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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8027P23.3
        

               
Conread position:
               
2-242
               

               
Cow position:
               
chrX:27145627-27145856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 96
               

               
Conread position:
               
31-442
               

               
Cow position:
               
chrX:8917446-8917843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 63
               

               
Conread position:
               
165-515
               

               
Cow position:
               
chrX:1810439-1810092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
170-365
               

               
Cow position:
               
chrX:21795224-21795420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
171-390
               

               
Cow position:
               
chrX:32978528-32978308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
171-497
               

               
Cow position:
               
chrX:42462019-42461694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
171-498
               

               
Cow position:
               
chrX:8899753-8900078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
171-523
               

               
Cow position:
               
chrX:24105355-24105700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 28
               

               
Conread position:
               
171-537
               

               
Cow position:
               
chrX:31443092-31442738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
171-540
               

               
Cow position:
               
chrX:6543985-6544347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
171-541
               

               
Cow position:
               
chrX:20340162-20339798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
171-542
               

               
Cow position:
               
chrX:18695192-18694836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
171-546
               

               
Cow position:
               
chrX:16762501-16762871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
171-552
               

               
Cow position:
               
chrX:40557947-40557574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 16
               

               
Conread position:
               
172-443
               

               
Cow position:
               
chrX:34454399-34454667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
172-540
               

               
Cow position:
               
chrX:48195311-48194942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
172-542
               

               
Cow position:
               
chrX:31436210-31436569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
173-436
               

               
Cow position:
               
chrX:30162728-30162994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
173-497
               

               
Cow position:
               
chrX:28845575-28845883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
173-552
               

               
Cow position:
               
chrX:40269207-40269597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
174-444
               

               
Cow position:
               
chrX:28787099-28787358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
174-470
               

               
Cow position:
               
chrX:14924732-14925024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chrX:2300663-2301016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
174-542
               

               
Cow position:
               
chrX:33639697-33640070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
174-542
               

               
Cow position:
               
chrX:38094793-38094425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
175-538
               

               
Cow position:
               
chrX:25337910-25338279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
184-526
               

               
Cow position:
               
chrX:27772222-27771887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
195-542
               

               
Cow position:
               
chrX:7721734-7722083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 251
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chrX:45598853-45598500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 248
               

               
Conread position:
               
202-542
               

               
Cow position:
               
chrX:45501905-45502241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
203-441
               

               
Cow position:
               
chrX:41673864-41674109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
204-540
               

               
Cow position:
               
chrX:23564038-23563698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
204-540
               

               
Cow position:
               
chrX:36283103-36283433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
205-356
               

               
Cow position:
               
chrX:20787420-20787264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
205-472
               

               
Cow position:
               
chrX:11561913-11562187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
205-538
               

               
Cow position:
               
chrX:7161832-7162147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
205-542
               

               
Cow position:
               
chrX:13382087-13382419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
205-542
               

               
Cow position:
               
chrX:43730456-43730129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
205-542
               

               
Cow position:
               
chrX:47054769-47054430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
206-442
               

               
Cow position:
               
chrX:17042450-17042694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
206-507
               

               
Cow position:
               
chrX:41167204-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
206-523
               

               
Cow position:
               
chrX:38072012-38071690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 225
               

               
Conread position:
               
207-442
               

               
Cow position:
               
chrX:19019349-19019105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
207-494
               

               
Cow position:
               
chrX:41198864-41199155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 197
               

               
Conread position:
               
207-542
               

               
Cow position:
               
chrX:9635420-9635096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
208-400
               

               
Cow position:
               
chrX:11581696-11581904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
208-405
               

               
Cow position:
               
chrX:4123597-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
208-423
               

               
Cow position:
               
chrX:21663071-21663287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chrX:39556055-39555854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
208-425
               

               
Cow position:
               
chrX:37956130-37956344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
208-435
               

               
Cow position:
               
chrX:40452451-40452217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 228
               

               
Conread position:
               
208-436
               

               
Cow position:
               
chrX:32020360-32020125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
20, 226
               

               
Conread position:
               
208-436
               

               
Cow position:
               
chrX:42086624-42086852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
111, 157
               

               
Conread position:
               
208-439
               

               
Cow position:
               
chrX:28847117-28846884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 221
               

               
Conread position:
               
208-453
               

               
Cow position:
               
chrX:45566392-45566653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 187
               

               
Conread position:
               
208-456
               

               
Cow position:
               
chrX:20582792-20583035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
208-488
               

               
Cow position:
               
chrX:30862064-30862357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 259
               

               
Conread position:
               
208-491
               

               
Cow position:
               
chrX:28157247-28157542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 178
               

               
Conread position:
               
208-493
               

               
Cow position:
               
chrX:34990803-34991082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
208-497
               

               
Cow position:
               
chrX:42994376-42994663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
208-510
               

               
Cow position:
               
chrX:41743675-41743977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
208-538
               

               
Cow position:
               
chrX:161190-161503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
208-538
               

               
Cow position:
               
chrX:28111268-28111601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
20, 224
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:151663-151994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:4633089-4632764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:8730841-8731186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
18, 215
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:11844479-11844148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:21593045-21593374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
20, 236
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:21672313-21672653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
23, 267
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:27442793-27442446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:29289338-29289671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:31489274-31489613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:32329922-32330259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:44192681-44192351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
208-540
               

