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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8027O04.5
        

               
Conread position:
               
1-162
               

               
Cow position:
               
chr24:17312404-17312250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr24:36132478-36132644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr24:17454814-17454646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr24:4413233-4413035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
166, 111
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr24:36037895-36037633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
134, 111
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr24:22973388-22973653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 133
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr24:11150805-11150494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr24:14880569-14880262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr24:19835724-19836038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
109, 207
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr24:19704018-19704395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 355
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr24:11691680-11691301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr24:14722764-14723171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 103
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr24:3849884-3850348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 203
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr24:34601653-34602121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr24:38004625-38004138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 183
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr24:12148783-12148288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr24:2711745-2712236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
101, 157
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr24:24801696-24801193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr24:12204045-12203557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
100, 89
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr24:20285027-20284510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 207
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr24:22818162-22818686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 86
               

               
Conread position:
               
1-527
               

               
Cow position:
               
chr24:16326223-16325724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
227, 162
               

               
Conread position:
               
1-528
               

               
Cow position:
               
chr24:41230931-41231448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 147
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr24:6069542-6068994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 207
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr24:14317221-14316673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr24:42583451-42582876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 312
               

               
Conread position:
               
1-583
               

               
Cow position:
               
chr24:14306538-14307148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
103, 245
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr24:16907662-16908243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 71
               

               
Conread position:
               
1-651
               

               
Cow position:
               
chr24:16098832-16099500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
1-674
               

               
Cow position:
               
chr24:36724381-36725047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 179
               

               
Conread position:
               
1-703
               

               
Cow position:
               
chr24:14377339-14376611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 136
               

               
Conread position:
               
1-704
               

               
Cow position:
               
chr24:16857213-16857920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
87, 115
               

               
Conread position:
               
1-706
               

               
Cow position:
               
chr24:14174415-14173730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 148
               

               
Conread position:
               
1-707
               

               
Cow position:
               
chr24:14335187-14335885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 100
               

               
Conread position:
               
1-714
               

               
Cow position:
               
chr24:7063883-7064605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
1-714
               

               
Cow position:
               
chr24:13086163-13085440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
1-716
               

               
Cow position:
               
chr24:16559987-16559238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
1-717
               

               
Cow position:
               
chr24:29189603-29190331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 203
               

               
Conread position:
               
1-717
               

               
Cow position:
               
chr24:41004807-41005521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 119
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6021759-6021035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6078757-6079469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6327049-6326328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6411796-6412521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6440069-6440796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:6463297-6464007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:8606663-8607372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 170
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:9089742-9089041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:12698701-12697973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:13234556-13235275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:14195542-14194805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 133
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:16082171-16081443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:16473294-16473987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 66
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:17323009-17323740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:17957246-17956561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 52
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:18268167-18267448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:19184483-19185198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 198
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:19884610-19885334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:20366682-20367410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:21248631-21247903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:28687783-28688483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 177
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:37198708-37197986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr24:40550943-40551668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 134
               

               
Conread position:
               
1-720
               

               
Cow position:
               
chr24:35868317-35867627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 37
               

               
Conread position:
               
2-110
               

               
Cow position:
               
chr24:14869997-14869889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr24:12126774-12126258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
2-706
               

               
Cow position:
               
chr24:12333404-12332675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 206
               

               
Conread position:
               
2-716
               

               
Cow position:
               
chr24:8755239-8755928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
226, 42
               

               
Conread position:
               
2-718
               

               
Cow position:
               
chr24:19689260-19688536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 110
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr24:12267154-12267310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr24:1454100-1454357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr24:6657934-6657569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 149
               

               
Conread position:
               
3-446
               

               
Cow position:
               
chr24:33936239-33936672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
327, 107
               

               
Conread position:
               
3-550
               

               
Cow position:
               
chr24:19642243-19642782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 109
               

               
Conread position:
               
3-651
               

               
Cow position:
               
chr24:42587332-42587973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
3-705
               

