Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028O07.5 |
| Conread position: | 426-751 |
| Cow position: | chr11:76002843-76003187 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 446-708 |
| Cow position: | chr11:71033685-71033958 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 446-715 |
| Cow position: | chr11:34609611-34609335 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 446-718 |
| Cow position: | chr11:75925304-75925020 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 446-733 |
| Cow position: | chr11:49248382-49248090 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 446-751 |
| Cow position: | chr11:66605376-66605665 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 446-766 |
| Cow position: | chr11:23272727-23273059 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 446-767 |
| Cow position: | chr11:35761088-35761423 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 116 |
| Conread position: | 446-772 |
| Cow position: | chr11:78361788-78362109 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 446-773 |
| Cow position: | chr11:52310737-52311067 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 82, 164 |
| Conread position: | 446-777 |
| Cow position: | chr11:16650223-16650556 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 446-784 |
| Cow position: | chr11:24030495-24030135 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 235 |
| Conread position: | 446-823 |
| Cow position: | chr11:18926472-18926093 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 447-680 |
| Cow position: | chr11:68414854-68415107 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 453-753 |
| Cow position: | chr11:77437194-77436884 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 480-772 |
| Cow position: | chr11:50701066-50700759 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 511-785 |
| Cow position: | chr11:38735403-38735683 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 247 |
| Conread position: | 530-746 |
| Cow position: | chr11:15437634-15437411 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 531-701 |
| Cow position: | chr11:51131581-51131405 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 531-723 |
| Cow position: | chr11:33816257-33816056 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 531-748 |
| Cow position: | chr11:81652577-81652800 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 531-750 |
| Cow position: | chr11:2643086-2643312 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 531-767 |
| Cow position: | chr11:4692303-4692064 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 531-768 |
| Cow position: | chr11:9960055-9960296 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 216 |
| Conread position: | 531-772 |
| Cow position: | chr11:46032143-46032397 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 533-749 |
| Cow position: | chr11:55423321-55423101 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 533-769 |
| Cow position: | chr11:74750155-74749914 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 232 |
| Conread position: | 534-689 |
| Cow position: | chr11:56106513-56106672 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 536-718 |
| Cow position: | chr11:50267967-50267783 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 536-747 |
| Cow position: | chr11:35630348-35630129 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 536-750 |
| Cow position: | chr11:1765339-1765557 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 566-692 |
| Cow position: | chr11:44622289-44622164 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 566-749 |
| Cow position: | chr11:12349851-12350036 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 65 |
| Conread position: | 566-750 |
| Cow position: | chr11:66570097-66569914 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 566-764 |
| Cow position: | chr11:80287057-80287257 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 566-766 |
| Cow position: | chr11:54327313-54327112 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 109, 129 |
| Conread position: | 566-777 |
| Cow position: | chr11:51225456-51225252 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 570-767 |
| Cow position: | chr11:42195572-42195374 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 171 |
| Conread position: | 579-750 |
| Cow position: | chr11:78680553-78680381 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 106 |
| Conread position: | 579-777 |
| Cow position: | chr11:79741008-79741205 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 19 |
Show alignments to all cow chromosomes.