Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 39-483 |
| Cow position: | chr16:23721069-23721507 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 115-541 |
| Cow position: | chr16:12714675-12715091 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 126-436 |
| Cow position: | chr16:7675978-7676287 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 265, 31 |
| Conread position: | 126-531 |
| Cow position: | chr16:8815624-8816032 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 146, 289 |
| Conread position: | 126-534 |
| Cow position: | chr16:23251957-23252363 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 265, 131 |
| Conread position: | 129-534 |
| Cow position: | chr16:25189125-25188719 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 262, 65 |
| Conread position: | 130-539 |
| Cow position: | chr16:42060453-42060842 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 229, 22 |
| Conread position: | 136-317 |
| Cow position: | chr16:38540472-38540655 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 136-418 |
| Cow position: | chr16:52410320-52410599 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 136-422 |
| Cow position: | chr16:33013166-33012885 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 136-456 |
| Cow position: | chr16:54727054-54726740 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 136-458 |
| Cow position: | chr16:52888376-52888059 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 136-536 |
| Cow position: | chr16:54697201-54696779 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 88, 127 |
| Conread position: | 136-541 |
| Cow position: | chr16:36579334-36579741 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 67 |
| Conread position: | 136-543 |
| Cow position: | chr16:49279903-49279505 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 225, 49 |
| Conread position: | 138-415 |
| Cow position: | chr16:15567724-15567445 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-418 |
| Cow position: | chr16:15185540-15185260 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 253, 131 |
| Conread position: | 138-490 |
| Cow position: | chr16:23983764-23983412 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 119 |
| Conread position: | 138-516 |
| Cow position: | chr16:23535422-23535802 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 215, 202 |
| Conread position: | 138-522 |
| Cow position: | chr16:31591448-31591836 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 138-534 |
| Cow position: | chr16:40295706-40296105 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 132, 204 |
| Conread position: | 138-534 |
| Cow position: | chr16:43896806-43897204 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 132, 277 |
| Conread position: | 138-538 |
| Cow position: | chr16:26664221-26663817 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 132, 278 |
| Conread position: | 138-547 |
| Cow position: | chr16:14665341-14665754 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 139-428 |
| Cow position: | chr16:15493971-15493680 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 139-430 |
| Cow position: | chr16:26978606-26978315 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 185, 10 |
| Conread position: | 139-447 |
| Cow position: | chr16:36087944-36088250 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 212, 118 |
| Conread position: | 139-534 |
| Cow position: | chr16:1432658-1432258 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 162, 118 |
| Conread position: | 139-542 |
| Cow position: | chr16:1822466-1822086 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 347, 53 |
| Conread position: | 142-630 |
| Cow position: | chr16:27786503-27786028 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 30 |
| Conread position: | 145-418 |
| Cow position: | chr16:2410504-2410778 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 145-534 |
| Cow position: | chr16:1566991-1567381 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 246, 220 |
| Conread position: | 149-428 |
| Cow position: | chr16:2482679-2482962 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 149-453 |
| Cow position: | chr16:3088744-3089048 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 212, 266 |
| Conread position: | 149-534 |
| Cow position: | chr16:25442088-25441698 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 268 |
| Conread position: | 152-360 |
| Cow position: | chr16:36160920-36160708 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 152-415 |
| Cow position: | chr16:406585-406848 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 239, 42 |
| Conread position: | 152-418 |
| Cow position: | chr16:15477295-15477029 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 239, 42 |
| Conread position: | 152-418 |
| Cow position: | chr16:41755005-41755270 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 36, 108 |
| Conread position: | 152-541 |
| Cow position: | chr16:21810217-21809839 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 240, 26 |
| Conread position: | 154-533 |
| Cow position: | chr16:5485183-5484803 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 237, 115 |
| Conread position: | 154-534 |
| Cow position: | chr16:28169907-28170300 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 271 |
| Conread position: | 178-390 |
| Cow position: | chr16:36789163-36788953 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 57 |
| Conread position: | 182-436 |
| Cow position: | chr16:12537503-12537757 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 209, 16 |
| Conread position: | 189-456 |
| Cow position: | chr16:15526291-15526026 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 164, 146 |
| Conread position: | 194-490 |
| Cow position: | chr16:10116524-10116809 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 202, 11 |
| Conread position: | 194-522 |
| Cow position: | chr16:25342382-25342052 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 209-541 |
| Cow position: | chr16:16014732-16015058 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 186, 51 |
Show alignments to all cow chromosomes.