854671-101854130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 52
               

               Conread position:
               168-706
               

               Cow position:
               chr1:44949722-44950259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               353
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               173-495
               

               Cow position:
               chr1:89730054-89729728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               173-520
               

               Cow position:
               chr1:81289740-81290093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               173-567
               

               Cow position:
               chr1:100593465-100593065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               173-658
               

               Cow position:
               chr1:20003849-20003388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 81
               

               Conread position:
               173-702
               

               Cow position:
               chr1:22241184-22241714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 27
               

               Conread position:
               173-711
               

               Cow position:
               chr1:33548942-33548402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 22
               

               Conread position:
               173-718
               

               Cow position:
               chr1:77866029-77866583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 28
               

               Conread position:
               178-506
               

               Cow position:
               chr1:53208900-53208572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               178-527
               

               Cow position:
               chr1:78362290-78362640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               30, 74
               

               Conread position:
               178-651
               

               Cow position:
               chr1:51845149-51844696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               307
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               398, 18
               

               Conread position:
               178-716
               

               Cow position:
               chr1:82863275-82863821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 22
               

               Conread position:
               178-717
               

               Cow position:
               chr1:93112904-93112369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 115
               

               Conread position:
               178-718
               

               Cow position:
               chr1:34914066-34914599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               178-718
               

               Cow position:
               chr1:62926930-62927473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 22
               

               Conread position:
               179-485
               

               Cow position:
               chr1:29411699-29411389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               179-718
               

               Cow position:
               chr1:21544263-21544785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 45
               

               Conread position:
               179-718
               

               Cow position:
               chr1:97003049-97003572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               340
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               23, 85
               

               Conread position:
               180-614
               

               Cow position:
               chr1:3375626-3376059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 23
               

               Conread position:
               188-526
               

               Cow position:
               chr1:29935282-29934947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               188-628
               

               Cow position:
               chr1:100535629-100536060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 29
               

               Conread position:
               188-718
               

               Cow position:
               chr1:50256987-50257511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               342
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               10, 97
               

               Conread position:
               188-718
               

               Cow position:
               chr1:92280309-92279789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 129
               

               Conread position:
               191-718
               

               Cow position:
               chr1:102322626-102322096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 90
               

               Conread position:
               203-558
               

               Cow position:
               chr1:11017883-11018237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               25, 144
               

               Conread position:
               207-622
               

               Cow position:
               chr1:43511873-43511463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               263
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               209-718
               

               Cow position:
               chr1:21677300-21677805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 81
               

               Conread position:
               220-574
               

               Cow position:
               chr1:100911512-100911857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               84, 5
               

               Conread position:
               220-597
               

               Cow position:
               chr1:91596220-91595849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 89
               

               Conread position:
               221-706
               

               Cow position:
               chr1:16974605-16974132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               8, 97
               

               Conread position:
               221-712
               

               Cow position:
               chr1:77761464-77760970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               8, 88
               

               Conread position:
               221-718
               

               Cow position:
               chr1:67288912-67289415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 53
               

               Conread position:
               222-715
               

               Cow position:
               chr1:22760532-22761010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               327
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               7, 119
               

               Conread position:
               223-651
               

               Cow position:
               chr1:63048453-63048021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 133
               

               Conread position:
               223-718
               

               Cow position:
               chr1:16118005-16118480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 133
               

               Conread position:
               226-717
               

               Cow position:
               chr1:22346180-22346662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 126
               

               Conread position:
               227-521
               

               Cow position:
               chr1:54445346-54445046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               227-522
               

               Cow position:
               chr1:38400546-38400834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               56, 123
               

               Conread position:
               227-716
               

               Cow position:
               chr1:30306766-30306287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               330
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               74, 23
               

               Conread position:
               227-716
               

               Cow position:
               chr1:72138738-72139214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               343, 22
               

               Conread position:
               229-494
               

               Cow position:
               chr1:34860938-34860669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               66, 126
               

