Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028O07.5 |
| Conread position: | 438-671 |
| Cow position: | chr10:34821267-34821028 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 443-769 |
| Cow position: | chr10:29185478-29185150 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 445-763 |
| Cow position: | chr10:34811031-34810695 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 445-767 |
| Cow position: | chr10:33345743-33346065 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 446-664 |
| Cow position: | chr10:79126-79356 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 446-664 |
| Cow position: | chr10:2086319-2086541 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 446-673 |
| Cow position: | chr10:57744221-57743993 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 446-699 |
| Cow position: | chr10:51427700-51427431 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 446-735 |
| Cow position: | chr10:55533922-55534232 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 446-736 |
| Cow position: | chr10:8843582-8843272 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 446-742 |
| Cow position: | chr10:6532930-6533232 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 446-750 |
| Cow position: | chr10:22979761-22980064 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 446-752 |
| Cow position: | chr10:25950855-25951172 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 243 |
| Conread position: | 446-767 |
| Cow position: | chr10:54400993-54400661 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 446-770 |
| Cow position: | chr10:35305298-35304973 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 446-821 |
| Cow position: | chr10:23690487-23690100 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 447-750 |
| Cow position: | chr10:27173670-27173985 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 235 |
| Conread position: | 447-750 |
| Cow position: | chr10:37311396-37311711 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 63, 98 |
| Conread position: | 447-783 |
| Cow position: | chr10:34560788-34561148 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 448-750 |
| Cow position: | chr10:55641358-55641041 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 254 |
| Conread position: | 448-820 |
| Cow position: | chr10:54159831-54159442 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 205 |
| Conread position: | 456-749 |
| Cow position: | chr10:4337135-4337427 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 457-708 |
| Cow position: | chr10:57295721-57295978 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 466-769 |
| Cow position: | chr10:28718355-28718033 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 236 |
| Conread position: | 477-738 |
| Cow position: | chr10:38882279-38882534 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 484-736 |
| Cow position: | chr10:15830818-15831082 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 502-768 |
| Cow position: | chr10:13162438-13162708 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 526-773 |
| Cow position: | chr10:60428325-60428578 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 242 |
| Conread position: | 528-768 |
| Cow position: | chr10:68267677-68267428 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 530-716 |
| Cow position: | chr10:59519731-59519542 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 530-749 |
| Cow position: | chr10:153198-152973 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 530-752 |
| Cow position: | chr10:35443873-35443648 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 530-768 |
| Cow position: | chr10:38155111-38154867 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 531-748 |
| Cow position: | chr10:25012815-25013039 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 531-750 |
| Cow position: | chr10:50600193-50600415 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 20, 155 |
| Conread position: | 531-767 |
| Cow position: | chr10:29795168-29794926 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 531-769 |
| Cow position: | chr10:4019450-4019208 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 531-772 |
| Cow position: | chr10:50961913-50961672 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 532-710 |
| Cow position: | chr10:39508622-39508441 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 532-752 |
| Cow position: | chr10:60703069-60703294 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 533-738 |
| Cow position: | chr10:625862-625651 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 533-746 |
| Cow position: | chr10:2738149-2737933 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 141 |
| Conread position: | 533-749 |
| Cow position: | chr10:924161-924384 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 533-842 |
| Cow position: | chr10:1660960-1661276 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 216 |
| Conread position: | 537-769 |
| Cow position: | chr10:5442416-5442649 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 566-749 |
| Cow position: | chr10:10149141-10148957 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 109, 40 |
| Conread position: | 571-779 |
| Cow position: | chr10:28799100-28799314 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 581-749 |
| Cow position: | chr10:17868359-17868523 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 581-781 |
| Cow position: | chr10:11392359-11392161 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 169 |
Show alignments to all cow chromosomes.