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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8027O04.5
        

               
Conread position:
               
1-110
               

               
Cow position:
               
chr9:50792851-50792960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr9:2607771-2607927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 151
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr9:10109509-10109670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 151
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:2872479-2872647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:4307222-4307052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:17313632-17313800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:24422822-24422653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:8096416-8096581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr9:59538232-59538428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr9:29333741-29333940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr9:18834197-18833991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr9:129063-128833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr9:22437075-22437320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr9:6708928-6708676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
105, 203
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:35936885-35936621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 207
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:33593266-33593536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
109, 203
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr9:14535162-14535459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr9:20181287-20180986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
228, 129
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:37160683-37160372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:42311823-42312134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 111
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:54680622-54680300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr9:31091313-31091631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 177
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr9:5535088-5534764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 201
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr9:14044760-14045130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr9:17062258-17061890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
132, 294
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr9:1729179-1728792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
110, 205
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr9:13473650-13473267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
103, 156
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr9:6372514-6372138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
111, 133
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr9:51180044-51179652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 207
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr9:44521068-44521442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
207, 111
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr9:28680103-28680502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr9:8656533-8656111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr9:34770296-34770737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 111
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr9:35681538-35681987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 95
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr9:35707704-35708153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 95
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr9:3577355-3576905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 177
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr9:3728958-3729425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 363
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr9:1982951-1983411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 102
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr9:14040064-14039603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 191
               

               
Conread position:
               
1-481
               

               
Cow position:
               
chr9:43666793-43667262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
206, 148
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr9:17900434-17899944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 32
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr9:30828884-30829391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 65
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr9:2552291-2551763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr9:62716682-62717189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 79
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr9:50774981-50775545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chr9:6251390-6251981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 215
               

               
Conread position:
               
1-585
               

               
Cow position:
               
chr9:37174932-37175528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-604
               

               
Cow position:
               
chr9:43303089-43302479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
1-605
               

               
Cow position:
               
chr9:33951069-33950467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 102
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr9:5573867-5573251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
1-636
               

               
Cow position:
               
chr9:50325973-50326621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 202
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr9:19108441-19109085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
1-651
               

               
Cow position:
               
chr9:26569415-26570050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 14
               

               
Conread position:
               
1-665
               

               
Cow position:
               
chr9:39729437-39728788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 152
               

               
Conread position:
               
1-673
               

               
Cow position:
               
chr9:22320569-22319895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 130
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr9:44203941-44203234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-701
               

               
Cow position:
               
chr9:60783944-60784668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
1-705
               

               
Cow position:
               
chr9:5526497-5525777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
1-706
               

               
Cow position:
               
chr9:2680702-2681418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-711
               

               
Cow position:
               
chr9:3310750-3311467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 659
               

               
Conread position:
               
1-713
               

               
Cow position:
               
chr9:27098467-27099188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
1-715
               

               
Cow position:
               
chr9:649912-649199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 199
               

               
Conread position:
               
1-716
               

               
Cow position:
               
chr9:778688-777961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 203
               

               
Conread position:
               
1-716
               

               
Cow position:
               
chr9:1098722-1099447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
1-717
               

               
Cow position:
               
chr9:28658921-28658195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:203159-202429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:1249867-1249142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 204
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:1741708-1741011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:2213276-2213989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:2485486-2484761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:2630730-2631428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 352
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:2807229-2806507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:4648494-4647782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:4941362-4940643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:5006107-5006836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 134
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:7004857-7005574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:7059935-7059210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:9015202-9015929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:10856150-10856875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:10938854-10939579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:14002191-14002895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 69
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:16177723-16178442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:17303836-17303118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:18507696-18506969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:19077800-19078499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 19
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:19157152-19156438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 151
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:20175574-20174865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 52
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:21411440-21412167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 111
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:22441643-22442345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 16
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:27037240-27037963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:28023938-28024674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 177
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:30674198-30674930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 207
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:31809713-31810433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 117
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:32971505-32972222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:35593946-35593234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 48
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:37066996-37067702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:38678263-38678983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:44167733-44168445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 76
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:47004869-47005596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:47044098-47044802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:48796165-48795437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:52525285-52526006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:52722553-52723262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:56302312-56301585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 203
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:59195986-59196712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 134
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:59509038-59508318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 201
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:63670603-63671324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
1-718
               