               Conread position:
               231-645
               

               Cow position:
               chr1:101796186-101796596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               98, 114
               

               Conread position:
               231-716
               

               Cow position:
               chr1:69405669-69406160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               232-574
               

               Cow position:
               chr1:56657739-56657396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               99, 129
               

               Conread position:
               232-675
               

               Cow position:
               chr1:54296820-54296392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 91
               

               Conread position:
               232-717
               

               Cow position:
               chr1:39142642-39142164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               319
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               232-718
               

               Cow position:
               chr1:60341563-60342055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               232-718
               

               Cow position:
               chr1:61332445-61331958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 86
               

               Conread position:
               241-681
               

               Cow position:
               chr1:28676612-28677049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 102
               

               Conread position:
               242-651
               

               Cow position:
               chr1:16273092-16273494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 76
               

               Conread position:
               242-717
               

               Cow position:
               chr1:70863564-70864042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 113
               

               Conread position:
               242-718
               

               Cow position:
               chr1:68430768-68431239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 29
               

               Conread position:
               242-718
               

               Cow position:
               chr1:91104565-91105046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 344
               

               Conread position:
               242-718
               

               Cow position:
               chr1:100420126-100420609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 151
               

               Conread position:
               243-643
               

               Cow position:
               chr1:100888423-100888822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               211, 76
               

               Conread position:
               243-716
               

               Cow position:
               chr1:18281508-18281984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 151
               

               Conread position:
               243-718
               

               Cow position:
               chr1:66972628-66972153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 145
               

               Conread position:
               244-595
               

               Cow position:
               chr1:18763778-18763436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               231, 63
               

               Conread position:
               244-596
               

               Cow position:
               chr1:79480441-79480099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               232, 6
               

               Conread position:
               245-664
               

               Cow position:
               chr1:82383932-82384345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 184
               

               Conread position:
               246-596
               

               Cow position:
               chr1:7139829-7139478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               249-526
               

               Cow position:
               chr1:63314576-63314296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               86, 70
               

               Conread position:
               251-716
               

               Cow position:
               chr1:29902648-29902182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 91
               

               Conread position:
               253-598
               

               Cow position:
               chr1:88293898-88294248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 141
               

               Conread position:
               253-719
               

               Cow position:
               chr1:75832573-75833040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 181
               

               Conread position:
               259-716
               

               Cow position:
               chr1:68847159-68846699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 138
               

               Conread position:
               267-718
               

               Cow position:
               chr1:81374461-81374006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 52
               

               Conread position:
               270-718
               

               Cow position:
               chr1:57659177-57659623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 166
               

               Conread position:
               270-718
               

               Cow position:
               chr1:61562598-61563041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 8
               

               Conread position:
               273-718
               

               Cow position:
               chr1:7196665-7196215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 46
               

               Conread position:
               274-645
               

               Cow position:
               chr1:42553904-42554270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 42
               

               Conread position:
               274-717
               

               Cow position:
               chr1:93250014-93250445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               269
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               56, 86
               

               Conread position:
               280-682
               

               Cow position:
               chr1:73445031-73444627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 26
               

               Conread position:
               280-718
               

               Cow position:
               chr1:33364409-33363965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 114
               

               Conread position:
               280-718
               

               Cow position:
               chr1:69769373-69769823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               282-718
               

               Cow position:
               chr1:44963910-44963472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 136
               

               Conread position:
               283-718
               

               Cow position:
               chr1:92554190-92553754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 222
               

               Conread position:
               285-511
               

               Cow position:
               chr1:29705348-29705127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               67, 31
               

               Conread position:
               286-651
               

               Cow position:
               chr1:57121230-57120869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 53
               

               Conread position:
               287-718
               

               Cow position:
               chr1:68275078-68275507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 151
               

               Conread position:
               287-718
               

               Cow position:
               chr1:89430974-89431407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 136
               

               Conread position:
               288-527
               

               Cow position:
               chr1:9281726-9281965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               68, 28
               

