Cow genome map

Conread name: Ss1.1-Pig4-TMW8027O04.5

Conread position: 1-110
Cow position: chr6:2446180-2446289 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-110
Cow position: chr6:55785842-55785951 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-142
Cow position: chr6:32633021-32633166 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 1-157
Cow position: chr6:46479330-46479490 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 0

Conread position: 1-160
Cow position: chr6:34029440-34029602 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 109, 129

Conread position: 1-165
Cow position: chr6:67212694-67212534 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 1-166
Cow position: chr6:7192479-7192314 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 78

Conread position: 1-189
Cow position: chr6:28138961-28139150 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 8

Conread position: 1-190
Cow position: chr6:13757924-13758117 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 150
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 109, 0

Conread position: 1-193
Cow position: chr6:40000284-40000092 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 105, 132

Conread position: 1-198
Cow position: chr6:15895592-15895394 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 127

Conread position: 1-204
Cow position: chr6:32677759-32677554 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 109, 194

Conread position: 1-204
Cow position: chr6:41229646-41229849 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 111

Conread position: 1-236
Cow position: chr6:21974864-21975100 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 128, 111

Conread position: 1-256
Cow position: chr6:31010586-31010323 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 25

Conread position: 1-264
Cow position: chr6:40552376-40552113 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 132

Conread position: 1-300
Cow position: chr6:33809838-33810142 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 203

Conread position: 1-305
Cow position: chr6:31587062-31586753 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 203

Conread position: 1-310
Cow position: chr6:1820422-1820114 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 131, 97

Conread position: 1-310
Cow position: chr6:34505843-34505532 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 109, 133

Conread position: 1-310
Cow position: chr6:61052896-61052582 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 203

Conread position: 1-314
Cow position: chr6:1408448-1408130 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 109, 80

Conread position: 1-314
Cow position: chr6:67552683-67553002 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 203

Conread position: 1-320
Cow position: chr6:32002078-32001758 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 99, 134

Conread position: 1-325
Cow position: chr6:1107027-1106704 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 112, 68

Conread position: 1-344
Cow position: chr6:44148352-44148005 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 109, 207

Conread position: 1-372
Cow position: chr6:43777462-43777833 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 98, 131

Conread position: 1-372
Cow position: chr6:52695227-52695599 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 71

Conread position: 1-382
Cow position: chr6:704415-704807 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 360

Conread position: 1-382
Cow position: chr6:45936466-45936851 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 111

Conread position: 1-395
Cow position: chr6:24625403-24624999 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 274
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 77, 284

Conread position: 1-395
Cow position: chr6:58603685-58604073 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 109, 129

Conread position: 1-405
Cow position: chr6:6094437-6094846 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 155

Conread position: 1-405
Cow position: chr6:45902687-45902275 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 203

Conread position: 1-406
Cow position: chr6:37478424-37478836 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 103, 204

Conread position: 1-425
Cow position: chr6:53544299-53544732 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 203

Conread position: 1-429
Cow position: chr6:2556846-2557287 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 396

Conread position: 1-429
Cow position: chr6:51091562-51092007 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 207

Conread position: 1-442
Cow position: chr6:26776972-26776536 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 303
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 109, 183

Conread position: 1-446
Cow position: chr6:16982597-16982142 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 203

Conread position: 1-525
Cow position: chr6:14143287-14142755 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 52

Conread position: 1-525
Cow position: chr6:20557744-20557215 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 143

Conread position: 1-527
Cow position: chr6:5750133-5750666 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 134

Conread position: 1-556
Cow position: chr6:25216504-25217062 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 138

Conread position: 1-596
Cow position: chr6:38273781-38274375 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 111

Conread position: 1-604
Cow position: chr6:28702497-28701900 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 15

Conread position: 1-609
Cow position: chr6:18513756-18514354 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 134

Conread position: 1-624
Cow position: chr6:29281505-29282116 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 199

Conread position: 1-636
Cow position: chr6:28186635-28185990 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-636
Cow position: chr6:34057617-34057017 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 391
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 532, 95

Conread position: 1-639
Cow position: chr6:38612333-38611699 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 23

Conread position: 1-641
Cow position: chr6:13978962-13979612 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 81

Conread position: 1-659
Cow position: chr6:58879064-58879709 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 25

Conread position: 1-688
Cow position: chr6:46296473-46297169 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 148

Conread position: 1-690
Cow position: chr6:6186444-6187127 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 206