               
Cow position:
               
chr9:64013093-64012374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 203
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr9:2865856-2865548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 126
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr9:18778920-18778607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:1994277-1994114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
130, 109
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr9:49302101-49301842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr9:8164758-8164480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr9:29043435-29043127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr9:6884461-6884857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
3-459
               

               
Cow position:
               
chr9:28356696-28357160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 140
               

               
Conread position:
               
3-482
               

               
Cow position:
               
chr9:31093929-31093466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
301, 71
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr9:9367139-9367711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 76
               

               
Conread position:
               
3-613
               

               
Cow position:
               
chr9:9515199-9515789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 106
               

               
Conread position:
               
3-716
               

               
Cow position:
               
chr9:23420744-23421446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 67
               

               
Conread position:
               
3-716
               

               
Cow position:
               
chr9:59480719-59479995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 201
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr9:9327905-9327210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
3-718
               

               
Cow position:
               
chr9:24979512-24978813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 145
               

               
Conread position:
               
4-719
               

               
Cow position:
               
chr9:11440549-11439826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 205
               

               
Conread position:
               
4-720
               

               
Cow position:
               
chr9:45875650-45876374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 670
               

               
Conread position:
               
6-718
               

               
Cow position:
               
chr9:50063797-50063081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
9-492
               

               
Cow position:
               
chr9:60324846-60324365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 247
               

               
Conread position:
               
9-707
               

               
Cow position:
               
chr9:4718709-4719390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 15
               

               
Conread position:
               
9-718
               

               
Cow position:
               
chr9:27897170-27897863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 55
               

               
Conread position:
               
10-718
               

               
Cow position:
               
chr9:792171-791460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 110
               

               
Conread position:
               
14-446
               

               
Cow position:
               
chr9:47811925-47812338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
187, 12
               

               
Conread position:
               
15-325
               

               
Cow position:
               
chr9:26122983-26123292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
169, 97
               

               
Conread position:
               
15-716
               

               
Cow position:
               
chr9:1072142-1071431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
15-716
               

               
Cow position:
               
chr9:9198259-9198955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 190
               

               
Conread position:
               
15-718
               

               
Cow position:
               
chr9:5626958-5627674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 189
               

               
Conread position:
               
15-718
               

               
Cow position:
               
chr9:61238798-61238096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 335
               

               
Conread position:
               
17-717
               

               
Cow position:
               
chr9:34240955-34240245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
22-186
               

               
Cow position:
               
chr9:10644215-10644383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
22-596
               

               
Cow position:
               
chr9:1638896-1639480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 303
               

               
Conread position:
               
22-642
               

               
Cow position:
               
chr9:20780049-20780670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 148
               

               
Conread position:
               
23-275
               

               
Cow position:
               
chr9:46041109-46040849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 175
               

               
Conread position:
               
23-718
               

               
Cow position:
               
chr9:59430667-59431363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 195
               

               
Conread position:
               
24-314
               

               
Cow position:
               
chr9:18023104-18023384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
24-500
               

               
Cow position:
               
chr9:26421822-26421339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 177
               

               
Conread position:
               
24-571
               

               
Cow position:
               
chr9:2279820-2280369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 182
               

               
Conread position:
               
25-597
               

               
Cow position:
               
chr9:12726601-12727161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 300
               

               
Conread position:
               
25-718
               

               
Cow position:
               
chr9:2496574-2495886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
26-592
               

               
Cow position:
               
chr9:52035941-52036498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 178
               

               
Conread position:
               
26-716
               

               
Cow position:
               
chr9:31060882-31061572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
26-719
               

               
Cow position:
               
chr9:10568189-10567511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 174
               

               
Conread position:
               
27-596
               

               
Cow position:
               
chr9:11503835-11504405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
34-718
               

               
Cow position:
               
chr9:2526453-2527143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
35-715
               

               
Cow position:
               
chr9:2835827-2835143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 152
               

               
Conread position:
               
41-264
               

               
Cow position:
               
chr9:5861693-5861470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 5
               

               
Conread position:
               
42-481
               

               
Cow position:
               
chr9:22474118-22473671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
43-717
               

