Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 72-493 |
| Cow position: | chr2:58795611-58796027 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 73-438 |
| Cow position: | chr2:541428-541780 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 79-333 |
| Cow position: | chr2:26156750-26157009 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 102-534 |
| Cow position: | chr2:43961431-43960995 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 32, 162 |
| Conread position: | 123-538 |
| Cow position: | chr2:2042089-2041683 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 126-541 |
| Cow position: | chr2:31899391-31899803 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 126-633 |
| Cow position: | chr2:40827825-40827311 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 211 |
| Conread position: | 129-440 |
| Cow position: | chr2:38801093-38801397 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 238, 37 |
| Conread position: | 130-560 |
| Cow position: | chr2:39933785-39933366 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 173, 35 |
| Conread position: | 131-429 |
| Cow position: | chr2:12516488-12516776 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 261, 76 |
| Conread position: | 132-534 |
| Cow position: | chr2:32065377-32065783 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 8, 116 |
| Conread position: | 133-519 |
| Cow position: | chr2:289082-289466 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 226, 52 |
| Conread position: | 136-419 |
| Cow position: | chr2:44993473-44993194 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 136-434 |
| Cow position: | chr2:26757575-26757873 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 255, 12 |
| Conread position: | 136-434 |
| Cow position: | chr2:36195646-36195937 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 136-474 |
| Cow position: | chr2:55478792-55479130 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 136-538 |
| Cow position: | chr2:69140630-69140230 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 66 |
| Conread position: | 136-584 |
| Cow position: | chr2:6148569-6148124 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 136 |
| Conread position: | 138-303 |
| Cow position: | chr2:6751009-6751174 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 62 |
| Conread position: | 138-418 |
| Cow position: | chr2:10185533-10185810 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 256, 98 |
| Conread position: | 138-418 |
| Cow position: | chr2:24925260-24924977 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 171, 137 |
| Conread position: | 138-418 |
| Cow position: | chr2:42670010-42670291 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 125, 100 |
| Conread position: | 138-421 |
| Cow position: | chr2:5869686-5869976 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 138-522 |
| Cow position: | chr2:28648907-28649288 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 253, 33 |
| Conread position: | 138-532 |
| Cow position: | chr2:9958372-9958771 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 139, 289 |
| Conread position: | 138-534 |
| Cow position: | chr2:2355745-2356143 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 254, 276 |
| Conread position: | 138-534 |
| Cow position: | chr2:9908609-9908211 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 253, 277 |
| Conread position: | 138-534 |
| Cow position: | chr2:16900954-16900550 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 132, 282 |
| Conread position: | 138-534 |
| Cow position: | chr2:28793942-28793545 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 230, 33 |
| Conread position: | 138-534 |
| Cow position: | chr2:36981076-36980678 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 175 |
| Conread position: | 138-534 |
| Cow position: | chr2:39422319-39421920 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 138-534 |
| Cow position: | chr2:41657871-41657473 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 138-534 |
| Cow position: | chr2:52617170-52616769 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 139, 205 |
| Conread position: | 138-547 |
| Cow position: | chr2:11158427-11158834 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 254, 138 |
| Conread position: | 138-696 |
| Cow position: | chr2:13045018-13045608 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 211, 228 |
| Conread position: | 139-428 |
| Cow position: | chr2:19012048-19011749 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 131 |
| Conread position: | 139-440 |
| Cow position: | chr2:53330456-53330151 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 139-538 |
| Cow position: | chr2:64224046-64224437 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 153, 26 |
| Conread position: | 139-540 |
| Cow position: | chr2:84614254-84614637 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 139-541 |
| Cow position: | chr2:43676542-43676154 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 140-620 |
| Cow position: | chr2:13124266-13124718 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 255, 53 |
| Conread position: | 144-415 |
| Cow position: | chr2:84920450-84920177 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 12, 172 |
| Conread position: | 145-441 |
| Cow position: | chr2:740274-740566 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 148-534 |
| Cow position: | chr2:46931797-46932184 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 149-419 |
| Cow position: | chr2:10267976-10268244 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 242, 168 |
| Conread position: | 149-534 |
| Cow position: | chr2:3323877-3324262 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 242, 191 |
| Conread position: | 152-418 |
| Cow position: | chr2:81257849-81257585 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 152-541 |
| Cow position: | chr2:41052967-41053351 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 152-542 |
| Cow position: | chr2:23984745-23985134 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 153-360 |
| Cow position: | chr2:74470303-74470509 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 153-449 |
| Cow position: | chr2:25715863-25715574 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 154-418 |
| Cow position: | chr2:8119221-8118956 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 154-488 |
| Cow position: | chr2:22322850-22322520 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 160-534 |
| Cow position: | chr2:4402479-4402860 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 259 |
| Conread position: | 160-534 |
| Cow position: | chr2:5903645-5904021 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 231, 262 |
| Conread position: | 171-516 |
| Cow position: | chr2:66307444-66307793 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 244 |
| Conread position: | 174-618 |
| Cow position: | chr2:3970647-3970223 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 166, 150 |
| Conread position: | 178-546 |
| Cow position: | chr2:6976296-6976660 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 217, 70 |
| Conread position: | 181-534 |
| Cow position: | chr2:10610983-10611338 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 194-489 |
| Cow position: | chr2:78763302-78762996 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 194-519 |
| Cow position: | chr2:3789204-3789528 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 198, 185 |
| Conread position: | 194-534 |
| Cow position: | chr2:364417-364761 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 222 |
| Conread position: | 257-726 |
| Cow position: | chr2:19251747-19251265 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 42 |
Show alignments to all cow chromosomes.