               
Cow position:
               
chrX:47344056-47344389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
23, 151
               

               
Conread position:
               
208-541
               

               
Cow position:
               
chrX:24366067-24365727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
208-541
               

               
Cow position:
               
chrX:43567701-43568013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:5118723-5118403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:11082851-11082527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
112, 176
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:13912845-13913170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:15007389-15007054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 234
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:17794747-17795076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:37489496-37489814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:38007006-38006675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:38852960-38853292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chrX:43527265-43527603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 236
               

               
Conread position:
               
208-543
               

               
Cow position:
               
chrX:5872075-5872415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 206
               

               
Conread position:
               
208-543
               

               
Cow position:
               
chrX:13868456-13868798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 234
               

               
Conread position:
               
208-543
               

               
Cow position:
               
chrX:34401759-34402096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 235
               

               
Conread position:
               
208-547
               

               
Cow position:
               
chrX:24424627-24424301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 226
               

               
Conread position:
               
208-547
               

               
Cow position:
               
chrX:27446450-27446786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
20, 233
               

               
Conread position:
               
208-549
               

               
Cow position:
               
chrX:34502682-34503022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
208-552
               

               
Cow position:
               
chrX:11073429-11073086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
208-552
               

               
Cow position:
               
chrX:14884200-14883850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 256
               

               
Conread position:
               
209-542
               

               
Cow position:
               
chrX:11655849-11656176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 230
               

               
Conread position:
               
210-537
               

               
Cow position:
               
chrX:30963108-30962786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
18, 227
               

               
Conread position:
               
212-488
               

               
Cow position:
               
chrX:28836131-28835861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
107, 31
               

               
Conread position:
               
212-540
               

               
Cow position:
               
chrX:42247419-42247089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 146
               

               
Conread position:
               
212-541
               

               
Cow position:
               
chrX:4865017-4865327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
212-542
               

               
Cow position:
               
chrX:11851900-11851583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
212-542
               

               
Cow position:
               
chrX:22074566-22074895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 188
               

               
Conread position:
               
212-542
               

               
Cow position:
               
chrX:29680487-29680166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chrX:41083693-41083917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
214-497
               

               
Cow position:
               
chrX:35681113-35681392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
215-542
               

               
Cow position:
               
chrX:42011048-42011376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
215-543
               

               
Cow position:
               
chrX:33855465-33855122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
215-552
               

               
Cow position:
               
chrX:26625909-26625566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 178
               

               
Conread position:
               
216-442
               

               
Cow position:
               
chrX:38840658-38840890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
216-542
               

               
Cow position:
               
chrX:5900227-5900557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 229
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chrX:40183580-40183348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chrX:17271519-17271275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 187
               

               
Conread position:
               
217-491
               

               
Cow position:
               
chrX:17497866-17498129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
217-529
               

               
Cow position:
               
chrX:29876296-29875995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
217-540
               

               
Cow position:
               
chrX:28878392-28878081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
217-542
               

               
Cow position:
               
chrX:22624251-22624571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 57
               

               
Conread position:
               
217-548
               

               
Cow position:
               
chrX:22812832-22813164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
220-415
               

               
Cow position:
               
chrX:43049116-43049323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
220-475
               

               
Cow position:
               
chrX:10373081-10373348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 168
               

               
Conread position:
               
220-497
               

               
Cow position:
               
chrX:37836360-37836636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
6, 215
               

               
Conread position:
               
220-511
               

               
Cow position:
               
chrX:11455278-11454978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
220-537
               

               
Cow position:
               
chrX:20709845-20710164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
8, 207
               

               
Conread position:
               
220-538
               

               
Cow position:
               
chrX:44961521-44961842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 221
               

               
Conread position:
               
220-542
               

               
Cow position:
               
chrX:20151624-20151951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
8, 291
               

               
Conread position:
               
220-542
               

               
Cow position:
               
chrX:24132377-24132056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
220-542
               

               
Cow position:
               
chrX:37119373-37119688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
220-549
               

               
Cow position:
               
chrX:754732-755066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 221
               

               
Conread position:
               
221-426
               

               
Cow position:
               
chrX:48684448-48684239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
221-449
               

               
Cow position:
               
chrX:3653538-3653767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
221-456
               

               
Cow position:
               
chrX:13265845-13265609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
7, 179
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:12309614-12309293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:17231509-17231828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 163
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:22821822-22822139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:34543562-34543877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:36975724-36976044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
7, 182
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chrX:37843495-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 185
               

               
Conread position:
               
221-541
               

               
Cow position:
               
chrX:35288435-35288747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
221-542
               

               
Cow position:
               
chrX:9252403-9252068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
221-542
               

               
Cow position:
               
chrX:32431402-32431719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
221-552
               

               
Cow position:
               
chrX:4768525-4768837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
221-552
               

               
Cow position:
               
chrX:22482914-22482586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 186
               

               
Conread position:
               
224-426
               

               
Cow position:
               
chrX:47453905-47454115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chrX:13191762-13191572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 177
               

               
Conread position:
               
227-437
               

               
Cow position:
               
chrX:13245373-13245591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 56
               

               
Conread position:
               
227-445
               

               
Cow position:
               
chrX:38227308-38227089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 76
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chrX:35042001-35042234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
227-484
               

