Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 73-537 |
| Cow position: | chr15:7772620-7772162 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 78-534 |
| Cow position: | chr15:28489274-28489734 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 90-438 |
| Cow position: | chr15:16595692-16595342 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 94-410 |
| Cow position: | chr15:22386678-22386992 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 101-522 |
| Cow position: | chr15:35752466-35752892 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 111-466 |
| Cow position: | chr15:18068668-18069017 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 91, 127 |
| Conread position: | 122-418 |
| Cow position: | chr15:21476609-21476905 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 125-519 |
| Cow position: | chr15:6485405-6485017 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 88, 32 |
| Conread position: | 130-254 |
| Cow position: | chr15:34748066-34748191 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 130-430 |
| Cow position: | chr15:49520913-49521207 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 130-440 |
| Cow position: | chr15:4922965-4922654 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 251, 100 |
| Conread position: | 130-446 |
| Cow position: | chr15:814754-815070 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 179, 183 |
| Conread position: | 130-534 |
| Cow position: | chr15:18332008-18332412 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 285 |
| Conread position: | 130-539 |
| Cow position: | chr15:2801128-2801531 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 351, 77 |
| Conread position: | 132-484 |
| Cow position: | chr15:2140305-2140651 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 221, 136 |
| Conread position: | 132-526 |
| Cow position: | chr15:2145691-2145301 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 221, 136 |
| Conread position: | 136-299 |
| Cow position: | chr15:21962681-21962841 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 155, 98 |
| Conread position: | 136-322 |
| Cow position: | chr15:7240401-7240224 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 136-418 |
| Cow position: | chr15:6155130-6155412 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 256, 75 |
| Conread position: | 136-470 |
| Cow position: | chr15:34383071-34383406 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 118, 243 |
| Conread position: | 136-473 |
| Cow position: | chr15:28808257-28807945 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 260, 111 |
| Conread position: | 136-484 |
| Cow position: | chr15:5207703-5207357 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 230 |
| Conread position: | 136-541 |
| Cow position: | chr15:13675310-13674921 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 136-541 |
| Cow position: | chr15:14608841-14609229 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 188, 68 |
| Conread position: | 137-488 |
| Cow position: | chr15:13391252-13391605 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 138-418 |
| Cow position: | chr15:15346301-15346583 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 139, 19 |
| Conread position: | 138-440 |
| Cow position: | chr15:18577524-18577217 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 138-534 |
| Cow position: | chr15:2646843-2647241 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr15:8811212-8811610 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 138-534 |
| Cow position: | chr15:21664931-21665331 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 138-534 |
| Cow position: | chr15:44070740-44070342 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 134, 173 |
| Conread position: | 138-541 |
| Cow position: | chr15:13074816-13074409 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 183, 14 |
| Conread position: | 138-547 |
| Cow position: | chr15:3260508-3260917 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 253, 49 |
| Conread position: | 139-402 |
| Cow position: | chr15:25319739-25320001 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 139-534 |
| Cow position: | chr15:1773308-1772912 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 252, 10 |
| Conread position: | 140-516 |
| Cow position: | chr15:11626496-11626124 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 251, 61 |
| Conread position: | 143-525 |
| Cow position: | chr15:33797707-33798072 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 92 |
| Conread position: | 144-541 |
| Cow position: | chr15:1318252-1317850 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 247, 269 |
| Conread position: | 146-480 |
| Cow position: | chr15:33494439-33494103 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 208 |
| Conread position: | 149-295 |
| Cow position: | chr15:20107770-20107916 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-418 |
| Cow position: | chr15:2077459-2077189 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 149-461 |
| Cow position: | chr15:20441987-20442290 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 184, 141 |
| Conread position: | 149-534 |
| Cow position: | chr15:4197263-4196876 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 242, 264 |
| Conread position: | 149-534 |
| Cow position: | chr15:19737254-19737635 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 149-541 |
| Cow position: | chr15:35834218-35833831 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 37, 136 |
| Conread position: | 154-531 |
| Cow position: | chr15:22240470-22240843 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 106 |
| Conread position: | 159-440 |
| Cow position: | chr15:16346175-16346456 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 192, 138 |
| Conread position: | 159-586 |
| Cow position: | chr15:7850006-7850440 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 163-541 |
| Cow position: | chr15:23310352-23310720 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 190, 17 |
| Conread position: | 181-483 |
| Cow position: | chr15:21948483-21948780 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 210, 49 |
| Conread position: | 188-446 |
| Cow position: | chr15:4386522-4386264 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 203, 226 |
| Conread position: | 194-539 |
| Cow position: | chr15:38658325-38657969 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 146, 93 |
| Conread position: | 239-538 |
| Cow position: | chr15:42456921-42457223 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 169 |
Show alignments to all cow chromosomes.