Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 43-353 |
| Cow position: | chr11:35335338-35335665 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 73-405 |
| Cow position: | chr11:65237879-65238198 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 249, 19 |
| Conread position: | 90-415 |
| Cow position: | chr11:44156331-44156658 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 101-522 |
| Cow position: | chr11:38834527-38834954 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 317 |
| Conread position: | 118-535 |
| Cow position: | chr11:919869-920285 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 120-317 |
| Cow position: | chr11:30278476-30278284 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 125-444 |
| Cow position: | chr11:65980076-65980396 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 126-513 |
| Cow position: | chr11:28673851-28674234 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 183, 127 |
| Conread position: | 129-307 |
| Cow position: | chr11:61050243-61050068 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 130-278 |
| Cow position: | chr11:8839547-8839694 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 130-414 |
| Cow position: | chr11:29061336-29061612 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 261, 29 |
| Conread position: | 130-418 |
| Cow position: | chr11:44582460-44582749 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 130-440 |
| Cow position: | chr11:54484540-54484848 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 232, 73 |
| Conread position: | 130-447 |
| Cow position: | chr11:81322097-81322407 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 130-498 |
| Cow position: | chr11:16985461-16985817 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 261, 77 |
| Conread position: | 130-519 |
| Cow position: | chr11:31927039-31926656 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 262, 55 |
| Conread position: | 130-540 |
| Cow position: | chr11:29232143-29232547 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 328, 40 |
| Conread position: | 131-418 |
| Cow position: | chr11:36324268-36323996 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 132-430 |
| Cow position: | chr11:23127029-23127322 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 132-542 |
| Cow position: | chr11:15535343-15534948 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 221, 34 |
| Conread position: | 133-541 |
| Cow position: | chr11:45921737-45922147 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 136-292 |
| Cow position: | chr11:52314676-52314831 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 136-329 |
| Cow position: | chr11:23479412-23479220 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 136-413 |
| Cow position: | chr11:15898123-15898399 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 256, 58 |
| Conread position: | 136-444 |
| Cow position: | chr11:15943477-15943788 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 217, 33 |
| Conread position: | 136-486 |
| Cow position: | chr11:66438257-66438604 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 187, 91 |
| Conread position: | 136-538 |
| Cow position: | chr11:2905774-2906175 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 243, 23 |
| Conread position: | 136-538 |
| Cow position: | chr11:44049413-44049018 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 136-538 |
| Cow position: | chr11:53682289-53681879 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 138-418 |
| Cow position: | chr11:12357547-12357830 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 138-419 |
| Cow position: | chr11:28053748-28054026 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 253, 82 |
| Conread position: | 138-428 |
| Cow position: | chr11:58135263-58134969 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 138-430 |
| Cow position: | chr11:44252664-44252370 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 273 |
| Conread position: | 138-436 |
| Cow position: | chr11:41169827-41170130 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-436 |
| Cow position: | chr11:71330462-71330158 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 207 |
| Conread position: | 138-478 |
| Cow position: | chr11:9156281-9156629 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 293 |
| Conread position: | 138-485 |
| Cow position: | chr11:24394180-24393836 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 253, 179 |
| Conread position: | 138-488 |
| Cow position: | chr11:17547029-17546681 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 215, 82 |
| Conread position: | 138-488 |
| Cow position: | chr11:44517998-44518348 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 132, 98 |
| Conread position: | 138-519 |
| Cow position: | chr11:4269535-4269918 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 253, 284 |
| Conread position: | 138-531 |
| Cow position: | chr11:43513764-43514160 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 277 |
| Conread position: | 138-534 |
| Cow position: | chr11:3493855-3493464 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 253, 28 |
| Conread position: | 138-534 |
| Cow position: | chr11:10848317-10847920 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 253, 131 |
| Conread position: | 138-534 |
| Cow position: | chr11:17106816-17107216 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 278 |
| Conread position: | 138-534 |
| Cow position: | chr11:28109004-28108606 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr11:29667739-29668139 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 125, 277 |
| Conread position: | 138-534 |
| Cow position: | chr11:32452694-32452295 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 215, 277 |
| Conread position: | 138-534 |
| Cow position: | chr11:57627186-57627589 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 289 |
| Conread position: | 139-528 |
| Cow position: | chr11:56079116-56078736 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 214, 71 |
| Conread position: | 140-430 |
| Cow position: | chr11:45856400-45856686 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 144-539 |
| Cow position: | chr11:67904594-67904218 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 147-534 |
| Cow position: | chr11:19101637-19102026 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 244, 267 |
| Conread position: | 149-415 |
| Cow position: | chr11:10883163-10882906 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 149-533 |
| Cow position: | chr11:28228910-28229285 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 335, 149 |
| Conread position: | 149-534 |
| Cow position: | chr11:19063216-19063603 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 149-534 |
| Cow position: | chr11:20733380-20733772 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 270 |
| Conread position: | 149-534 |
| Cow position: | chr11:26124071-26124457 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 242, 108 |
| Conread position: | 149-539 |
| Cow position: | chr11:48752410-48752794 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 152-414 |
| Cow position: | chr11:17327214-17326951 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 152-418 |
| Cow position: | chr11:72310181-72310448 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 97 |
| Conread position: | 152-526 |
| Cow position: | chr11:56650643-56650284 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 153-534 |
| Cow position: | chr11:5342067-5342452 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 201, 263 |
| Conread position: | 154-418 |
| Cow position: | chr11:26385672-26385929 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 188, 5 |
| Conread position: | 154-535 |
| Cow position: | chr11:84578545-84578149 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 154-542 |
| Cow position: | chr11:31861752-31861365 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 159-447 |
| Cow position: | chr11:43070482-43070767 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 197, 76 |
| Conread position: | 159-475 |
| Cow position: | chr11:33853377-33853691 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 159-540 |
| Cow position: | chr11:9762904-9763286 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 86, 96 |
| Conread position: | 160-525 |
| Cow position: | chr11:31258642-31258282 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 287, 89 |
| Conread position: | 161-541 |
| Cow position: | chr11:74986757-74986393 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 166-534 |
| Cow position: | chr11:64081244-64081613 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 225, 22 |
| Conread position: | 176-539 |
| Cow position: | chr11:35504594-35504951 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 208, 9 |
| Conread position: | 177-477 |
| Cow position: | chr11:18887685-18887386 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 181-430 |
| Cow position: | chr11:22935916-22935669 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 210, 78 |
| Conread position: | 187-531 |
| Cow position: | chr11:15695721-15696071 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 228 |
| Conread position: | 194-534 |
| Cow position: | chr11:61400255-61400590 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 197, 65 |
| Conread position: | 203-441 |
| Cow position: | chr11:35386714-35386947 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 219-539 |
| Cow position: | chr11:73462499-73462817 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 172, 116 |
| Conread position: | 237-533 |
| Cow position: | chr11:15173228-15172923 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 158, 98 |
Show alignments to all cow chromosomes.