               
Cow position:
               
chrX:20792036-20791778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 211
               

               
Conread position:
               
227-537
               

               
Cow position:
               
chrX:30133542-30133227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
228-474
               

               
Cow position:
               
chrX:20752042-20752281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
122, 90
               

               
Conread position:
               
228-502
               

               
Cow position:
               
chrX:43408781-43409064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
230-438
               

               
Cow position:
               
chrX:7362065-7361864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
230-540
               

               
Cow position:
               
chrX:16996293-16996585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
230-542
               

               
Cow position:
               
chrX:7277703-7278006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
13, 133
               

               
Conread position:
               
231-534
               

               
Cow position:
               
chrX:29542433-29542130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 227
               

               
Conread position:
               
232-402
               

               
Cow position:
               
chrX:16324177-16324003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
232-415
               

               
Cow position:
               
chrX:45658286-45658105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
232-421
               

               
Cow position:
               
chrX:7806166-7806362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
232-542
               

               
Cow position:
               
chrX:45967951-45968243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
233-351
               

               
Cow position:
               
chrX:18248099-18248217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
233-363
               

               
Cow position:
               
chrX:10916542-10916671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
233-470
               

               
Cow position:
               
chrX:44835028-44834782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 190
               

               
Conread position:
               
233-535
               

               
Cow position:
               
chrX:13323209-13322899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
233-538
               

               
Cow position:
               
chrX:6278718-6278407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 205
               

               
Conread position:
               
233-542
               

               
Cow position:
               
chrX:12437452-12437177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
233-550
               

               
Cow position:
               
chrX:5017620-5017317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 87
               

               
Conread position:
               
234-348
               

               
Cow position:
               
chrX:47247120-47247005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
234-351
               

               
Cow position:
               
chrX:45787443-45787561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
234-356
               

               
Cow position:
               
chrX:33519406-33519530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
234-367
               

               
Cow position:
               
chrX:25283357-25283224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
234-370
               

               
Cow position:
               
chrX:7382112-7382253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
234-388
               

               
Cow position:
               
chrX:42499240-42499077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
234-391
               

               
Cow position:
               
chrX:35268679-35268832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
234-391
               

               
Cow position:
               
chrX:42855197-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
234-400
               

               
Cow position:
               
chrX:35937287-35937121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
234-403
               

               
Cow position:
               
chrX:2206755-2206588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
234-409
               

               
Cow position:
               
chrX:45693895-45694070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
234-415
               

               
Cow position:
               
chrX:24149428-24149615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chrX:4942961-4942780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chrX:44063929-44063737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
234-432
               

               
Cow position:
               
chrX:12115828-12116037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
234-432
               

               
Cow position:
               
chrX:31745258-31745071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
234-432
               

               
Cow position:
               
chrX:41403761-41403970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-432
               

               
Cow position:
               
chrX:41410309-41410518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-434
               

               
Cow position:
               
chrX:42587640-42587435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
234-436
               

               
Cow position:
               
chrX:15485839-15485629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
234-436
               

               
Cow position:
               
chrX:27514657-27514864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
88, 157
               

               
Conread position:
               
234-437
               

               
Cow position:
               
chrX:47757140-47756932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 155
               

               
Conread position:
               
234-443
               

               
Cow position:
               
chrX:2186047-2186253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
234-443
               

               
Cow position:
               
chrX:42339147-42338943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 114
               

               
Conread position:
               
234-444
               

               
Cow position:
               
chrX:45412866-45412654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 85
               

               
Conread position:
               
234-445
               

               
Cow position:
               
chrX:33803224-33803002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
234-449
               

               
Cow position:
               
chrX:44053047-44053266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
234-450
               

               
Cow position:
               
chrX:16284158-16283936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
79, 162
               

               
Conread position:
               
234-450
               

               
Cow position:
               
chrX:35284411-35284632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
234-456
               

               
Cow position:
               
chrX:7425254-7425484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 150
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chrX:8558674-8558435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
234-469
               

               
Cow position:
               
chrX:29509655-29509417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 205
               

               
Conread position:
               
234-475
               

               
Cow position:
               
chrX:48370885-48371119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 156
               

               
Conread position:
               
234-480
               

               
Cow position:
               
chrX:10095815-10096065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 139
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chrX:26940703-26940461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
234-491
               

               
Cow position:
               
chrX:9953930-9954183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
79, 176
               

               
Conread position:
               
234-491
               

               
Cow position:
               
chrX:32743327-32743582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
143, 208
               

               
Conread position:
               
234-491
               

               
Cow position:
               
chrX:41560450-41560213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
234-497
               

               
Cow position:
               
chrX:10437876-10437611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
234-497
               

               
Cow position:
               
chrX:18456181-18456456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 219
               

               
Conread position:
               
234-497
               

               
Cow position:
               
chrX:19015231-19015487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
234-497
               

               
Cow position:
               
chrX:47191610-47191357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
192, 73
               

               
Conread position:
               
234-497
               

               
Cow position:
               
chrX:48243663-48243416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
234-498
               

               
Cow position:
               
chrX:40788993-40789263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
234-510
               

               
Cow position:
               
chrX:25232379-25232656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
84, 215
               

               
Conread position:
               
234-511
               

               
Cow position:
               
chrX:31260841-31260555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 142
               

               
Conread position:
               