               
Cow position:
               
chr24:17299601-17298927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
3-707
               

               
Cow position:
               
chr24:12088522-12089231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 109
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr24:208682-207961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr24:6667452-6666739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr24:13190490-13191211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 201
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr24:14759202-14759937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr24:40468086-40467373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 109
               

               
Conread position:
               
4-716
               

               
Cow position:
               
chr24:17410776-17411450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 47
               

               
Conread position:
               
5-524
               

               
Cow position:
               
chr24:29154691-29155209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 104
               

               
Conread position:
               
6-328
               

               
Cow position:
               
chr24:22322040-22322365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 212
               

               
Conread position:
               
6-544
               

               
Cow position:
               
chr24:29350979-29350458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr24:31085423-31085774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr24:6678369-6678583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 139
               

               
Conread position:
               
9-494
               

               
Cow position:
               
chr24:6164778-6164304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
296, 6
               

               
Conread position:
               
9-715
               

               
Cow position:
               
chr24:12239197-12239897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 103
               

               
Conread position:
               
9-718
               

               
Cow position:
               
chr24:36557240-36556535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 14
               

               
Conread position:
               
15-382
               

               
Cow position:
               
chr24:14350330-14350707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
15-703
               

               
Cow position:
               
chr24:39679865-39680535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 93
               

               
Conread position:
               
15-718
               

               
Cow position:
               
chr24:9177634-9176944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 109
               

               
Conread position:
               
22-475
               

               
Cow position:
               
chr24:31183573-31184029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
22-604
               

               
Cow position:
               
chr24:38640481-38641073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 105
               

               
Conread position:
               
22-718
               

               
Cow position:
               
chr24:13300510-13299815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
23-304
               

               
Cow position:
               
chr24:13177844-13177558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
23-716
               

               
Cow position:
               
chr24:19468248-19467548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 178
               

               
Conread position:
               
23-718
               

               
Cow position:
               
chr24:16208675-16207980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr24:37749693-37749106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 114
               

               
Conread position:
               
31-571
               

               
Cow position:
               
chr24:14263926-14264486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
32-705
               

               
Cow position:
               
chr24:12910939-12911595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
35-305
               

               
Cow position:
               
chr24:38584792-38584519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
39-715
               

               
Cow position:
               
chr24:12570259-12570952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 174
               

               
Conread position:
               
43-198
               

               
Cow position:
               
chr24:44964127-44963973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
128, 69
               

               
Conread position:
               
43-310
               

               
Cow position:
               
chr24:6338731-6338998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
55-717
               

               
Cow position:
               
chr24:13323221-13323886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 64
               

               
Conread position:
               
58-470
               

               
Cow position:
               
chr24:32362742-32362324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
58-716
               

               
Cow position:
               
chr24:23093670-23093007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 146
               

               
Conread position:
               
58-716
               

               
Cow position:
               
chr24:23096408-23095745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 146
               

               
Conread position:
               
58-718
               

               
Cow position:
               
chr24:146220-145560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
66-404
               

               
Cow position:
               
chr24:19674092-19674424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
72-718
               

               
Cow position:
               
chr24:12208178-12208824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 16
               

               
Conread position:
               
77-622
               

               
Cow position:
               
chr24:6509682-6509145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
83-651
               

               
Cow position:
               
chr24:41535716-41535162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
88-718
               

               
Cow position:
               
chr24:31380830-31381443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
89-720
               

               
Cow position:
               
chr24:16647495-16646863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
91-544
               

               
Cow position:
               
chr24:25009868-25009414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
96-605
               

               
Cow position:
               
chr24:17997716-17998209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
100-563
               

               
Cow position:
               
chr24:11570733-11570291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
103-574
               

               
Cow position:
               
chr24:15934332-15934799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
105-647
               

               
Cow position:
               
chr24:27586205-27586741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
105-718
               

               
Cow position:
               
chr24:6963273-6963893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 290
               

               
Conread position:
               
119-658
               

               
Cow position:
               
chr24:14869650-14869107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
133-673
               