Conread position: 1-694
Cow position: chr6:28135136-28135836 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 134

Conread position: 1-698
Cow position: chr6:40317784-40318496 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 119

Conread position: 1-703
Cow position: chr6:18913276-18912563 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-703
Cow position: chr6:28109072-28108378 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 41

Conread position: 1-710
Cow position: chr6:38989589-38988893 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 1-714
Cow position: chr6:27527788-27527065 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 21

Conread position: 1-716
Cow position: chr6:329157-328436 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 135

Conread position: 1-716
Cow position: chr6:477745-478474 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 111

Conread position: 1-716
Cow position: chr6:11722995-11722271 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 21

Conread position: 1-716
Cow position: chr6:14133544-14132819 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-716
Cow position: chr6:40277273-40277983 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 203

Conread position: 1-717
Cow position: chr6:49372-48647 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 87

Conread position: 1-717
Cow position: chr6:41676139-41676859 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 57

Conread position: 1-717
Cow position: chr6:42265939-42266664 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 88

Conread position: 1-718
Cow position: chr6:183339-182614 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 133

Conread position: 1-718
Cow position: chr6:237650-236949 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 115

Conread position: 1-718
Cow position: chr6:916243-916969 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:1535901-1536631 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 343

Conread position: 1-718
Cow position: chr6:1796465-1795742 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:2376908-2377630 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 98

Conread position: 1-718
Cow position: chr6:2580630-2581339 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 40

Conread position: 1-718
Cow position: chr6:3151434-3152144 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 55

Conread position: 1-718
Cow position: chr6:3486196-3485472 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:3887309-3886580 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 179

Conread position: 1-718
Cow position: chr6:5947581-5946850 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 206

Conread position: 1-718
Cow position: chr6:6162326-6163056 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 127

Conread position: 1-718
Cow position: chr6:8204380-8205118 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 111

Conread position: 1-718
Cow position: chr6:8537102-8536369 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:9757429-9756690 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 109

Conread position: 1-718
Cow position: chr6:10043417-10044141 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 205

Conread position: 1-718
Cow position: chr6:10611041-10611754 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 152

Conread position: 1-718
Cow position: chr6:11018860-11019583 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 202

Conread position: 1-718
Cow position: chr6:11870729-11870008 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:12628129-12628828 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 28

Conread position: 1-718
Cow position: chr6:12664115-12663389 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:13309183-13308459 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:13849276-13849998 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:14927662-14928385 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 111

Conread position: 1-718
Cow position: chr6:15138967-15138240 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 23

Conread position: 1-718
Cow position: chr6:15925361-15924663 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 170

Conread position: 1-718
Cow position: chr6:16051090-16050364 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:16592174-16592891 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 111

Conread position: 1-718
Cow position: chr6:16767637-16766914 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 157

Conread position: 1-718
Cow position: chr6:17596087-17595359 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:18986229-18986945 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 108

Conread position: 1-718
Cow position: chr6:19104709-19103982 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 111

Conread position: 1-718
Cow position: chr6:20351891-20351163 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:21833439-21832733 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 51

Conread position: 1-718
Cow position: chr6:25791494-25790773 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 52

Conread position: 1-718
Cow position: chr6:27152242-27151515 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 1-718
Cow position: chr6:27474621-27475338 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 21

Conread position: 1-718
Cow position: chr6:28103657-28102939 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 111

Conread position: 1-718
Cow position: chr6:28171109-28171830 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 1-718
Cow position: chr6:28489367-28488642 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:32417710-32418437 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 158

Conread position: 1-718
Cow position: chr6:33465173-33465886 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 25

Conread position: 1-718
Cow position: chr6:35874510-35873788 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 157

Conread position: 1-718
Cow position: chr6:36530489-36531207 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 133

Conread position: 1-718
Cow position: chr6:37386783-37387504 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 111

Conread position: 1-718
Cow position: chr6:39435720-39434990 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 47

Conread position: 1-718
Cow position: chr6:39911526-39912251 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 207

Conread position: 1-718
Cow position: chr6:40864827-40864106 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 111

Conread position: 1-718
Cow position: chr6:40974386-40975112 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:43619937-43620657 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 54

Conread position: 1-718
Cow position: chr6:44018627-44017902 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 201

Conread position: 1-718
Cow position: chr6:47040987-47040283 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 207

