Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028O07.5 |
| Conread position: | 429-760 |
| Cow position: | chrX:40517395-40517052 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 433-731 |
| Cow position: | chrX:32803086-32803370 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 238, 63 |
| Conread position: | 443-773 |
| Cow position: | chrX:24888336-24888680 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 444-736 |
| Cow position: | chrX:20970720-20970409 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 68, 171 |
| Conread position: | 446-750 |
| Cow position: | chrX:33004050-33003728 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 446-759 |
| Cow position: | chrX:27105092-27105421 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 214 |
| Conread position: | 446-760 |
| Cow position: | chrX:25045962-25045633 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 244 |
| Conread position: | 446-763 |
| Cow position: | chrX:23514677-23515011 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 446-767 |
| Cow position: | chrX:5808353-5808682 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 446-767 |
| Cow position: | chrX:41762037-41762351 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 446-773 |
| Cow position: | chrX:9439319-9438969 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 446-776 |
| Cow position: | chrX:501792-502133 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 318 |
| Conread position: | 448-709 |
| Cow position: | chrX:19596065-19595784 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 267 |
| Conread position: | 479-750 |
| Cow position: | chrX:36294893-36294611 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 279 |
| Conread position: | 515-749 |
| Cow position: | chrX:27534459-27534698 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 530-721 |
| Cow position: | chrX:37754065-37753875 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 531-689 |
| Cow position: | chrX:1134499-1134335 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 531-738 |
| Cow position: | chrX:17984932-17985141 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 167 |
| Conread position: | 531-750 |
| Cow position: | chrX:1394313-1394088 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 531-750 |
| Cow position: | chrX:13138519-13138740 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 531-752 |
| Cow position: | chrX:18684478-18684253 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 531-768 |
| Cow position: | chrX:39383382-39383623 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 532-709 |
| Cow position: | chrX:40037811-40037631 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 533-750 |
| Cow position: | chrX:11115473-11115693 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 533-830 |
| Cow position: | chrX:25760701-25760997 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 534-767 |
| Cow position: | chrX:18799588-18799825 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 536-690 |
| Cow position: | chrX:40322609-40322450 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 537-767 |
| Cow position: | chrX:389198-388965 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 549-738 |
| Cow position: | chrX:21025360-21025552 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 566-740 |
| Cow position: | chrX:11713893-11713717 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 566-749 |
| Cow position: | chrX:11406341-11406154 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 566-750 |
| Cow position: | chrX:13821529-13821345 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 165 |
| Conread position: | 568-749 |
| Cow position: | chrX:35288315-35288132 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 576-747 |
| Cow position: | chrX:39236683-39236515 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 580-791 |
| Cow position: | chrX:38794143-38793930 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 62 |
| Conread position: | 584-769 |
| Cow position: | chrX:25014782-25014970 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 619-769 |
| Cow position: | chrX:23237930-23237778 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.