               Conread position:
               289-716
               

               Cow position:
               chr1:39250887-39250459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 53
               

               Conread position:
               292-718
               

               Cow position:
               chr1:92034673-92035102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 102
               

               Conread position:
               296-718
               

               Cow position:
               chr1:56424492-56424915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               302-714
               

               Cow position:
               chr1:67911356-67911754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               277, 30
               

               Conread position:
               302-718
               

               Cow position:
               chr1:81358058-81357639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 208
               

               Conread position:
               303-718
               

               Cow position:
               chr1:23579205-23578801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 24
               

               Conread position:
               308-602
               

               Cow position:
               chr1:44129434-44129134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 42
               

               Conread position:
               308-651
               

               Cow position:
               chr1:34726573-34726229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               308-657
               

               Cow position:
               chr1:26445823-26446167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 33
               

               Conread position:
               308-691
               

               Cow position:
               chr1:31530882-31531259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               315-559
               

               Cow position:
               chr1:82566800-82567047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               317-718
               

               Cow position:
               chr1:31317884-31317487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 32
               

               Conread position:
               319-717
               

               Cow position:
               chr1:25089060-25088669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 22
               

               Conread position:
               321-693
               

               Cow position:
               chr1:22252330-22252696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 117
               

               Conread position:
               327-614
               

               Cow position:
               chr1:52775955-52775668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               27, 21
               

               Conread position:
               327-704
               

               Cow position:
               chr1:65611944-65612318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               102, 22
               

               Conread position:
               327-715
               

               Cow position:
               chr1:30439602-30439988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 120
               

               Conread position:
               327-716
               

               Cow position:
               chr1:13580137-13579748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 6
               

               Conread position:
               327-716
               

               Cow position:
               chr1:97551199-97551587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 45
               

               Conread position:
               330-532
               

               Cow position:
               chr1:57069498-57069293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               331-718
               

               Cow position:
               chr1:8745114-8745502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               333-716
               

               Cow position:
               chr1:40919756-40920143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               334-718
               

               Cow position:
               chr1:4209294-4208909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 55
               

               Conread position:
               334-718
               

               Cow position:
               chr1:19184766-19185152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 15
               

               Conread position:
               335-546
               

               Cow position:
               chr1:32071560-32071771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               45, 60
               

               Conread position:
               337-605
               

               Cow position:
               chr1:59496319-59496586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               79, 12
               

               Conread position:
               337-657
               

               Cow position:
               chr1:33188692-33189005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               193, 79
               

               Conread position:
               337-702
               

               Cow position:
               chr1:98788421-98788782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 12
               

               Conread position:
               337-706
               

               Cow position:
               chr1:70388683-70388323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 12
               

               Conread position:
               337-718
               

               Cow position:
               chr1:7164713-7165095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 18
               

               Conread position:
               337-718
               

               Cow position:
               chr1:23970185-23969804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 71
               

               Conread position:
               337-718
               

               Cow position:
               chr1:49267506-49267887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 18
               

               Conread position:
               337-718
               

               Cow position:
               chr1:67005506-67005885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 18
               

               Conread position:
               337-718
               

               Cow position:
               chr1:81328160-81328537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               192, 20
               

               Conread position:
               337-720
               

               Cow position:
               chr1:29608476-29608093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 17
               

               Conread position:
               338-718
               

               Cow position:
               chr1:21576176-21576552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               339-718
               

               Cow position:
               chr1:63045510-63045889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 198
               

               Conread position:
               341-702
               

               Cow position:
               chr1:58088916-58088556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 13
               

               Conread position:
               341-718
               

               Cow position:
               chr1:72309049-72308682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 14
               

               Conread position:
               341-718
               

               Cow position:
               chr1:86600387-86600011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 10
               

               Conread position:
               341-718
               

               Cow position:
               chr1:101126497-101126131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               14, 140
               

               Conread position:
               342-519
               

               Cow position:
               chr1:40700278-40700102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               46, 7
               

