Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 73-484 |
| Cow position: | chr21:34041847-34041428 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 118 |
| Conread position: | 73-676 |
| Cow position: | chr21:42962032-42962648 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 405 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 18, 159 |
| Conread position: | 94-728 |
| Cow position: | chr21:23943411-23944046 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 125-418 |
| Cow position: | chr21:3780109-3779814 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 126-390 |
| Cow position: | chr21:14497891-14498155 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 161, 88 |
| Conread position: | 127-541 |
| Cow position: | chr21:32440458-32440051 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 165 |
| Conread position: | 130-534 |
| Cow position: | chr21:25782972-25782573 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 135-541 |
| Cow position: | chr21:39436039-39436441 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 136-440 |
| Cow position: | chr21:2901083-2900774 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 136-478 |
| Cow position: | chr21:45491378-45491038 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 136-533 |
| Cow position: | chr21:37372566-37372168 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 255, 99 |
| Conread position: | 136-853 |
| Cow position: | chr21:31976755-31976059 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 442 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 232, 45 |
| Conread position: | 138-307 |
| Cow position: | chr21:35774271-35774102 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-411 |
| Cow position: | chr21:2673678-2673953 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 138-414 |
| Cow position: | chr21:33253508-33253235 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 253, 202 |
| Conread position: | 138-415 |
| Cow position: | chr21:1193081-1192807 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 253, 97 |
| Conread position: | 138-415 |
| Cow position: | chr21:40270346-40270625 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 138-436 |
| Cow position: | chr21:10851412-10851108 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 138-488 |
| Cow position: | chr21:2512173-2511820 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 90 |
| Conread position: | 138-529 |
| Cow position: | chr21:37936152-37935760 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr21:35145085-35144692 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 139-465 |
| Cow position: | chr21:13086400-13086083 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 194, 207 |
| Conread position: | 139-541 |
| Cow position: | chr21:28025778-28025394 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 140-338 |
| Cow position: | chr21:5235808-5235614 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 140-541 |
| Cow position: | chr21:37795393-37794991 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 147, 9 |
| Conread position: | 145-415 |
| Cow position: | chr21:5018435-5018160 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 146-539 |
| Cow position: | chr21:38011451-38011049 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 146-747 |
| Cow position: | chr21:46170544-46169940 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 372 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 85, 182 |
| Conread position: | 148-403 |
| Cow position: | chr21:4405065-4404810 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 148-541 |
| Cow position: | chr21:11449387-11449771 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 149-544 |
| Cow position: | chr21:2882420-2882818 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 121, 266 |
| Conread position: | 152-418 |
| Cow position: | chr21:5839951-5840217 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 239, 106 |
| Conread position: | 152-418 |
| Cow position: | chr21:30598168-30598428 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 239, 59 |
| Conread position: | 152-468 |
| Cow position: | chr21:16693536-16693229 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 239, 29 |
| Conread position: | 157-534 |
| Cow position: | chr21:37046929-37046552 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 119, 96 |
| Conread position: | 179-480 |
| Cow position: | chr21:406040-406347 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 129 |
| Conread position: | 182-622 |
| Cow position: | chr21:38028246-38027814 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 151, 12 |
| Conread position: | 193-541 |
| Cow position: | chr21:12723725-12723374 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 194-534 |
| Cow position: | chr21:12054736-12055072 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 82 |
Show alignments to all cow chromosomes.