               
Cow position:
               
chr9:2594834-2595519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
44-716
               

               
Cow position:
               
chr9:16515926-16516608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
49-636
               

               
Cow position:
               
chr9:2288958-2288358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
50-716
               

               
Cow position:
               
chr9:1063522-1062842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 154
               

               
Conread position:
               
52-645
               

               
Cow position:
               
chr9:30437899-30438493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 60
               

               
Conread position:
               
55-381
               

               
Cow position:
               
chr9:12250300-12250632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 281
               

               
Conread position:
               
58-574
               

               
Cow position:
               
chr9:26738200-26738731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
58-718
               

               
Cow position:
               
chr9:8739305-8738643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
62-313
               

               
Cow position:
               
chr9:8952936-8952697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
167, 50
               

               
Conread position:
               
64-421
               

               
Cow position:
               
chr9:10324009-10324373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 144
               

               
Conread position:
               
66-382
               

               
Cow position:
               
chr9:5453445-5453772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
66-718
               

               
Cow position:
               
chr9:56175967-56176625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
67-718
               

               
Cow position:
               
chr9:3412720-3412065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
81-429
               

               
Cow position:
               
chr9:11712332-11712664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
84-486
               

               
Cow position:
               
chr9:6921544-6921132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
85-718
               

               
Cow position:
               
chr9:3805808-3806453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 222
               

               
Conread position:
               
87-718
               

               
Cow position:
               
chr9:24723002-24723623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chr9:10759678-10759964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
90-310
               

               
Cow position:
               
chr9:51590530-51590755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 198
               

               
Conread position:
               
90-718
               

               
Cow position:
               
chr9:3545044-3545682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
90-718
               

               
Cow position:
               
chr9:52409081-52408470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 110
               

               
Conread position:
               
92-718
               

               
Cow position:
               
chr9:15053658-15053025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
95-718
               

               
Cow position:
               
chr9:31113381-31114018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
96-597
               

               
Cow position:
               
chr9:30489817-30490312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 182
               

               
Conread position:
               
97-716
               

               
Cow position:
               
chr9:55797870-55797251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 128
               

               
Conread position:
               
100-645
               

               
Cow position:
               
chr9:20940691-20941237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
100-716
               

               
Cow position:
               
chr9:26082089-26081463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
101-718
               

               
Cow position:
               
chr9:826695-826079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
102-703
               

               
Cow position:
               
chr9:49755150-49754555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
105-594
               

               
Cow position:
               
chr9:20577068-20577573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 88
               

               
Conread position:
               
116-718
               

               
Cow position:
               
chr9:27782644-27782035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 84
               

               
Conread position:
               
119-527
               

               
Cow position:
               
chr9:3960891-3960482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
120-558
               

               
Cow position:
               
chr9:35158004-35157559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
130-718
               

               
Cow position:
               
chr9:37015734-37015174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
135-718
               

               
Cow position:
               
chr9:35544263-35543673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
137-420
               

               
Cow position:
               
chr9:33069399-33069112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
139-718
               

               
Cow position:
               
chr9:18538934-18539518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
144-718
               

               
Cow position:
               
chr9:6978511-6979058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
160, 187
               

               
Conread position:
               
153-711
               

               
Cow position:
               
chr9:10109948-10110482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
154-525
               

               
Cow position:
               
chr9:64006157-64005781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
154-704
               

               
Cow position:
               
chr9:31418219-31417663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
154-718
               

               
Cow position:
               
chr9:999749-1000320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
154-718
               

               
Cow position:
               
chr9:17632758-17633335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
158-718
               

               
Cow position:
               
chr9:22655102-22655667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
162-707
               

               
Cow position:
               
chr9:27929766-27930293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 240
               

               
Conread position:
               
173-718
               

               
Cow position:
               
chr9:8097480-8098012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
173-720
               

               
Cow position:
               
chr9:2872785-2873331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
178-537
               

               
Cow position:
               
chr9:17541390-17541732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
178-716
               

               
Cow position:
               
chr9:27291656-27291109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 460
               

               
Conread position:
               
178-718
               

               
Cow position:
               
chr9:1430509-1429957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
178-718
               

               
Cow position:
               
chr9:1992227-1991680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
178-718
               

               
Cow position:
               
chr9:4306754-4306214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 73
               

               
Conread position:
               