234-511
               

               
Cow position:
               
chrX:34192466-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
234-520
               

               
Cow position:
               
chrX:9855089-9855369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
85, 176
               

               
Conread position:
               
234-529
               

               
Cow position:
               
chrX:619219-618920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 202
               

               
Conread position:
               
234-530
               

               
Cow position:
               
chrX:45113417-45113702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 68
               

               
Conread position:
               
234-538
               

               
Cow position:
               
chrX:6265797-6265508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
234-538
               

               
Cow position:
               
chrX:21064075-21064375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
234-538
               

               
Cow position:
               
chrX:31949142-31948844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
234-538
               

               
Cow position:
               
chrX:39558559-39558257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
234-538
               

               
Cow position:
               
chrX:40692949-40692660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
144, 48
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chrX:14599318-14599625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 193
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chrX:20801568-20801861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chrX:32171093-32170797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:841947-842250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 198
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:3654393-3654701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 219
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:9416904-9416591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
86, 250
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:11856218-11856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:15814886-15815177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:20697819-20697516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 180
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:23583347-23583654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:25816107-25815808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
203, 119
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:27174783-27175091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:27509231-27508931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:33466402-33466717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
68, 132
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:37232198-37232500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 203
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:38935070-38935372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:40826958-40826658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:42470148-42469848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 132
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:46722952-46722641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 201
               

               
Conread position:
               
234-540
               

               
Cow position:
               
chrX:47967388-47967700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:1514612-1514324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:6690459-6690165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:7508928-7509234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:7571695-7572000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 121
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:7646047-7646346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
10, 153
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:11633467-11633777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
85, 202
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:12980042-12979739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 170
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:13647995-13647690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 177
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:14973947-14973651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:17888617-17888328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:23091670-23091966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 129
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:27394225-27393931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:27432130-27431823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 205
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:29602044-29601733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 216
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:35542680-35542982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 187
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:37574645-37574935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:37910241-37910540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:38549237-38549542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 125
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:43114960-43115245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chrX:45414511-45414209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 204
               

               
Conread position:
               
234-543
               

               
Cow position:
               
chrX:1616259-1615945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 208
               

               
Conread position:
               
234-543
               

               
Cow position:
               
chrX:6488375-6488672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
234-544
               

               
Cow position:
               
chrX:26440991-26440686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
87, 206
               

               
Conread position:
               
234-545
               

               
Cow position:
               
chrX:3130370-3130670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 92
               

               
Conread position:
               
234-547
               

               
Cow position:
               
chrX:17662808-17662498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 201
               

               
Conread position:
               
234-549
               

               
Cow position:
               
chrX:27176531-27176211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 202
               

               
Conread position:
               
234-549
               

               
Cow position:
               
chrX:32623371-32623673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
234-551
               

               
Cow position:
               
chrX:23514229-23513911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:9201336-9201653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:13177676-13177371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 152
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:35413421-35413715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
164, 68
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:40567388-40567726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 160
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:41884629-41884307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 217
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chrX:42381311-42381007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
235-412
               

               
Cow position:
               
chrX:46430069-46429889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 172
               

               
Conread position:
               
235-415
               

               
Cow position:
               
chrX:9997544-9997361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
235-421
               

               
Cow position:
               
chrX:38967439-38967628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
235-485
               

               
Cow position:
               
chrX:26285770-26286019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
236-361
               

               
Cow position:
               
chrX:29049760-29049884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
236-393
               

               
Cow position:
               
chrX:23061244-23061398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
236-408
               

               
Cow position:
               
chrX:877233-877061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
84, 148
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chrX:33020276-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
236-425
               

               
Cow position:
               
chrX:2648560-2648369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
236-428
               

               
Cow position:
               
chrX:30921976-30922173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
236-432
               

               
Cow position:
               
chrX:16790047-16789861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
236-436
               

               
Cow position:
               
chrX:15596828-15597029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 157
               

               
Conread position:
               
236-437
               

               
Cow position:
               
chrX:15147396-15147191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
236-442
               

               
Cow position:
               
chrX:9161378-9161587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
236-443
               

               
Cow position:
               
chrX:2383279-2383491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
236-444
               

               
Cow position:
               
chrX:28097915-28098115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
236-447
               

               
Cow position:
               
chrX:15329443-15329654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 124
               

               
Conread position:
               
236-448
               

               
Cow position:
               
chrX:1978300-1978519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
236-449
               

               
Cow position:
               
chrX:1503129-1503345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 163
               

               
Conread position:
               
236-451
               

               
Cow position:
               
chrX:35925755-35925965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
236-469
               

               
Cow position:
               
chrX:41790654-41790421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 148
               

               
Conread position:
               
236-480
               

               
Cow position:
               
chrX:11746632-11746886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 200
               

               
Conread position:
               
236-486
               

               
Cow position:
               
chrX:23970179-23970418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
236-487
               

               
Cow position:
               
chrX:25237967-25238219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 139
               

               
Conread position:
               
236-488
               

               
Cow position:
               
chrX:40647768-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 211
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chrX:32128190-32127950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
61, 71
               

               
Conread position:
               
236-491
               

               
Cow position:
               
chrX:25419371-25419104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 241
               

               
Conread position:
               
236-497
               

               
Cow position:
               
chrX:42874768-42875033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 209
               

               
Conread position:
               
236-517
               

               
Cow position:
               
chrX:19930446-19930721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
236-528
               