               
Cow position:
               
chr24:25371387-25371934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
154-614
               

               
Cow position:
               
chr24:12466715-12467188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
154-705
               

               
Cow position:
               
chr24:14716366-14715832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
154-705
               

               
Cow position:
               
chr24:40460912-40460365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
166-715
               

               
Cow position:
               
chr24:14381803-14381249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
170-712
               

               
Cow position:
               
chr24:12941826-12942368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
172-718
               

               
Cow position:
               
chr24:36712742-36713276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
173-647
               

               
Cow position:
               
chr24:32848658-32849124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
173-661
               

               
Cow position:
               
chr24:16604286-16603798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 193
               

               
Conread position:
               
173-682
               

               
Cow position:
               
chr24:30895320-30895828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
178-507
               

               
Cow position:
               
chr24:14276201-14275871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
178-706
               

               
Cow position:
               
chr24:14610348-14609814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
180-574
               

               
Cow position:
               
chr24:15295325-15295723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
188-718
               

               
Cow position:
               
chr24:40150870-40150349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
193-546
               

               
Cow position:
               
chr24:33985986-33986345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
220-509
               

               
Cow position:
               
chr24:24073463-24073178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
220-719
               

               
Cow position:
               
chr24:26794422-26793928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
221-717
               

               
Cow position:
               
chr24:12578073-12578563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
227-718
               

               
Cow position:
               
chr24:37077305-37076836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
232-567
               

               
Cow position:
               
chr24:17310987-17310655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
235-636
               

               
Cow position:
               
chr24:43906008-43906414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
235-718
               

               
Cow position:
               
chr24:34373146-34373635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
238-645
               

               
Cow position:
               
chr24:11226858-11227259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
242-716
               

               
Cow position:
               
chr24:44942082-44942542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 115
               

               
Conread position:
               
243-660
               

               
Cow position:
               
chr24:15707240-15706811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
15, 115
               

               
Conread position:
               
244-665
               

               
Cow position:
               
chr24:23821250-23820836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
63, 114
               

               
Conread position:
               
253-614
               

               
Cow position:
               
chr24:6414440-6414803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
272-714
               

               
Cow position:
               
chr24:1295667-1295218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 80
               

               
Conread position:
               
278-718
               

               
Cow position:
               
chr24:41199342-41199776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
146, 5
               

               
Conread position:
               
280-718
               

               
Cow position:
               
chr24:24249890-24249458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
285-511
               

               
Cow position:
               
chr24:17369563-17369335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
299-688
               

               
Cow position:
               
chr24:12266998-12266618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
307-718
               

               
Cow position:
               
chr24:1454338-1454739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
308-633
               

               
Cow position:
               
chr24:33574842-33575163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
324-718
               

               
Cow position:
               
chr24:8827844-8828225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
326-494
               

               
Cow position:
               
chr24:29075183-29075017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
337-716
               

               
Cow position:
               
chr24:25648397-25648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 12
               

               
Conread position:
               
337-718
               

               
Cow position:
               
chr24:3162131-3162513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 18
               

               
Conread position:
               
341-718
               

               
Cow position:
               
chr24:6539126-6539502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 161
               

               
Conread position:
               
341-718
               

               
Cow position:
               
chr24:36721115-36721488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
344-718
               

               
Cow position:
               
chr24:3850263-3850638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 240
               

               
Conread position:
               
344-718
               

               
Cow position:
               
chr24:17031305-17030952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
233, 76
               

               
Conread position:
               
345-717
               

               
Cow position:
               
chr24:22322732-22323105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
355-718
               

               
Cow position:
               
chr24:12120274-12119909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 241
               

               
Conread position:
               
357-717
               

               
Cow position:
               
chr24:42815030-42815393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
357-718
               

               
Cow position:
               
chr24:36037148-36036782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
361-571
               

               
Cow position:
               
chr24:27368849-27368646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
371-718
               

               
Cow position:
               
chr24:38487102-38487449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 17
               

               
Conread position:
               