Conread position: 1-718
Cow position: chr6:50486596-50485847 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 207

Conread position: 1-718
Cow position: chr6:51716745-51717482 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 38

Conread position: 1-718
Cow position: chr6:51732283-51733008 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 134

Conread position: 1-718
Cow position: chr6:55237893-55238622 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 203

Conread position: 1-718
Cow position: chr6:59618285-59618995 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 116

Conread position: 1-718
Cow position: chr6:62577983-62577256 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 1-718
Cow position: chr6:64718522-64719244 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 14

Conread position: 1-718
Cow position: chr6:68029378-68030105 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 134

Conread position: 2-381
Cow position: chr6:30272689-30272299 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 13, 177

Conread position: 2-382
Cow position: chr6:34492356-34492744 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 266
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 108, 206

Conread position: 2-486
Cow position: chr6:65896749-65896256 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 315
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 149

Conread position: 2-558
Cow position: chr6:66838315-66838876 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 215

Conread position: 2-714
Cow position: chr6:50112309-50112996 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 2-715
Cow position: chr6:7161018-7161706 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 460
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 86, 90

Conread position: 2-718
Cow position: chr6:1275793-1275063 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 459

Conread position: 2-718
Cow position: chr6:7139132-7138414 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 3-164
Cow position: chr6:18465714-18465554 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 21

Conread position: 3-211
Cow position: chr6:65906588-65906374 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 207

Conread position: 3-245
Cow position: chr6:19018312-19018553 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 201, 106

Conread position: 3-262
Cow position: chr6:57472016-57472273 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 98, 201

Conread position: 3-310
Cow position: chr6:17048511-17048821 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 110

Conread position: 3-381
Cow position: chr6:3685095-3685482 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 129, 109

Conread position: 3-451
Cow position: chr6:2542052-2542517 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 130

Conread position: 3-575
Cow position: chr6:29479191-29479779 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 95

Conread position: 3-714
Cow position: chr6:15479814-15480502 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 151

Conread position: 3-715
Cow position: chr6:38874455-38873738 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 109

Conread position: 3-717
Cow position: chr6:58952897-58952196 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 156

Conread position: 3-718
Cow position: chr6:24241493-24242217 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 12

Conread position: 3-718
Cow position: chr6:40159295-40158588 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 112

Conread position: 3-718
Cow position: chr6:43791378-43790652 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 363

Conread position: 4-263
Cow position: chr6:3756941-3757201 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 129, 24

Conread position: 4-636
Cow position: chr6:34274591-34273961 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 11

Conread position: 4-718
Cow position: chr6:7941572-7940864 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 24

Conread position: 4-718
Cow position: chr6:18751981-18751264 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 434
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 179, 108

Conread position: 4-718
Cow position: chr6:39332324-39331605 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 108

Conread position: 4-718
Cow position: chr6:65929444-65930171 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 419

Conread position: 5-341
Cow position: chr6:22931714-22931386 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 41

Conread position: 5-608
Cow position: chr6:65849704-65849107 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 59

Conread position: 9-213
Cow position: chr6:4509783-4509990 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 101, 64

Conread position: 9-324
Cow position: chr6:66234011-66234323 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 49

Conread position: 9-455
Cow position: chr6:3263486-3263038 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 276
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 13

Conread position: 9-661
Cow position: chr6:66746573-66747242 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 214

Conread position: 9-690
Cow position: chr6:50623523-50624187 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 438
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 47, 134

Conread position: 9-718
Cow position: chr6:34128670-34129384 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 6

Conread position: 9-718
Cow position: chr6:50570414-50571114 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 126

Conread position: 9-718
Cow position: chr6:62663990-62664701 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 6

Conread position: 9-718
Cow position: chr6:67266464-67267193 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 214

Conread position: 13-718
Cow position: chr6:55540058-55539344 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 9

Conread position: 14-717
Cow position: chr6:6439023-6439735 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 454
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 101

Conread position: 16-409
Cow position: chr6:6184748-6184354 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 266
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 96, 191

Conread position: 17-717
Cow position: chr6:51149157-51149867 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 5

Conread position: 22-251
Cow position: chr6:43574716-43574942 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 88, 134

Conread position: 22-718
Cow position: chr6:17888709-17888014 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 433
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 75, 157

Conread position: 23-716
Cow position: chr6:65936435-65935728 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 278

Conread position: 23-718
Cow position: chr6:59595479-59596188 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 112

