Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 74-447 |
| Cow position: | chr28:28750269-28749912 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 261 |
| Conread position: | 94-390 |
| Cow position: | chr28:27678802-27678500 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 190 |
| Conread position: | 130-292 |
| Cow position: | chr28:9584883-9584721 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 130-418 |
| Cow position: | chr28:1166669-1166955 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 261, 106 |
| Conread position: | 130-522 |
| Cow position: | chr28:22259941-22260335 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 261, 284 |
| Conread position: | 130-534 |
| Cow position: | chr28:6538054-6538459 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 351, 283 |
| Conread position: | 130-540 |
| Cow position: | chr28:33959567-33959974 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 133-534 |
| Cow position: | chr28:5938692-5938289 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 135-319 |
| Cow position: | chr28:34565252-34565075 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 135-434 |
| Cow position: | chr28:34314171-34313872 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 136-330 |
| Cow position: | chr28:29499085-29499282 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 136-441 |
| Cow position: | chr28:9269055-9268756 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 136-457 |
| Cow position: | chr28:28440016-28439700 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 136-544 |
| Cow position: | chr28:7003201-7002790 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 279 |
| Conread position: | 138-415 |
| Cow position: | chr28:10580887-10581166 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 138-418 |
| Cow position: | chr28:1506069-1505788 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-418 |
| Cow position: | chr28:5750505-5750786 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 138-418 |
| Cow position: | chr28:26425052-26425334 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 138-433 |
| Cow position: | chr28:12409033-12409328 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 253, 21 |
| Conread position: | 138-453 |
| Cow position: | chr28:29821198-29820884 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-519 |
| Cow position: | chr28:12151509-12151125 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 132, 239 |
| Conread position: | 138-534 |
| Cow position: | chr28:14704185-14704583 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 254, 276 |
| Conread position: | 138-696 |
| Cow position: | chr28:7741644-7741078 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 353 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 253, 73 |
| Conread position: | 146-542 |
| Cow position: | chr28:24541280-24540892 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 210, 32 |
| Conread position: | 149-329 |
| Cow position: | chr28:523480-523303 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 149-415 |
| Cow position: | chr28:1216959-1217232 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 149-429 |
| Cow position: | chr28:2193638-2193903 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 191, 54 |
| Conread position: | 149-434 |
| Cow position: | chr28:18519257-18519543 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 121, 274 |
| Conread position: | 149-516 |
| Cow position: | chr28:32791187-32791553 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 242, 87 |
| Conread position: | 149-522 |
| Cow position: | chr28:5803230-5802858 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 104 |
| Conread position: | 149-534 |
| Cow position: | chr28:1813671-1814059 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 152-418 |
| Cow position: | chr28:5113109-5113375 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 239, 117 |
| Conread position: | 152-544 |
| Cow position: | chr28:17666118-17666507 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 240, 262 |
| Conread position: | 153-418 |
| Cow position: | chr28:3191068-3191334 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 154-534 |
| Cow position: | chr28:8380250-8379861 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 268 |
| Conread position: | 157-519 |
| Cow position: | chr28:12179896-12180252 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 165-418 |
| Cow position: | chr28:8644776-8644520 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 174-489 |
| Cow position: | chr28:13239540-13239248 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 179, 29 |
| Conread position: | 193-427 |
| Cow position: | chr28:22064247-22064481 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 194-534 |
| Cow position: | chr28:9179771-9179431 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 197, 75 |
| Conread position: | 194-534 |
| Cow position: | chr28:24883827-24884173 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 238-534 |
| Cow position: | chr28:29843098-29843397 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 173, 164 |
Show alignments to all cow chromosomes.