178-718
               

               
Cow position:
               
chr9:6765462-6764917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
179-502
               

               
Cow position:
               
chr9:47262989-47262668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
185-718
               

               
Cow position:
               
chr9:26276973-26277509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
188-691
               

               
Cow position:
               
chr9:29788349-29787833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
190-655
               

               
Cow position:
               
chr9:46669316-46669770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
195-643
               

               
Cow position:
               
chr9:16821823-16821369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 152
               

               
Conread position:
               
198-714
               

               
Cow position:
               
chr9:7090130-7089612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
209-695
               

               
Cow position:
               
chr9:52514465-52514945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
220-718
               

               
Cow position:
               
chr9:53530091-53530575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
221-651
               

               
Cow position:
               
chr9:9312966-9312530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 322
               

               
Conread position:
               
221-718
               

               
Cow position:
               
chr9:128498-127997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
221-718
               

               
Cow position:
               
chr9:50002810-50003303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
232-651
               

               
Cow position:
               
chr9:59538507-59538930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 123
               

               
Conread position:
               
232-715
               

               
Cow position:
               
chr9:26054413-26054898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 6
               

               
Conread position:
               
232-718
               

               
Cow position:
               
chr9:46668429-46667945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 74
               

               
Conread position:
               
237-716
               

               
Cow position:
               
chr9:6708550-6708064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
242-718
               

               
Cow position:
               
chr9:3060960-3061446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 191
               

               
Conread position:
               
242-718
               

               
Cow position:
               
chr9:17301753-17301275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 74
               

               
Conread position:
               
242-718
               

               
Cow position:
               
chr9:30282637-30282146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 292
               

               
Conread position:
               
243-580
               

               
Cow position:
               
chr9:28003922-28004267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 130
               

               
Conread position:
               
243-713
               

               
Cow position:
               
chr9:56745608-56745144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 102
               

               
Conread position:
               
243-716
               

               
Cow position:
               
chr9:60461113-60460642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
243-717
               

               
Cow position:
               
chr9:26088608-26088145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
243-718
               

               
Cow position:
               
chr9:49117127-49117600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
244-652
               

               
Cow position:
               
chr9:9648580-9648984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
309, 110
               

               
Conread position:
               
245-647
               

               
Cow position:
               
chr9:36584375-36584775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
143, 69
               

               
Conread position:
               
246-718
               

               
Cow position:
               
chr9:1998934-1998440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
251-646
               

               
Cow position:
               
chr9:3797904-3797513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
254-711
               

               
Cow position:
               
chr9:20319189-20319656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
256-718
               

               
Cow position:
               
chr9:35747483-35747029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
257-702
               

               
Cow position:
               
chr9:9560866-9560427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
257-713
               

               
Cow position:
               
chr9:3389401-3388949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
268-718
               

               
Cow position:
               
chr9:43644239-43643797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
271-720
               

               
Cow position:
               
chr9:34946619-34946165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
273-718
               

               
Cow position:
               
chr9:29337173-29337617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
275-538
               

               
Cow position:
               
chr9:63903900-63904157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
281-718
               

               
Cow position:
               
chr9:42903026-42902594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
286-712
               

               
Cow position:
               
chr9:5516612-5517038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 257
               

               
Conread position:
               
288-718
               

               
Cow position:
               
chr9:17017172-17017609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
290-718
               

               
Cow position:
               
chr9:10644214-10643783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
296-650
               

               
Cow position:
               
chr9:64026378-64026023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
300-711
               

               
Cow position:
               
chr9:54995081-54995485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 232
               

               
Conread position:
               
302-716
               

               
Cow position:
               
chr9:26280290-26280698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
303-718
               

               
Cow position:
               
chr9:2029053-2028651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
274, 17
               

               
Conread position:
               
306-690
               

               
Cow position:
               
chr9:3218882-3218513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
308-718
               

               
Cow position:
               
chr9:1515743-1516134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
268, 29
               

               
Conread position:
               
311-596
               

               
Cow position:
               
chr9:56155443-56155151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
328-688
               

               
Cow position:
               
chr9:3935182-3934821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
330-718
               

               
Cow position:
               
chr9:2865088-2864706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
333-574
               

               
Cow position:
               
chr9:8283551-8283791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
333-718
               