Conread position: 25-458
Cow position: chr6:25361520-25361956 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 9, 34

Conread position: 25-525
Cow position: chr6:1381118-1380642 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 300
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 294, 21

Conread position: 25-665
Cow position: chr6:16624062-16624685 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 79

Conread position: 25-718
Cow position: chr6:63705417-63704720 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 33

Conread position: 26-297
Cow position: chr6:32509649-32509380 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 202, 127

Conread position: 26-718
Cow position: chr6:66547685-66548400 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 32

Conread position: 28-624
Cow position: chr6:10645915-10646524 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 29-372
Cow position: chr6:43185247-43185594 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 109, 43

Conread position: 29-718
Cow position: chr6:6158897-6159584 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 67

Conread position: 30-325
Cow position: chr6:53971064-53971357 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 108, 82

Conread position: 30-718
Cow position: chr6:66189540-66188874 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 17

Conread position: 34-665
Cow position: chr6:11164287-11163668 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 24

Conread position: 36-590
Cow position: chr6:8636721-8636180 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 68

Conread position: 38-646
Cow position: chr6:9265088-9264485 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 165

Conread position: 40-715
Cow position: chr6:35824120-35824765 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 18

Conread position: 54-714
Cow position: chr6:28064249-28064913 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 179

Conread position: 54-718
Cow position: chr6:60378414-60379089 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 157

Conread position: 58-651
Cow position: chr6:16521667-16521069 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 385
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 55

Conread position: 58-718
Cow position: chr6:60168292-60167627 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 120

Conread position: 61-718
Cow position: chr6:1508241-1507584 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 63-546
Cow position: chr6:39349653-39350146 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 141

Conread position: 72-605
Cow position: chr6:3573055-3573583 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 65

Conread position: 76-574
Cow position: chr6:15278279-15277767 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 128

Conread position: 76-717
Cow position: chr6:33950887-33950227 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 132

Conread position: 77-559
Cow position: chr6:1097572-1097097 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 35

Conread position: 82-716
Cow position: chr6:50720395-50721022 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 85-451
Cow position: chr6:39360014-39359667 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 250
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 252, 24

Conread position: 87-718
Cow position: chr6:28400960-28400325 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 117

Conread position: 89-693
Cow position: chr6:617452-618057 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 118

Conread position: 89-702
Cow position: chr6:18496610-18497229 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 226

Conread position: 92-717
Cow position: chr6:17811034-17810411 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 388
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 89, 20

Conread position: 100-716
Cow position: chr6:28550768-28550137 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 95

Conread position: 101-483
Cow position: chr6:35417607-35417230 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 127, 14

Conread position: 102-706
Cow position: chr6:43331080-43330504 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 36

Conread position: 106-718
Cow position: chr6:25375784-25375168 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 94

Conread position: 112-446
Cow position: chr6:14502141-14502483 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 224
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 91

Conread position: 114-565
Cow position: chr6:31950999-31951446 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 293
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 118

Conread position: 123-718
Cow position: chr6:41390128-41389520 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 125-718
Cow position: chr6:65820256-65819654 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 75

Conread position: 130-717
Cow position: chr6:27340951-27341526 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 382
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 18

Conread position: 130-718
Cow position: chr6:39956405-39956988 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 133-562
Cow position: chr6:55901581-55902014 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 59

Conread position: 133-718
Cow position: chr6:1054072-1053509 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 37

Conread position: 133-718
Cow position: chr6:28185990-28185404 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 0

Conread position: 134-546
Cow position: chr6:69144736-69145146 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 59

Conread position: 137-718
Cow position: chr6:51895724-51895160 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 63

Conread position: 138-446
Cow position: chr6:25803654-25803340 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 205
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 69, 62

Conread position: 139-700
Cow position: chr6:50636634-50637198 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 61

Conread position: 139-716
Cow position: chr6:7759866-7759319 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 362
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 66, 115

Conread position: 140-717
Cow position: chr6:45590891-45591473 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 11

Conread position: 140-718
Cow position: chr6:61160536-61161143 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 396
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 55, 215

Conread position: 141-718
Cow position: chr6:35723754-35724321 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 371
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 167

Conread position: 143-669
Cow position: chr6:31813653-31813120 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 146-687
Cow position: chr6:66561877-66562422 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 54

Conread position: 147-718
Cow position: chr6:6165020-6165569 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 21

