Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028O07.5 |
| Conread position: | 443-781 |
| Cow position: | chr17:34779865-34779511 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 179 |
| Conread position: | 446-696 |
| Cow position: | chr17:3397835-3398088 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 446-699 |
| Cow position: | chr17:18784390-18784135 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 446-708 |
| Cow position: | chr17:26429147-26429407 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 446-718 |
| Cow position: | chr17:32274726-32274445 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 71, 168 |
| Conread position: | 446-749 |
| Cow position: | chr17:26510031-26510348 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 61, 143 |
| Conread position: | 446-750 |
| Cow position: | chr17:42433839-42433539 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 101, 79 |
| Conread position: | 446-767 |
| Cow position: | chr17:32070772-32070446 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 9 |
| Conread position: | 446-769 |
| Cow position: | chr17:26593004-26592674 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 447-766 |
| Cow position: | chr17:3490604-3490265 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 447-773 |
| Cow position: | chr17:26344032-26344369 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 448-747 |
| Cow position: | chr17:29109703-29110025 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 448-767 |
| Cow position: | chr17:35521216-35521548 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 448-767 |
| Cow position: | chr17:35886386-35886065 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 449-804 |
| Cow position: | chr17:41097721-41098088 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 450-780 |
| Cow position: | chr17:44224363-44224024 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 454-701 |
| Cow position: | chr17:28757648-28757389 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 474-768 |
| Cow position: | chr17:7802041-7802337 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 530-789 |
| Cow position: | chr17:3050083-3049820 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 531-752 |
| Cow position: | chr17:42349780-42350014 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 531-766 |
| Cow position: | chr17:11942145-11941902 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 531-768 |
| Cow position: | chr17:28046445-28046689 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 531-775 |
| Cow position: | chr17:29405205-29404957 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 532-717 |
| Cow position: | chr17:26842630-26842819 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 533-766 |
| Cow position: | chr17:37019102-37018855 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 191 |
| Conread position: | 534-767 |
| Cow position: | chr17:32531095-32531328 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 538-757 |
| Cow position: | chr17:44554140-44554361 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 543-752 |
| Cow position: | chr17:27273346-27273130 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 566-772 |
| Cow position: | chr17:11776446-11776236 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 573-753 |
| Cow position: | chr17:34980999-34980817 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 580-761 |
| Cow position: | chr17:22538913-22539100 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.