               
Cow position:
               
chrX:14900931-14900652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
236-532
               

               
Cow position:
               
chrX:5638379-5638084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
236-534
               

               
Cow position:
               
chrX:17541754-17542047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 152
               

               
Conread position:
               
236-538
               

               
Cow position:
               
chrX:21664933-21664629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
236-538
               

               
Cow position:
               
chrX:31729246-31729533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
236-539
               

               
Cow position:
               
chrX:34663053-34662754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
236-539
               

               
Cow position:
               
chrX:35224092-35224388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:2467670-2467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 186
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:10866077-10865782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
63, 202
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:12290526-12290812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:20887854-20887548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:21642688-21642389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:34238511-34238812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 145
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:42492724-42492430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:46532719-46532402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:48652937-48652628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
236-541
               

               
Cow position:
               
chrX:19690008-19690309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 138
               

               
Conread position:
               
236-541
               

               
Cow position:
               
chrX:33493565-33493870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:878581-878285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:8797038-8797344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 208
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:9041439-9041149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:17631012-17630706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
77, 135
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:17964732-17964427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 207
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:28134136-28134433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
67, 103
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:32309896-32310200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:34376747-34377037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:34441660-34441359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chrX:37072196-37072484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
236-543
               

               
Cow position:
               
chrX:488280-488600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
236-543
               

               
Cow position:
               
chrX:42171509-42171198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 203
               

               
Conread position:
               
236-552
               

               
Cow position:
               
chrX:30543496-30543179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
236-552
               

               
Cow position:
               
chrX:41122862-41123164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
237-386
               

               
Cow position:
               
chrX:25036908-25036750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
237-393
               

               
Cow position:
               
chrX:6639917-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
237-408
               

               
Cow position:
               
chrX:36778199-36778379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
237-428
               

               
Cow position:
               
chrX:45015378-45015566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chrX:7718646-7718845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 164
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:21665802-21665600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
237-438
               

               
Cow position:
               
chrX:35388114-35387906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
84, 205
               

               
Conread position:
               
237-444
               

               
Cow position:
               
chrX:43647950-43647743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chrX:11674857-11675070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chrX:25571202-25570982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chrX:47248993-47248720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
237-512
               

               
Cow position:
               
chrX:9425950-9425678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
237-520
               

               
Cow position:
               
chrX:6234657-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 216
               

               
Conread position:
               
237-525
               

               
Cow position:
               
chrX:678776-678477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 111
               

               
Conread position:
               
237-530
               

               
Cow position:
               
chrX:16416300-16416592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
237-531
               

               
Cow position:
               
chrX:28632688-28632401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
237-534
               

               
Cow position:
               
chrX:7497035-7497330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
237-537
               

               
Cow position:
               
chrX:48236603-48236908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 203
               

               
Conread position:
               
237-538
               

               
Cow position:
               
chrX:3154455-3154151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 171
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:4269276-4268971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 197
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:28013648-28013349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:31294752-31294479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:40481080-40480779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:45404042-45403732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 208
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:47046728-47046421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 208
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:47481591-47481889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 204
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chrX:47873549-47873243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
237-541
               

               
Cow position:
               
chrX:40035653-40035346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chrX:6413838-6414136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chrX:8925497-8925794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chrX:34532320-34532615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chrX:38936492-38936795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
82, 125
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chrX:45430225-45429927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
237-543
               

               
Cow position:
               
chrX:46073029-46072719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 211
               

               
Conread position:
               
237-549
               

               
Cow position:
               
chrX:34411632-34411948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chrX:45845887-45846206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 205
               

               
Conread position:
               
238-411
               

               
Cow position:
               
chrX:44731387-44731568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
238-428
               

               
Cow position:
               
chrX:7513307-7513497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 168
               

               
Conread position:
               
238-437
               

               
Cow position:
               
chrX:42282225-42282424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
87, 123
               

               
Conread position:
               
238-437
               

               
Cow position:
               
chrX:46315588-46315381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
238-440
               

               
Cow position:
               
chrX:8682137-8681928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
238-440
               

               
Cow position:
               
chrX:36840664-36840869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
238-443
               

               
Cow position:
               
chrX:40540351-40540137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
238-453
               

               
Cow position:
               
chrX:35609779-35610002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chrX:39546182-39545949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
238-479
               

               
Cow position:
               
chrX:23497872-23497635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 191
               

               
Conread position:
               
238-489
               

               
Cow position:
               
chrX:2029182-2029442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
238-497
               

               
Cow position:
               
chrX:12249599-12249861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
238-517
               

               
Cow position:
               
chrX:26876089-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
238-532
               

               
Cow position:
               
chrX:42507856-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
238-536
               

               
Cow position:
               
chrX:44396807-44397099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 128
               

               
Conread position:
               
238-537
               

               
Cow position:
               
chrX:7351092-7351388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
238-538
               

               
Cow position:
               
chrX:32420011-32420303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 182
               

               
Conread position:
               
238-539
               

               
Cow position:
               
chrX:48248617-48248915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:3579737-3580037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
83, 169
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:10831704-10831394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 204
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:21004474-21004777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:46032929-46032634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
81, 194
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:48010387-48010697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 206
               

               
Conread position:
               
238-542
               

               
Cow position:
               
chrX:4044058-4043772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
238-542
               