Conread position: 154-718
Cow position: chr6:28002026-28001450 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 46

Conread position: 172-658
Cow position: chr6:34237643-34237149 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 172-718
Cow position: chr6:8756444-8755891 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 29

Conread position: 173-718
Cow position: chr6:3273102-3272554 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 111

Conread position: 173-718
Cow position: chr6:9840762-9840204 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 223

Conread position: 173-718
Cow position: chr6:10235586-10236124 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 173-718
Cow position: chr6:12971544-12970991 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 173-718
Cow position: chr6:53936252-53935706 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 308

Conread position: 174-714
Cow position: chr6:6720371-6720907 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 174-716
Cow position: chr6:43798520-43797988 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 88

Conread position: 178-716
Cow position: chr6:28845759-28845211 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 376
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 98

Conread position: 180-702
Cow position: chr6:34029661-34030162 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 167

Conread position: 180-718
Cow position: chr6:2876646-2876105 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 11

Conread position: 189-621
Cow position: chr6:26326036-26325598 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 211-693
Cow position: chr6:7192140-7191649 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 337

Conread position: 220-650
Cow position: chr6:17353895-17353453 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 289
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 28, 212

Conread position: 220-665
Cow position: chr6:10678244-10678694 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 302
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 214

Conread position: 222-718
Cow position: chr6:22738274-22737781 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 173

Conread position: 223-718
Cow position: chr6:40000032-39999531 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 133

Conread position: 224-638
Cow position: chr6:19329508-19329096 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 26

Conread position: 224-716
Cow position: chr6:41230925-41231411 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 47

Conread position: 224-718
Cow position: chr6:60875724-60876225 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 227-584
Cow position: chr6:62488060-62487698 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 279

Conread position: 227-718
Cow position: chr6:37385584-37386077 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 42

Conread position: 227-718
Cow position: chr6:62852036-62852509 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 318
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 74, 11

Conread position: 231-718
Cow position: chr6:21975385-21975878 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 104

Conread position: 232-509
Cow position: chr6:18572588-18572307 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 172

Conread position: 232-718
Cow position: chr6:12513958-12514443 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 48

Conread position: 243-644
Cow position: chr6:15179658-15180055 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 275
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 63, 24

Conread position: 243-718
Cow position: chr6:51867445-51867921 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 73

Conread position: 244-571
Cow position: chr6:33896877-33896555 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 92, 0

Conread position: 244-574
Cow position: chr6:41414865-41414529 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 96, 299

Conread position: 244-658
Cow position: chr6:16595458-16595866 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 269
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 132, 71

Conread position: 244-716
Cow position: chr6:14264278-14264767 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 154

Conread position: 247-718
Cow position: chr6:22931405-22930960 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 316
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 72, 224

Conread position: 250-716
Cow position: chr6:48875879-48875407 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 105

Conread position: 250-718
Cow position: chr6:67212320-67211854 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 46

Conread position: 253-614
Cow position: chr6:58390879-58390517 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 64

Conread position: 256-718
Cow position: chr6:225447-224987 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 141

Conread position: 258-651
Cow position: chr6:13367543-13367938 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 59

Conread position: 266-651
Cow position: chr6:53810097-53810471 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 132, 0

Conread position: 270-511
Cow position: chr6:56010003-56010249 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 61, 124

Conread position: 270-718
Cow position: chr6:25358413-25357950 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 303
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 85

Conread position: 270-718
Cow position: chr6:33810263-33810717 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 124

Conread position: 273-450
Cow position: chr6:10693974-10694145 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 62

Conread position: 273-718
Cow position: chr6:9738789-9738327 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 273-718
Cow position: chr6:26668549-26668097 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 313

Conread position: 274-608
Cow position: chr6:5130845-5130508 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 169

Conread position: 280-718
Cow position: chr6:35967984-35967540 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 114

Conread position: 282-718
Cow position: chr6:28159903-28160335 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 148

Conread position: 284-706
Cow position: chr6:10267598-10267178 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 95

Conread position: 286-718
Cow position: chr6:56452607-56452169 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 108

Conread position: 288-718
Cow position: chr6:16704233-16703803 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 62

Conread position: 293-716
Cow position: chr6:63405301-63405735 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 55, 122

Conread position: 297-651
Cow position: chr6:7057874-7057523 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 232
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 92

Conread position: 301-717
Cow position: chr6:65905789-65905372 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 302-718
Cow position: chr6:15963374-15962960 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 13