               Conread position:
               342-713
               

               Cow position:
               chr1:14562583-14562207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               220, 103
               

               Conread position:
               342-718
               

               Cow position:
               chr1:24563106-24562733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               236, 7
               

               Conread position:
               342-718
               

               Cow position:
               chr1:24572493-24572120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               236, 7
               

               Conread position:
               342-718
               

               Cow position:
               chr1:61096126-61096502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 13
               

               Conread position:
               342-718
               

               Cow position:
               chr1:72598762-72599121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 7
               

               Conread position:
               342-718
               

               Cow position:
               chr1:82369058-82369431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 7
               

               Conread position:
               344-718
               

               Cow position:
               chr1:71794164-71794537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 235
               

               Conread position:
               345-718
               

               Cow position:
               chr1:89767966-89767592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 97
               

               Conread position:
               350-718
               

               Cow position:
               chr1:55144683-55145049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 76
               

               Conread position:
               354-718
               

               Cow position:
               chr1:31724950-31724594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 279
               

               Conread position:
               355-717
               

               Cow position:
               chr1:7635940-7636300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               82, 280
               

               Conread position:
               355-718
               

               Cow position:
               chr1:56169600-56169964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 339
               

               Conread position:
               355-720
               

               Cow position:
               chr1:91890752-91890385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 58
               

               Conread position:
               357-720
               

               Cow position:
               chr1:27113506-27113147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 72
               

               Conread position:
               358-718
               

               Cow position:
               chr1:38409866-38410213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               358-718
               

               Cow position:
               chr1:68949863-68950212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 87
               

               Conread position:
               359-691
               

               Cow position:
               chr1:53558184-53557855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               189, 72
               

               Conread position:
               361-718
               

               Cow position:
               chr1:57525932-57526280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               361-718
               

               Cow position:
               chr1:73762881-73762525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 180
               

               Conread position:
               366-592
               

               Cow position:
               chr1:89790653-89790435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               22, 28
               

               Conread position:
               370-715
               

               Cow position:
               chr1:55318985-55318644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 144
               

               Conread position:
               371-714
               

               Cow position:
               chr1:102776472-102776128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               111, 17
               

               Conread position:
               372-718
               

               Cow position:
               chr1:61203039-61203388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 0
               

               Conread position:
               375-613
               

               Cow position:
               chr1:61723242-61723016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               199, 16
               

               Conread position:
               379-511
               

               Cow position:
               chr1:52172183-52172051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               379-604
               

               Cow position:
               chr1:58274934-58275152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               195, 142
               

               Conread position:
               379-718
               

               Cow position:
               chr1:17437011-17436670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               379-718
               

               Cow position:
               chr1:29037206-29037546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               379-718
               

               Cow position:
               chr1:46613624-46613288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 54
               

               Conread position:
               379-718
               

               Cow position:
               chr1:72086262-72086600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 16
               

               Conread position:
               385-655
               

               Cow position:
               chr1:68250606-68250876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 229
               

               Conread position:
               387-717
               

               Cow position:
               chr1:53251228-53250902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               146, 101
               

               Conread position:
               387-718
               

               Cow position:
               chr1:58197768-58197442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 115
               

               Conread position:
               394-605
               

               Cow position:
               chr1:4276336-4276548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 152
               
UCSC Genome Browser
               Conread position:
               394-718
               

               Cow position:
               chr1:28414527-28414209 (view  custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 14
               
UCSC Genome Browser
               
               
               
Conread position: 395-696

               
               
               
Cow position: chr1:52336060-52335758 (view  custom track)

               
               
               
Alignm length: 306

               
               
               
Alignm identity: 225

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 142, 135
UCSC Genome Browser
               
               
               
Conread position: 395-713

               
               
               
Cow position: chr1:73384162-73384469 (view  custom track)

               
               
               
Alignm length: 320

               
               
               
Alignm identity: 220

               
               