               
Cow position:
               
chrX:7695552-7695844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
238-542
               

               
Cow position:
               
chrX:27680194-27680493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
238-542
               

               
Cow position:
               
chrX:35273144-35273459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 150
               

               
Conread position:
               
238-552
               

               
Cow position:
               
chrX:28866200-28865901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
239-437
               

               
Cow position:
               
chrX:37048786-37048581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
239-440
               

               
Cow position:
               
chrX:19188730-19188937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
239-441
               

               
Cow position:
               
chrX:3395970-3395767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
239-442
               

               
Cow position:
               
chrX:11806223-11806012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
239-442
               

               
Cow position:
               
chrX:29032208-29032411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 89
               

               
Conread position:
               
239-453
               

               
Cow position:
               
chrX:4750507-4750293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
239-458
               

               
Cow position:
               
chrX:1728626-1728411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 128
               

               
Conread position:
               
239-480
               

               
Cow position:
               
chrX:38439268-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 203
               

               
Conread position:
               
239-497
               

               
Cow position:
               
chrX:15139750-15139497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
239-516
               

               
Cow position:
               
chrX:11313987-11313711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
239-538
               

               
Cow position:
               
chrX:157982-157686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
239-540
               

               
Cow position:
               
chrX:16541884-16541564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
74, 270
               

               
Conread position:
               
239-540
               

               
Cow position:
               
chrX:31250183-31250481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 189
               

               
Conread position:
               
239-540
               

               
Cow position:
               
chrX:38963900-38964201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
239-540
               

               
Cow position:
               
chrX:46587611-46587915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
84, 202
               

               
Conread position:
               
239-542
               

               
Cow position:
               
chrX:10959607-10959300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
82, 203
               

               
Conread position:
               
239-542
               

               
Cow position:
               
chrX:38642051-38642344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
82, 138
               

               
Conread position:
               
239-545
               

               
Cow position:
               
chrX:45993006-45993328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
239-552
               

               
Cow position:
               
chrX:11717989-11717678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 129
               

               
Conread position:
               
239-552
               

               
Cow position:
               
chrX:41238572-41238250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chrX:25411631-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
240-422
               

               
Cow position:
               
chrX:24200984-24201168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
240-436
               

               
Cow position:
               
chrX:15545689-15545887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
240-444
               

               
Cow position:
               
chrX:10302133-10302339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
240-448
               

               
Cow position:
               
chrX:160241-160025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
240-450
               

               
Cow position:
               
chrX:35409460-35409668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 51
               

               
Conread position:
               
240-457
               

               
Cow position:
               
chrX:25848711-25848928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chrX:630513-630255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
240-497
               

               
Cow position:
               
chrX:34270201-34270452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
240-510
               

               
Cow position:
               
chrX:39938728-39938460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
77, 133
               

               
Conread position:
               
240-538
               

               
Cow position:
               
chrX:25713591-25713887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chrX:29120851-29121139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
240-540
               

               
Cow position:
               
chrX:1055595-1055288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
240-540
               

               
Cow position:
               
chrX:41879140-41878841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 153
               

               
Conread position:
               
240-542
               

               
Cow position:
               
chrX:917577-917273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
80, 135
               

               
Conread position:
               
240-542
               

               
Cow position:
               
chrX:17725769-17726070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
240-542
               

               
Cow position:
               
chrX:24259787-24259484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
240-542
               

               
Cow position:
               
chrX:34565088-34565379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
240-552
               

               
Cow position:
               
chrX:10412195-10411881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
241-540
               

               
Cow position:
               
chrX:27705385-27705679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chrX:280927-281130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
243-461
               

               
Cow position:
               
chrX:4091445-4091668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
243-485
               

               
Cow position:
               
chrX:9227185-9226936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 179
               

               
Conread position:
               
245-474
               

               
Cow position:
               
chrX:17908484-17908261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
245-540
               

               
Cow position:
               
chrX:1176183-1175890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 177
               

               
Conread position:
               
245-542
               

               
Cow position:
               
chrX:1499469-1499760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 152
               

               
Conread position:
               
245-542
               

               
Cow position:
               
chrX:43780053-43779752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 199
               

               
Conread position:
               
246-441
               

               
Cow position:
               
chrX:30833045-30832848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
75, 154
               

               
Conread position:
               
246-450
               

               
Cow position:
               
chrX:28105721-28105925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
246-453
               

               
Cow position:
               
chrX:45148975-45149196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
246-541
               

               
Cow position:
               
chrX:47144888-47145179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
247-448
               

               
Cow position:
               
chrX:31340506-31340716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 201
               

               
Conread position:
               
247-535
               

               
Cow position:
               
chrX:12405575-12405293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:25035587-25035289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
5, 193
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:29545078-29544784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 190
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:44054603-44054895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
247-540
               

               
Cow position:
               
chrX:47301102-47300810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 137
               

               
Conread position:
               
247-542
               

               
Cow position:
               
chrX:38218508-38218809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
247-552
               

               
Cow position:
               
chrX:34554530-34554829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
113, 181
               

               
Conread position:
               
248-412
               

               
Cow position:
               
chrX:10252379-10252210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
248-463
               

               
Cow position:
               
chrX:48247034-48246830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
248-494
               

               
Cow position:
               
chrX:36961438-36961688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 198
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chrX:33000706-33000998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 193
               

