Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 43-389 |
| Cow position: | chr18:44403052-44402701 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 72-527 |
| Cow position: | chr18:8644280-8643843 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 72-530 |
| Cow position: | chr18:18842283-18842741 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 77-418 |
| Cow position: | chr18:22323496-22323151 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 164 |
| Conread position: | 87-541 |
| Cow position: | chr18:23448558-23449017 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 111-516 |
| Cow position: | chr18:42062666-42062270 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 273, 107 |
| Conread position: | 111-523 |
| Cow position: | chr18:32839095-32838699 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 125-418 |
| Cow position: | chr18:27837047-27837341 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 126-534 |
| Cow position: | chr18:23798908-23798501 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 265, 21 |
| Conread position: | 130-416 |
| Cow position: | chr18:20235091-20235351 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 130-471 |
| Cow position: | chr18:19353618-19353277 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 285 |
| Conread position: | 130-547 |
| Cow position: | chr18:52652167-52651751 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 261, 130 |
| Conread position: | 135-415 |
| Cow position: | chr18:8594940-8595216 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 261, 14 |
| Conread position: | 136-385 |
| Cow position: | chr18:29407191-29407439 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 173, 179 |
| Conread position: | 136-434 |
| Cow position: | chr18:10648670-10648383 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 255, 34 |
| Conread position: | 136-519 |
| Cow position: | chr18:29074239-29073866 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 136-533 |
| Cow position: | chr18:19471024-19470629 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 138-418 |
| Cow position: | chr18:36509592-36509308 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 215, 202 |
| Conread position: | 138-418 |
| Cow position: | chr18:37507207-37506930 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 253, 111 |
| Conread position: | 138-428 |
| Cow position: | chr18:40479643-40479347 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 135, 272 |
| Conread position: | 138-534 |
| Cow position: | chr18:14131643-14131245 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr18:51342936-51342538 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 132, 277 |
| Conread position: | 138-544 |
| Cow position: | chr18:14417229-14416827 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 253, 112 |
| Conread position: | 138-547 |
| Cow position: | chr18:41839563-41839969 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 247, 41 |
| Conread position: | 138-593 |
| Cow position: | chr18:16089386-16088933 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 253, 183 |
| Conread position: | 139-477 |
| Cow position: | chr18:17197163-17197500 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 275 |
| Conread position: | 140-445 |
| Cow position: | chr18:5679793-5679496 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 140-447 |
| Cow position: | chr18:39741622-39741326 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 255, 121 |
| Conread position: | 140-541 |
| Cow position: | chr18:25961170-25961575 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 141-483 |
| Cow position: | chr18:35313617-35313280 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 250, 52 |
| Conread position: | 147-415 |
| Cow position: | chr18:51239530-51239258 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 149-363 |
| Cow position: | chr18:30615309-30615099 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 149-534 |
| Cow position: | chr18:32653457-32653069 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 266 |
| Conread position: | 149-538 |
| Cow position: | chr18:28972646-28973036 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 242, 45 |
| Conread position: | 149-547 |
| Cow position: | chr18:16175377-16175775 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 242, 265 |
| Conread position: | 152-406 |
| Cow position: | chr18:37335520-37335269 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 152-418 |
| Cow position: | chr18:15850661-15850405 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 239, 7 |
| Conread position: | 152-486 |
| Cow position: | chr18:54004936-54005269 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 204, 188 |
| Conread position: | 152-488 |
| Cow position: | chr18:47742738-47742405 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 239, 218 |
| Conread position: | 158-480 |
| Cow position: | chr18:157262-156949 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 158-539 |
| Cow position: | chr18:2474943-2475316 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 159-695 |
| Cow position: | chr18:14421361-14420806 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 160-414 |
| Cow position: | chr18:13357418-13357176 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 160-477 |
| Cow position: | chr18:16869646-16869339 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 171-531 |
| Cow position: | chr18:21533115-21533471 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 101 |
| Conread position: | 172-445 |
| Cow position: | chr18:37782613-37782884 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 177-551 |
| Cow position: | chr18:25364411-25364039 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 214, 51 |
| Conread position: | 183-412 |
| Cow position: | chr18:29745912-29746149 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 22 |
| Conread position: | 187-367 |
| Cow position: | chr18:34042656-34042478 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 187-529 |
| Cow position: | chr18:35799818-35800148 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 200, 18 |
| Conread position: | 222-444 |
| Cow position: | chr18:23126214-23126439 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 237-709 |
| Cow position: | chr18:51275893-51276366 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 154, 16 |
Show alignments to all cow chromosomes.