Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 72-346 |
| Cow position: | chr13:47837030-47837309 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 138 |
| Conread position: | 73-300 |
| Cow position: | chr13:21720907-21720650 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 73-539 |
| Cow position: | chr13:38547462-38547931 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 75-535 |
| Cow position: | chr13:47277133-47276691 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 24 |
| Conread position: | 115-539 |
| Cow position: | chr13:39391446-39391859 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 183, 20 |
| Conread position: | 125-390 |
| Cow position: | chr13:14111842-14111590 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 128-843 |
| Cow position: | chr13:5778407-5777682 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 463 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 194, 57 |
| Conread position: | 130-418 |
| Cow position: | chr13:31732946-31733235 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 140, 112 |
| Conread position: | 130-541 |
| Cow position: | chr13:44466859-44467252 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 50 |
| Conread position: | 130-542 |
| Cow position: | chr13:6085328-6085716 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 136-359 |
| Cow position: | chr13:21602644-21602425 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 136-387 |
| Cow position: | chr13:28263112-28262865 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 136-418 |
| Cow position: | chr13:6640344-6640071 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 197, 22 |
| Conread position: | 136-531 |
| Cow position: | chr13:6148160-6147769 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 255, 51 |
| Conread position: | 136-629 |
| Cow position: | chr13:30278550-30278063 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 255, 13 |
| Conread position: | 136-728 |
| Cow position: | chr13:19833016-19832411 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 375 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 282 |
| Conread position: | 137-387 |
| Cow position: | chr13:42202303-42202551 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 138-415 |
| Cow position: | chr13:4484730-4484452 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 100 |
| Conread position: | 138-415 |
| Cow position: | chr13:9045701-9045426 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 138-418 |
| Cow position: | chr13:15519571-15519852 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-418 |
| Cow position: | chr13:15543476-15543195 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-534 |
| Cow position: | chr13:3653384-3653782 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr13:34041403-34041796 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 253, 49 |
| Conread position: | 138-534 |
| Cow position: | chr13:42217977-42218387 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 217, 288 |
| Conread position: | 138-534 |
| Cow position: | chr13:60467262-60466866 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-547 |
| Cow position: | chr13:13900803-13900394 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 253, 130 |
| Conread position: | 139-418 |
| Cow position: | chr13:17330827-17331108 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 145, 244 |
| Conread position: | 139-427 |
| Cow position: | chr13:37798701-37798986 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 139-436 |
| Cow position: | chr13:1592220-1592518 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 252, 275 |
| Conread position: | 139-541 |
| Cow position: | chr13:24632008-24631611 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 139-648 |
| Cow position: | chr13:39627669-39628163 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 248, 210 |
| Conread position: | 149-429 |
| Cow position: | chr13:31611383-31611664 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 246, 120 |
| Conread position: | 149-534 |
| Cow position: | chr13:15923455-15923842 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 241, 265 |
| Conread position: | 152-418 |
| Cow position: | chr13:4942304-4942040 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 152-526 |
| Cow position: | chr13:20925923-20925549 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 152-534 |
| Cow position: | chr13:32984422-32984813 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 195 |
| Conread position: | 152-534 |
| Cow position: | chr13:47229079-47229467 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 266 |
| Conread position: | 152-538 |
| Cow position: | chr13:24101838-24101456 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 153-288 |
| Cow position: | chr13:9544200-9544335 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 157-534 |
| Cow position: | chr13:52645959-52646338 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 234, 257 |
| Conread position: | 158-329 |
| Cow position: | chr13:30276397-30276565 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 158-391 |
| Cow position: | chr13:34019798-34020023 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 181-480 |
| Cow position: | chr13:20967593-20967296 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 155, 143 |
| Conread position: | 182-534 |
| Cow position: | chr13:3056244-3056598 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 209, 232 |
| Conread position: | 186-541 |
| Cow position: | chr13:18452572-18452914 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 206, 53 |
| Conread position: | 187-534 |
| Cow position: | chr13:21839315-21839662 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 166, 70 |
| Conread position: | 187-540 |
| Cow position: | chr13:28670378-28670729 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 203, 56 |
| Conread position: | 188-541 |
| Cow position: | chr13:32155189-32155542 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 145, 158 |
| Conread position: | 195-531 |
| Cow position: | chr13:38077132-38077455 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 205-418 |
| Cow position: | chr13:25952962-25952751 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 186, 137 |
| Conread position: | 273-489 |
| Cow position: | chr13:21720625-21720409 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 352-630 |
| Cow position: | chr13:12734172-12734466 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 533-853 |
| Cow position: | chr13:21720398-21720083 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 858-982 |
| Cow position: | chr13:21719529-21719405 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.