Conread position: 302-720
Cow position: chr6:31010304-31009880 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 16

Conread position: 303-596
Cow position: chr6:58750524-58750230 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 37, 13

Conread position: 306-656
Cow position: chr6:62413495-62413840 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 19, 50

Conread position: 306-718
Cow position: chr6:10634594-10635006 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 54

Conread position: 308-718
Cow position: chr6:45936811-45937224 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 309-703
Cow position: chr6:15031336-15030945 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 28

Conread position: 317-718
Cow position: chr6:24584846-24584450 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 110, 69

Conread position: 324-651
Cow position: chr6:63922498-63922819 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 214
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 15, 32

Conread position: 326-718
Cow position: chr6:41050527-41050923 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 260
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 68

Conread position: 336-717
Cow position: chr6:6120452-6120054 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 337-636
Cow position: chr6:7176767-7176478 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 200, 16

Conread position: 337-718
Cow position: chr6:127587-127206 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 337-718
Cow position: chr6:7468106-7467724 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 18

Conread position: 337-718
Cow position: chr6:19713685-19713308 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 338-698
Cow position: chr6:12534277-12534624 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 242
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 78, 11

Conread position: 338-718
Cow position: chr6:17120935-17121314 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 338-718
Cow position: chr6:65867334-65867713 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 17

Conread position: 341-718
Cow position: chr6:9734405-9734037 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 91

Conread position: 341-718
Cow position: chr6:20450514-20450886 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 341-718
Cow position: chr6:64252134-64251764 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 52

Conread position: 342-651
Cow position: chr6:30318204-30317907 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 7

Conread position: 345-706
Cow position: chr6:44096386-44096746 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 40

Conread position: 345-717
Cow position: chr6:12646787-12647162 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 306

Conread position: 355-718
Cow position: chr6:25409411-25409049 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 125

Conread position: 355-718
Cow position: chr6:26772559-26772195 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 356-718
Cow position: chr6:51876393-51876750 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 140

Conread position: 357-719
Cow position: chr6:1106287-1105918 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 57, 14

Conread position: 358-716
Cow position: chr6:67097873-67098239 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 137, 165

Conread position: 368-603
Cow position: chr6:13696595-13696358 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 205, 0

Conread position: 370-714
Cow position: chr6:24624816-24624474 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 113

Conread position: 371-527
Cow position: chr6:1402903-1402748 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 371-527
Cow position: chr6:1407491-1407336 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 371-711
Cow position: chr6:52194389-52194050 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 40

Conread position: 371-718
Cow position: chr6:4467189-4467537 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 57

Conread position: 379-718
Cow position: chr6:44147373-44147021 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 263

Conread position: 379-718
Cow position: chr6:52696227-52696562 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 9

Conread position: 379-718
Cow position: chr6:55473909-55474233 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 50

Conread position: 380-716
Cow position: chr6:34018000-34018337 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 393-655
Cow position: chr6:23000742-23001005 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 0

Conread position: 394-703
Cow position: chr6:3894041-3893731 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 207

Conread position: 394-718
Cow position: chr6:4904372-4904058 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 395-578
Cow position: chr6:46866903-46866720 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 395-718
Cow position: chr6:1819195-1818873 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 144

Conread position: 395-718
Cow position: chr6:34493280-34493601 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 82

Conread position: 395-718
Cow position: chr6:34504919-34504595 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 82

Conread position: 395-718
Cow position: chr6:34844110-34843787 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 218

Conread position: 395-718
Cow position: chr6:41408008-41408331 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 246

Conread position: 395-718
Cow position: chr6:43778128-43778445 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 25

Conread position: 396-715
Cow position: chr6:19769214-19769524 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 209
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 51

Conread position: 397-717
Cow position: chr6:2367628-2367316 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 214

Conread position: 398-718
Cow position: chr6:43186707-43187031 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 84

Conread position: 398-718
Cow position: chr6:47573389-47573709 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 35

Conread position: 398-718
Cow position: chr6:61179609-61179303 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 169, 0

Conread position: 400-716
Cow position: chr6:3685564-3685876 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 34

Conread position: 401-717
Cow position: chr6:26527534-26527217 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 208
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 179, 17

Conread position: 404-718
Cow position: chr6:26325588-26325273 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 185
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 172, 0

Conread position: 409-718
Cow position: chr6:11354551-11354237 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 412-569
Cow position: chr6:53971321-53971478 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 121, 125