               
Conread position:
               
248-540
               

               
Cow position:
               
chrX:40809489-40809786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
69, 184
               

               
Conread position:
               
248-552
               

               
Cow position:
               
chrX:37781315-37781004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 200
               

               
Conread position:
               
250-477
               

               
Cow position:
               
chrX:40116226-40116447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 166
               

               
Conread position:
               
250-540
               

               
Cow position:
               
chrX:47484467-47484171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
73, 199
               

               
Conread position:
               
251-526
               

               
Cow position:
               
chrX:11589783-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
251-538
               

               
Cow position:
               
chrX:41526718-41526437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
251-542
               

               
Cow position:
               
chrX:11939121-11938838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
252-453
               

               
Cow position:
               
chrX:18195748-18195951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
253-452
               

               
Cow position:
               
chrX:37540932-37541140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 151
               

               
Conread position:
               
253-510
               

               
Cow position:
               
chrX:8991695-8991954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 192
               

               
Conread position:
               
253-537
               

               
Cow position:
               
chrX:45110463-45110747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
253-542
               

               
Cow position:
               
chrX:8869601-8869307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
253-542
               

               
Cow position:
               
chrX:39126144-39126421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
253-552
               

               
Cow position:
               
chrX:38066631-38066350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
255-410
               

               
Cow position:
               
chrX:23785463-23785632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:3489075-3488798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:44657155-44656864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 199
               

               
Conread position:
               
255-542
               

               
Cow position:
               
chrX:31311835-31312124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 150
               

               
Conread position:
               
255-552
               

               
Cow position:
               
chrX:47362802-47362518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
256-458
               

               
Cow position:
               
chrX:1505523-1505726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
257-530
               

               
Cow position:
               
chrX:13785544-13785280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chrX:32820840-32821121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
257-542
               

               
Cow position:
               
chrX:42235722-42235429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
42, 190
               

               
Conread position:
               
259-439
               

               
Cow position:
               
chrX:31256681-31256864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
260-538
               

               
Cow position:
               
chrX:31252230-31252499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
5, 30
               

               
Conread position:
               
261-549
               

               
Cow position:
               
chrX:36067835-36068117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
262-444
               

               
Cow position:
               
chrX:46146746-46146560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 102
               

               
Conread position:
               
263-441
               

               
Cow position:
               
chrX:14003825-14003641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
265-542
               

               
Cow position:
               
chrX:7336646-7336936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
266-511
               

               
Cow position:
               
chrX:48044379-48044135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
267-425
               

               
Cow position:
               
chrX:45759219-45759376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
267-491
               

               
Cow position:
               
chrX:16514443-16514218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
267-540
               

               
Cow position:
               
chrX:36060973-36061253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 187
               

               
Conread position:
               
268-541
               

               
Cow position:
               
chrX:47186498-47186230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
269-540
               

               
Cow position:
               
chrX:47166061-47165793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
270-540
               

               
Cow position:
               
chrX:18485619-18485896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
270-542
               

               
Cow position:
               
chrX:169701-169451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
270-542
               

               
Cow position:
               
chrX:27145447-27145699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
272-528
               

               
Cow position:
               
chrX:22465782-22466037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
162, 80
               

               
Conread position:
               
272-540
               

               
Cow position:
               
chrX:35885903-35885634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
272-543
               

               
Cow position:
               
chrX:22387421-22387154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 172
               

               
Conread position:
               
273-487
               

               
Cow position:
               
chrX:37750426-37750214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 163
               

               
Conread position:
               
273-540
               

               
Cow position:
               
chrX:46433310-46433584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 175
               

               
Conread position:
               
274-532
               

               
Cow position:
               
chrX:4398954-4399211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
274-540
               

               
Cow position:
               
chrX:34792482-34792219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
46, 161
               

               
Conread position:
               
276-453
               

               
Cow position:
               
chrX:23666953-23667135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
44, 164
               

               
Conread position:
               
279-540
               

               
Cow position:
               
chrX:6407382-6407636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
279-540
               

               
Cow position:
               
chrX:8917226-8917487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
42, 164
               

               
Conread position:
               
279-540
               

               
Cow position:
               
chrX:22921147-22921414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
279-540
               

               
Cow position:
               
chrX:44836828-44837069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
280-491
               

               
Cow position:
               
chrX:41992207-41992002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chrX:37955672-37955940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
280-542
               

               
Cow position:
               
chrX:14275901-14275648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
282-542
               

               
Cow position:
               
chrX:27206636-27206895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 169
               

               
Conread position:
               
282-542
               

               
Cow position:
               
chrX:41068564-41068820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
283-540
               

               
Cow position:
               
chrX:45875239-45875485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
285-442
               

               
Cow position:
               
chrX:31273088-31273247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
287-538
               

               
Cow position:
               
chrX:45976765-45977017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
6, 150
               

               
Conread position:
               
287-542
               

               
Cow position:
               
chrX:36355957-36356201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
288-540
               

               
Cow position:
               
chrX:27227966-27228219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 155
               

               
Conread position:
               
290-441
               

               
Cow position:
               
chrX:35969238-35969085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
293-426
               

               
Cow position:
               
chrX:10366373-10366241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
297-533
               

               
Cow position:
               
chrX:9365822-9365590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 125
               

               
Conread position:
               