               
Cow position:
               
chr9:3757361-3756976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 16
               

               
Conread position:
               
335-554
               

               
Cow position:
               
chr9:37072711-37072504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
336-718
               

               
Cow position:
               
chr9:46626785-46627166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
337-487
               

               
Cow position:
               
chr9:18023564-18023712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
337-680
               

               
Cow position:
               
chr9:30140113-30139780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
337-717
               

               
Cow position:
               
chr9:11157873-11157508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
337-718
               

               
Cow position:
               
chr9:866682-866309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
337-718
               

               
Cow position:
               
chr9:8952551-8952182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 12
               

               
Conread position:
               
337-718
               

               
Cow position:
               
chr9:14794336-14794709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 12
               

               
Conread position:
               
337-718
               

               
Cow position:
               
chr9:52002603-52002240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
341-718
               

               
Cow position:
               
chr9:11544174-11544556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
341-718
               

               
Cow position:
               
chr9:22437831-22438209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
346-707
               

               
Cow position:
               
chr9:1309194-1309541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
349-558
               

               
Cow position:
               
chr9:16750398-16750607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
355-714
               

               
Cow position:
               
chr9:8404909-8405265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
355-718
               

               
Cow position:
               
chr9:14344816-14344463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
185, 20
               

               
Conread position:
               
355-718
               

               
Cow position:
               
chr9:52036883-52037235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
216, 45
               

               
Conread position:
               
357-716
               

               
Cow position:
               
chr9:14766566-14766911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
218, 10
               

               
Conread position:
               
358-718
               

               
Cow position:
               
chr9:218620-218260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 126
               

               
Conread position:
               
358-718
               

               
Cow position:
               
chr9:5453146-5452785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
359-706
               

               
Cow position:
               
chr9:8462705-8462359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
359-717
               

               
Cow position:
               
chr9:29372110-29372465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
199, 54
               

               
Conread position:
               
369-718
               

               
Cow position:
               
chr9:5429973-5430322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 19
               

               
Conread position:
               
370-705
               

               
Cow position:
               
chr9:5534426-5534090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 259
               

               
Conread position:
               
370-712
               

               
Cow position:
               
chr9:13473053-13472712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
139, 208
               

               
Conread position:
               
378-718
               

               
Cow position:
               
chr9:51591143-51591483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
379-649
               

               
Cow position:
               
chr9:36485117-36484848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
180, 198
               

               
Conread position:
               
380-562
               

               
Cow position:
               
chr9:14535949-14536131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-621
               

               
Cow position:
               
chr9:18428010-18427768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
387-706
               

               
Cow position:
               
chr9:6886114-6886435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
388-718
               

               
Cow position:
               
chr9:3074702-3075016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
187, 9
               

               
Conread position:
               
394-696
               

               
Cow position:
               
chr9:16012370-16012075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
394-718
               

               
Cow position:
               
chr9:25976063-25976385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 52
               

               
Conread position:
               
394-718
               

               
Cow position:
               
chr9:34676839-34676521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
395-570
               

               
Cow position:
               
chr9:22569363-22569537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
395-639
               

               
Cow position:
               
chr9:29301433-29301194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
395-701
               

               
Cow position:
               
chr9:51179370-51179066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 289
               

               
Conread position:
               
395-716
               

               
Cow position:
               
chr9:18570002-18569689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
106, 145
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr9:28680731-28681055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr9:37159079-37158755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
395-718
               

               
Cow position:
               
chr9:41507315-41506991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
397-573
               

               
Cow position:
               
chr9:63856117-63856293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-703
               

               
Cow position:
               
chr9:5453450-5453145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-713
               

               
Cow position:
               
chr9:61740505-61740185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
398-718
               

               
Cow position:
               
chr9:50839967-50840288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
398-718
               

               
Cow position:
               
chr9:54459966-54459647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr9:2137150-2137345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
407-718
               

               
Cow position:
               
chr9:2173080-2173390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 130
               

               
Conread position:
               
407-718
               

               
Cow position:
               
chr9:47170589-47170903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
415-717
               

               
Cow position:
               
chr9:7459305-7459014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
415-718
               

               
Cow position:
               
chr9:21461035-21461334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 219
               

               
Conread position:
               