               
Alignm E-value: 1e-37

               
               
               
Alignm gaps (pig, cow): 138, 142

               
               
               Conread position:395-718
               
               
               Cow position:chr1:9263425-9263101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:395-718
               
               
               Cow position:chr1:18025130-18024792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:395-718
               
               
               Cow position:chr1:89090861-89090532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:396-717
               
               
               Cow position:chr1:11199950-11199628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:397-718
               
               
               Cow position:chr1:84446368-84446684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 121

               
               
               Conread position:398-545
               
               
               Cow position:chr1:89125279-89125426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:398-714
               
               
               Cow position:chr1:100451966-100451661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):180, 66

               
               
               Conread position:399-546
               
               
               Cow position:chr1:14112973-14112826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:399-718
               
               
               Cow position:chr1:89111519-89111836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:400-608
               
               
               Cow position:chr1:27678292-27678086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):187, 34

               
               
               Conread position:401-575
               
               
               Cow position:chr1:52222608-52222782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:401-718
               
               
               Cow position:chr1:55779558-55779876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:401-718
               
               
               Cow position:chr1:81301804-81302119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 232

               
               
               Conread position:403-710
               
               
               Cow position:chr1:31253907-31253609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:404-588
               
               
               Cow position:chr1:99016920-99016736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):169, 10

               
               
               Conread position:405-653
               
               
               Cow position:chr1:56438352-56438600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):155, 48

               
               
               Conread position:410-690
               
               
               Cow position:chr1:34317077-34316796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:412-552
               
               
               Cow position:chr1:61674536-61674396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:412-681
               
               
               Cow position:chr1:40899673-40899405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 113

               
               
               Conread position:412-713
               
               
               Cow position:chr1:77109424-77109122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):167, 63

               
               
               Conread position:413-718
               
               
               Cow position:chr1:30078646-30078947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 113

               
               
               Conread position:413-718
               
               
               Cow position:chr1:65389257-65389563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:413-718
               
               
               Cow position:chr1:66490281-66490586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 142

               
               
               Conread position:413-718
               
               
               Cow position:chr1:88178556-88178862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 216

               
               
               Conread position:413-718
               
               
               Cow position:chr1:102432041-102431735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:415-718
               
               
               Cow position:chr1:63045445-63045145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):145, 12

               
               
               Conread position:416-621
               
               
               Cow position:chr1:23056943-23057153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 99

               
               
               Conread position:416-718
               
               
               Cow position:chr1:22222725-22223028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:417-718
               
               
               Cow position:chr1:11666860-11666558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:419-651
               
               
               Cow position:chr1:73403391-73403622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:419-718
               
               
               Cow position:chr1:12802786-12803087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:420-716
               
               
               Cow position:chr1:70311986-70312278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):156, 16

               
               
               Conread position:420-718
               
               
               Cow position:chr1:53371063-53371362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):164, 11

               
               
               Conread position:425-702
               
               
               Cow position:chr1:24580132-24580410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:425-710
               
               
               Cow position:chr1:73553967-73554256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:425-713
               
               
               Cow position:chr1:88389043-88389334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:426-716
               
               
               Cow position:chr1:31596911-31597211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:426-720
               
               
               Cow position:chr1:13405673-13405379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:427-574
               
               
               Cow position:chr1:7838237-7838089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 110

               
               
               Conread position:431-718
               
               
               Cow position:chr1:11324230-11324518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 181

               
               
               Conread position:432-685
               
               
               Cow position:chr1:56129308-56129564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:432-711
               
               
               Cow position:chr1:90291980-90291704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:435-614
               
               
               Cow position:chr1:29041078-29041256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:435-688
               
               
               Cow position:chr1:54164313-54164063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:435-710
               
               
               Cow position:chr1:46802246-46802504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:435-718
               
               
               Cow position:chr1:76850060-76849776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:436-705
               
               
               Cow position:chr1:85530660-85530397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:436-718
               