379-717
               

               
Cow position:
               
chr24:13177252-13176916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
379-718
               

               
Cow position:
               
chr24:29084962-29084622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
390-715
               

               
Cow position:
               
chr24:36778988-36779311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 110
               

               
Conread position:
               
394-716
               

               
Cow position:
               
chr24:32824365-32824048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 13
               

               
Conread position:
               
395-593
               

               
Cow position:
               
chr24:12164348-12164546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
395-717
               

               
Cow position:
               
chr24:6543298-6543619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
179, 151
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr24:9548986-9549309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 218
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr24:14352070-14352395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr24:35824482-35824158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
396-718
               

               
Cow position:
               
chr24:40121372-40121048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 125
               

               
Conread position:
               
398-596
               

               
Cow position:
               
chr24:14744924-14745122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
135, 139
               

               
Conread position:
               
398-707
               

               
Cow position:
               
chr24:27762291-27762600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 36
               

               
Conread position:
               
398-711
               

               
Cow position:
               
chr24:19674562-19674862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
398-716
               

               
Cow position:
               
chr24:9072115-9071800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 69
               

               
Conread position:
               
403-718
               

               
Cow position:
               
chr24:34318687-34319001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
412-717
               

               
Cow position:
               
chr24:27147851-27148152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
413-596
               

               
Cow position:
               
chr24:17544896-17545075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
413-718
               

               
Cow position:
               
chr24:22974546-22974850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
414-512
               

               
Cow position:
               
chr24:29181091-29181189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
422-718
               

               
Cow position:
               
chr24:30767315-30767614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
426-718
               

               
Cow position:
               
chr24:9545922-9546215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 200
               

               
Conread position:
               
435-718
               

               
Cow position:
               
chr24:36028750-36028471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
442-718
               

               
Cow position:
               
chr24:33936695-33936972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 187
               

               
Conread position:
               
446-714
               

               
Cow position:
               
chr24:14915043-14914780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
452-716
               

               
Cow position:
               
chr24:6523756-6524012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
458-718
               

               
Cow position:
               
chr24:17764818-17764556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 175
               

               
Conread position:
               
461-718
               

               
Cow position:
               
chr24:32362060-32361808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
113, 172
               

               
Conread position:
               
464-718
               

               
Cow position:
               
chr24:31842328-31842583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
480-718
               

               
Cow position:
               
chr24:6036437-6036198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
481-716
               

               
Cow position:
               
chr24:38003225-38002998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
484-718
               

               
Cow position:
               
chr24:16562610-16562372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 236
               

               
Conread position:
               
489-713
               

               
Cow position:
               
chr24:43633931-43634156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
490-718
               

               
Cow position:
               
chr24:29181192-29181421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
497-717
               

               
Cow position:
               
chr24:12147769-12147548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
497-718
               

               
Cow position:
               
chr24:38813430-38813652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
502-718
               

               
Cow position:
               
chr24:17369112-17368894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 141
               

               
Conread position:
               
503-707
               

               
Cow position:
               
chr24:22820537-22820742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 165
               

               
Conread position:
               
506-718
               

               
Cow position:
               
chr24:31068211-31068002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
509-710
               

               
Cow position:
               
chr24:29178822-29179019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
512-718
               

               
Cow position:
               
chr24:39501759-39501552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
64, 158
               

               
Conread position:
               
514-718
               

               
Cow position:
               
chr24:6339413-6339616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
62, 119
               

               
Conread position:
               
515-718
               

               
Cow position:
               
chr24:17405966-17406169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 187
               

               
Conread position:
               
518-718
               

               
Cow position:
               
chr24:6068496-6068296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
542-703
               

               
Cow position:
               
chr24:37099683-37099846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
553-717
               

               
Cow position:
               
chr24:25439105-25439266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
554-717
               

               
Cow position:
               
chr24:6534421-6534257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
584-718
               

               
Cow position:
               
chr24:20284298-20284164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.