303-540
               

               
Cow position:
               
chrX:40685468-40685235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
305-539
               

               
Cow position:
               
chrX:48014301-48014527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
305-540
               

               
Cow position:
               
chrX:41027021-41027252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
305-542
               

               
Cow position:
               
chrX:616398-616164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
305-542
               

               
Cow position:
               
chrX:5919360-5919587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
305-542
               

               
Cow position:
               
chrX:21986428-21986196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
305-542
               

               
Cow position:
               
chrX:34313889-34314119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 142
               

               
Conread position:
               
306-549
               

               
Cow position:
               
chrX:7710678-7710437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
307-542
               

               
Cow position:
               
chrX:29194100-29194324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
308-540
               

               
Cow position:
               
chrX:34315393-34315614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
208, 15
               

               
Conread position:
               
309-542
               

               
Cow position:
               
chrX:19273855-19273612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
310-540
               

               
Cow position:
               
chrX:15231789-15231567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
310-542
               

               
Cow position:
               
chrX:27685116-27685344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
312-540
               

               
Cow position:
               
chrX:38728608-38728827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
312-542
               

               
Cow position:
               
chrX:11614570-11614788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
312-542
               

               
Cow position:
               
chrX:37986104-37986320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
314-536
               

               
Cow position:
               
chrX:16055084-16055296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
321-541
               

               
Cow position:
               
chrX:23562515-23562726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
321-542
               

               
Cow position:
               
chrX:20584204-20584423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
321-542
               

               
Cow position:
               
chrX:26881688-26881470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
321-542
               

               
Cow position:
               
chrX:34505167-34504953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
206, 62
               

               
Conread position:
               
321-552
               

               
Cow position:
               
chrX:41870953-41871172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
322-528
               

               
Cow position:
               
chrX:19003181-19003374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
322-540
               

               
Cow position:
               
chrX:27946178-27945961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
322-540
               

               
Cow position:
               
chrX:40320286-40320499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
323-544
               

               
Cow position:
               
chrX:5679684-5679475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
324-541
               

               
Cow position:
               
chrX:39415484-39415276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
324-552
               

               
Cow position:
               
chrX:21566285-21566512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
325-540
               

               
Cow position:
               
chrX:24331662-24331869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
325-541
               

               
Cow position:
               
chrX:46291023-46291231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
327-552
               

               
Cow position:
               
chrX:42927933-42927719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
328-511
               

               
Cow position:
               
chrX:38654543-38654366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
328-534
               

               
Cow position:
               
chrX:9651138-9650937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
328-542
               

               
Cow position:
               
chrX:29229896-29230094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
328-552
               

               
Cow position:
               
chrX:33539052-33539275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
330-540
               

               
Cow position:
               
chrX:17949601-17949400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
337-542
               

               
Cow position:
               
chrX:31515065-31515269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
339-538
               

               
Cow position:
               
chrX:10516154-10516344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
342-540
               

               
Cow position:
               
chrX:21327804-21328006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
342-547
               

               
Cow position:
               
chrX:16348669-16348471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
342-552
               

               
Cow position:
               
chrX:18273156-18272953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chrX:34837150-34836969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
346-542
               

               
Cow position:
               
chrX:38560462-38560654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
349-503
               

               
Cow position:
               
chrX:45648781-45648930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
349-552
               

               
Cow position:
               
chrX:1466069-1466267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chrX:4296910-4296732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chrX:29050156-29050342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
350-552
               

               
Cow position:
               
chrX:918818-918611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
138, 88
               

               
Conread position:
               
355-535
               

               
Cow position:
               
chrX:1572223-1572051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
357-541
               

               
Cow position:
               
chrX:23113194-23113379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chrX:42855371-42855553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
358-541
               

               
Cow position:
               
chrX:41192625-41192798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
359-534
               

               
Cow position:
               
chrX:5135607-5135436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
361-540
               

               
Cow position:
               
chrX:36514974-36514799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
155, 73
               

               
Conread position:
               
362-542
               

               
Cow position:
               
chrX:22115396-22115222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
363-542
               

               
Cow position:
               
chrX:4515606-4515785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
371-542
               

               
Cow position:
               
chrX:4153105-4152936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
375-542
               

               
Cow position:
               
chrX:12082391-12082229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
375-547
               

               
Cow position:
               
chrX:19965468-19965297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
385-542
               

               
Cow position:
               
chrX:19469562-19469411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
386-542
               

               
Cow position:
               
chrX:46429875-46429724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
387-542
               

               
Cow position:
               
chrX:35985764-35985913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
392-542
               

               
Cow position:
               
chrX:22393035-22392889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
393-542
               

               
Cow position:
               
chrX:44095209-44095355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
396-552
               

               
Cow position:
               
chrX:27306407-27306559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
397-542
               

               
Cow position:
               
chrX:6599828-6599687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
398-542
               

               
Cow position:
               
chrX:11326143-11326002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
401-542
               

               
Cow position:
               
chrX:16984587-16984736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
401-542
               

               
Cow position:
               
chrX:40532084-40531948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
403-542
               

               
Cow position:
               
chrX:29585082-29585214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
447-542
               

               
Cow position:
               
chrX:4466967-4467062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
447-542
               

               
Cow position:
               
chrX:27668958-27668863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
448-542
               

               
Cow position:
               
chrX:2935958-2936052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.