               
               Cow position:chr1:78922289-78922009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):138, 193

               
               
               Conread position:436-718
               
               
               Cow position:chr1:88532516-88532243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:436-718
               
               
               Cow position:chr1:98617189-98617470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 206

               
               
               Conread position:439-707
               
               
               Cow position:chr1:58217004-58217265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):135, 7

               
               
               Conread position:440-716
               
               
               Cow position:chr1:25552533-25552809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:442-717
               
               
               Cow position:chr1:49605800-49606073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 121

               
               
               Conread position:442-718
               
               
               Cow position:chr1:37677429-37677152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:446-718
               
               
               Cow position:chr1:24654568-24654839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 224

               
               
               Conread position:447-702
               
               
               Cow position:chr1:62142188-62141933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:448-712
               
               
               Cow position:chr1:9513921-9513656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:450-718
               
               
               Cow position:chr1:96194435-96194163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 182

               
               
               Conread position:456-624
               
               
               Cow position:chr1:42875876-42875707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:145
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:456-716
               
               
               Cow position:chr1:99689506-99689766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 146

               
               
               Conread position:457-692
               
               
               Cow position:chr1:61747417-61747179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:458-715
               
               
               Cow position:chr1:20378421-20378668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):117, 45

               
               
               Conread position:458-718
               
               
               Cow position:chr1:20847260-20847009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:461-718
               
               
               Cow position:chr1:34684244-34684502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:464-714
               
               
               Cow position:chr1:17949231-17949482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:464-718
               
               
               Cow position:chr1:34532798-34533053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:464-718
               
               
               Cow position:chr1:79553248-79553499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:465-704
               
               
               Cow position:chr1:3339411-3339651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:468-682
               
               
               Cow position:chr1:102782881-102783096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:471-718
               
               
               Cow position:chr1:18487418-18487173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 70

               
               
               Conread position:472-718
               
               
               Cow position:chr1:16798339-16798090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:473-718
               
               
               Cow position:chr1:6211998-6212245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:473-718
               
               
               Cow position:chr1:91672990-91673236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:475-716
               
               
               Cow position:chr1:32961743-32961498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:477-702
               
               
               Cow position:chr1:52053308-52053532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:485-718
               
               
               Cow position:chr1:86327116-86326884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:486-718
               
               
               Cow position:chr1:31392524-31392289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:489-665
               
               
               Cow position:chr1:89729711-89729534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):44, 49

               
               
               Conread position:489-718
               
               
               Cow position:chr1:14361697-14361467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:491-718
               
               
               Cow position:chr1:85322991-85323220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:492-694
               
               
               Cow position:chr1:100606066-100606260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:496-685
               
               
               Cow position:chr1:28564895-28564710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:497-716
               
               
               Cow position:chr1:8827802-8828023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:497-718
               
               
               Cow position:chr1:26607781-26607561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:499-716
               
               
               Cow position:chr1:9377704-9377487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:500-718
               
               
               Cow position:chr1:29704855-29704642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:502-716
               
               
               Cow position:chr1:21134320-21134105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:502-718
               
               
               Cow position:chr1:20648227-20648444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:502-718
               
               
               Cow position:chr1:22530011-22529798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):71, 201

               
               
               Conread position:505-718
               
               
               Cow position:chr1:56645088-56644877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:507-718
               
               
               Cow position:chr1:20831678-20831886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:508-691
               
               
               Cow position:chr1:21294430-21294247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:508-717
               
               
               Cow position:chr1:79335385-79335175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:514-716
               
               
               Cow position:chr1:21431500-21431300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:514-718
               
               
               Cow position:chr1:72767227-72767019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:518-718
               
               
               Cow position:chr1:23658229-23658430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:518-718
               
               
               Cow position:chr1:52172006-52171805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:518-718
               
               
               Cow position:chr1:83170443-83170644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:520-718
               
               
               Cow position:chr1:63341664-63341468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:521-719
               
               
               Cow position:chr1:16574103-16573903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:524-718
               