Conread position: 412-714
Cow position: chr6:3015485-3015784 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 125, 117

Conread position: 413-717
Cow position: chr6:3927766-3928073 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 115

Conread position: 413-718
Cow position: chr6:17048991-17049297 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 257

Conread position: 413-718
Cow position: chr6:30270283-30269977 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 415-716
Cow position: chr6:28518294-28517999 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 132, 99

Conread position: 416-574
Cow position: chr6:28642447-28642289 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 416-706
Cow position: chr6:41191944-41192237 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 117, 121

Conread position: 416-718
Cow position: chr6:22679478-22679781 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 420-718
Cow position: chr6:57472581-57472877 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 117

Conread position: 421-718
Cow position: chr6:33490426-33490128 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 424-719
Cow position: chr6:64425124-64425423 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 191

Conread position: 426-716
Cow position: chr6:6474804-6474517 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 148, 239

Conread position: 427-573
Cow position: chr6:47380096-47380240 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 431-702
Cow position: chr6:18963966-18963693 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 435-665
Cow position: chr6:16674378-16674610 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 178

Conread position: 435-718
Cow position: chr6:12351471-12351754 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 203, 191

Conread position: 436-695
Cow position: chr6:47024274-47024532 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 137, 10

Conread position: 436-718
Cow position: chr6:21711204-21711487 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 138, 0

Conread position: 437-652
Cow position: chr6:41264684-41264901 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 96, 100

Conread position: 441-651
Cow position: chr6:662345-662132 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 442-718
Cow position: chr6:43087943-43087666 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 445-717
Cow position: chr6:2543371-2543654 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 86, 22

Conread position: 446-717
Cow position: chr6:66277088-66277365 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 64, 23

Conread position: 448-718
Cow position: chr6:36230871-36230600 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 126, 0

Conread position: 456-716
Cow position: chr6:39359527-39359262 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 99, 18

Conread position: 460-718
Cow position: chr6:53462485-53462229 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 194

Conread position: 461-590
Cow position: chr6:40551445-40551315 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 462-718
Cow position: chr6:27761374-27761628 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 114, 68

Conread position: 467-718
Cow position: chr6:10694137-10694380 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 61, 0

Conread position: 468-718
Cow position: chr6:31913500-31913249 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 108, 0

Conread position: 472-717
Cow position: chr6:22667645-22667403 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 45

Conread position: 474-696
Cow position: chr6:65895378-65895157 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 63

Conread position: 478-662
Cow position: chr6:22806672-22806489 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 38

Conread position: 481-717
Cow position: chr6:34074549-34074787 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 94, 33

Conread position: 481-718
Cow position: chr6:10651097-10650857 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 56

Conread position: 486-718
Cow position: chr6:1888742-1888511 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 51

Conread position: 489-700
Cow position: chr6:705565-705775 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 85, 145

Conread position: 489-718
Cow position: chr6:45975205-45975435 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 87, 0

Conread position: 492-718
Cow position: chr6:59504167-59504380 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 84, 37

Conread position: 495-717
Cow position: chr6:55385971-55386190 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 100

Conread position: 496-712
Cow position: chr6:40759153-40759365 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 80, 55

Conread position: 496-718
Cow position: chr6:49645435-49645652 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 80, 93

Conread position: 501-718
Cow position: chr6:27172539-27172756 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 73, 15

Conread position: 502-716
Cow position: chr6:16418971-16418761 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 74, 37

Conread position: 502-718
Cow position: chr6:39847624-39847840 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 71, 200

Conread position: 504-718
Cow position: chr6:35417230-35417028 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 25, 33

Conread position: 506-716
Cow position: chr6:365604-365815 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 0

Conread position: 514-713
Cow position: chr6:15784251-15784052 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 65, 19

Conread position: 518-716
Cow position: chr6:20553516-20553317 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 536-713
Cow position: chr6:47380421-47380599 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 40, 0

Conread position: 536-718
Cow position: chr6:11289712-11289530 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 24

Conread position: 545-718
Cow position: chr6:28475812-28475985 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 34, 14

Conread position: 548-718
Cow position: chr6:25217712-25217880 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 37, 147

Conread position: 556-706
Cow position: chr6:52249737-52249585 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 560-718
Cow position: chr6:15276473-15276313 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 578-703
Cow position: chr6:11193806-11193679 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.