416-718
               

               
Cow position:
               
chr9:13312118-13312420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 87
               

               
Conread position:
               
419-718
               

               
Cow position:
               
chr9:6549732-6550032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
419-718
               

               
Cow position:
               
chr9:33068933-33068640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
425-716
               

               
Cow position:
               
chr9:34695808-34696098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
430-707
               

               
Cow position:
               
chr9:3576704-3576428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 89
               

               
Conread position:
               
431-717
               

               
Cow position:
               
chr9:18108990-18109273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
142, 5
               

               
Conread position:
               
435-703
               

               
Cow position:
               
chr9:58190041-58190304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 64
               

               
Conread position:
               
436-646
               

               
Cow position:
               
chr9:5328793-5328590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
436-716
               

               
Cow position:
               
chr9:3729623-3729901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 101
               

               
Conread position:
               
437-718
               

               
Cow position:
               
chr9:43493517-43493799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
437-718
               

               
Cow position:
               
chr9:43495707-43495989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
440-713
               

               
Cow position:
               
chr9:48797641-48797376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 125
               

               
Conread position:
               
440-718
               

               
Cow position:
               
chr9:3998185-3997903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
442-718
               

               
Cow position:
               
chr9:56427955-56428232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
113, 168
               

               
Conread position:
               
448-718
               

               
Cow position:
               
chr9:34687970-34688228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
451-715
               

               
Cow position:
               
chr9:62444386-62444122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
454-718
               

               
Cow position:
               
chr9:49283434-49283699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 160
               

               
Conread position:
               
455-712
               

               
Cow position:
               
chr9:2189403-2189664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
130, 158
               

               
Conread position:
               
458-718
               

               
Cow position:
               
chr9:7104637-7104376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
462-718
               

               
Cow position:
               
chr9:2856442-2856699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
464-717
               

               
Cow position:
               
chr9:2222528-2222275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
464-717
               

               
Cow position:
               
chr9:36845322-36845073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
470-705
               

               
Cow position:
               
chr9:9260989-9261238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
478-713
               

               
Cow position:
               
chr9:17870108-17870344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
479-651
               

               
Cow position:
               
chr9:23298645-23298471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
489-714
               

               
Cow position:
               
chr9:40143728-40143503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
96, 61
               

               
Conread position:
               
489-717
               

               
Cow position:
               
chr9:9958555-9958329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 145
               

               
Conread position:
               
490-703
               

               
Cow position:
               
chr9:28702047-28702258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
490-718
               

               
Cow position:
               
chr9:31093288-31093064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
491-718
               

               
Cow position:
               
chr9:49456951-49457180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 158
               

               
Conread position:
               
497-718
               

               
Cow position:
               
chr9:12161241-12161463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
497-718
               

               
Cow position:
               
chr9:27004129-27004351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
498-718
               

               
Cow position:
               
chr9:1850981-1850759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
498-718
               

               
Cow position:
               
chr9:42569850-42570071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 86
               

               
Conread position:
               
500-713
               

               
Cow position:
               
chr9:56166776-56166564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
505-714
               

               
Cow position:
               
chr9:23044103-23044323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
506-714
               

               
Cow position:
               
chr9:9492711-9492497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 80
               

               
Conread position:
               
514-718
               

               
Cow position:
               
chr9:11851214-11851009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
520-718
               

               
Cow position:
               
chr9:12250646-12250848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
524-718
               

               
Cow position:
               
chr9:8283548-8283353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
531-716
               

               
Cow position:
               
chr9:28774572-28774389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
536-718
               

               
Cow position:
               
chr9:26325417-26325601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
536-718
               

               
Cow position:
               
chr9:39812987-39813170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
548-718
               

               
Cow position:
               
chr9:17008278-17008107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
553-718
               

               
Cow position:
               
chr9:3052290-3052127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
553-718
               

               
Cow position:
               
chr9:28785027-28785197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
559-718
               

               
Cow position:
               
chr9:3960472-3960312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
561-718
               

               
Cow position:
               
chr9:37097320-37097477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
594-718
               

               
Cow position:
               
chr9:24995981-24996104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
601-718
               

               
Cow position:
               
chr9:46525467-46525351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
610-718
               

               
Cow position:
               
chr9:30475022-30475129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               
Show alignments to all cow chromosomes.