               
               Cow position:chr1:48411561-48411757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:530-718
               
               
               Cow position:chr1:52755715-52755528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:536-706
               
               
               Cow position:chr1:95766468-95766299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:536-718
               
               
               Cow position:chr1:17250792-17250975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:536-718
               
               
               Cow position:chr1:73565656-73565474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 133

               
               
               Conread position:540-716
               
               
               Cow position:chr1:17293026-17292849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:540-718
               
               
               Cow position:chr1:18024002-18023823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:542-718
               
               
               Cow position:chr1:19441698-19441521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:542-718
               
               
               Cow position:chr1:51392923-51393097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:544-718
               
               
               Cow position:chr1:11018274-11018448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:544-718
               
               
               Cow position:chr1:52864440-52864269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:546-717
               
               
               Cow position:chr1:56631220-56631392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:548-718
               
               
               Cow position:chr1:22481823-22481656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:553-713
               
               
               Cow position:chr1:32071869-32072030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:553-718
               
               
               Cow position:chr1:60251588-60251422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:553-718
               
               
               Cow position:chr1:67001048-67001214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:554-718
               
               
               Cow position:chr1:71677216-71677051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:555-718
               
               
               Cow position:chr1:26142368-26142204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:564-718
               
               
               Cow position:chr1:99016172-99016020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:566-718
               
               
               Cow position:chr1:42888639-42888486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:578-718
               
               
               Cow position:chr1:68819037-68818898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:586-718
               
               
               Cow position:chr1:87148759-87148627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	1-110
Cow position:	chr1:17189359-17189250 (view UCSC Genome Browser custom track)
Alignm length:	110
Alignm identity:	87
Alignm E-value:	7e-21
Alignm gaps (pig, cow):	0, 0
Conread position:	1-159
Cow position:	chr1:21306617-21306779 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	121
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	109, 0
Conread position:	1-165
Cow position:	chr1:33549402-33549237 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	121
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	132, 108
Conread position:	1-191
Cow position:	chr1:92554808-92554623 (view UCSC Genome Browser custom track)
Alignm length:	193
Alignm identity:	142
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	103, 46
Conread position:	1-195
Cow position:	chr1:4210396-4210594 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	149
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	109, 0
Conread position:	1-197
Cow position:	chr1:47161119-47160920 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	139
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	101, 0
Conread position:	1-198
Cow position:	chr1:92281319-92281127 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	151
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	69, 33
Conread position:	1-204
Cow position:	chr1:56165810-56166013 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	142
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	137, 200
Conread position:	1-205
Cow position:	chr1:16117218-16117429 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	150
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	112, 206
Conread position:	1-212
Cow position:	chr1:42890767-42890558 (view UCSC Genome Browser custom track)
Alignm length:	216
Alignm identity:	155
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	109, 169
Conread position:	1-225
Cow position:	chr1:65570821-65570593 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	171
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	109, 203
Conread position:	1-227
Cow position:	chr1:73019665-73019434 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	162
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	114, 57
Conread position:	1-233
Cow position:	chr1:18280984-18281229 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	169
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	109, 0
Conread position:	1-264
Cow position:	chr1:69768859-69769134 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	190
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	105, 147
Conread position:	1-287
Cow position:	chr1:28279898-28280188 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	188
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	105, 204
Conread position:	1-288
Cow position:	chr1:65611595-65611876 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	196
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	109, 47
Conread position:	1-289
Cow position:	chr1:46175909-46175619 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	185
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	107, 249
Conread position:	1-290
Cow position:	chr1:67910837-67911133 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	200
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	51, 181
Conread position:	1-294
Cow position:	chr1:19184024-19183730 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	202
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	128, 111
Conread position:	1-297
Cow position:	chr1:67003439-67003736 (view UCSC Genome Browser custom track)
Alignm length:	301
Alignm identity:	206
Alignm E-value:	5e-38
Alignm gaps (pig, cow):	109, 173