Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 101-338 |
| Cow position: | chr29:34525448-34525209 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 116-515 |
| Cow position: | chr29:2101043-2100637 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 182 |
| Conread position: | 125-412 |
| Cow position: | chr29:40501803-40502088 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 266, 105 |
| Conread position: | 125-418 |
| Cow position: | chr29:25931350-25931654 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 128-416 |
| Cow position: | chr29:43323735-43323446 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 130-418 |
| Cow position: | chr29:14210394-14210682 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 261, 142 |
| Conread position: | 132-413 |
| Cow position: | chr29:13572979-13573259 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 132-487 |
| Cow position: | chr29:39369036-39368694 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 136-412 |
| Cow position: | chr29:8774147-8774416 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 136-415 |
| Cow position: | chr29:42148213-42147939 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 255, 42 |
| Conread position: | 137-534 |
| Cow position: | chr29:38228139-38227748 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 254, 15 |
| Conread position: | 138-368 |
| Cow position: | chr29:16023737-16023507 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 215, 202 |
| Conread position: | 138-415 |
| Cow position: | chr29:10647082-10647360 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 215, 202 |
| Conread position: | 138-415 |
| Cow position: | chr29:23977290-23977010 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 138-418 |
| Cow position: | chr29:7430051-7430332 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-418 |
| Cow position: | chr29:34798642-34798923 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-459 |
| Cow position: | chr29:30462277-30461969 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 215, 33 |
| Conread position: | 138-534 |
| Cow position: | chr29:18855783-18856179 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 138-534 |
| Cow position: | chr29:20252334-20251934 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 132, 278 |
| Conread position: | 138-534 |
| Cow position: | chr29:32541262-32540864 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 142, 277 |
| Conread position: | 138-534 |
| Cow position: | chr29:35814808-35815206 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-544 |
| Cow position: | chr29:6265100-6265515 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 132, 283 |
| Conread position: | 138-701 |
| Cow position: | chr29:19622115-19622679 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 203 |
| Conread position: | 140-444 |
| Cow position: | chr29:45586216-45586518 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 251, 116 |
| Conread position: | 140-481 |
| Cow position: | chr29:41051473-41051803 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 145-405 |
| Cow position: | chr29:38237362-38237626 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 145-622 |
| Cow position: | chr29:31870133-31870604 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 208, 127 |
| Conread position: | 146-627 |
| Cow position: | chr29:4339685-4339199 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 149-415 |
| Cow position: | chr29:26163677-26163940 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 149-444 |
| Cow position: | chr29:14587077-14586783 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 149-456 |
| Cow position: | chr29:27979768-27980074 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 243, 265 |
| Conread position: | 149-533 |
| Cow position: | chr29:14040860-14041240 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 136 |
| Conread position: | 149-534 |
| Cow position: | chr29:31182560-31182173 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 210, 167 |
| Conread position: | 149-544 |
| Cow position: | chr29:39078548-39078946 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 266 |
| Conread position: | 152-415 |
| Cow position: | chr29:19654781-19654518 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 239, 117 |
| Conread position: | 152-438 |
| Cow position: | chr29:41768252-41767983 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 152-541 |
| Cow position: | chr29:34585511-34585142 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 239, 41 |
| Conread position: | 152-597 |
| Cow position: | chr29:37165287-37164839 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 188, 120 |
| Conread position: | 157-415 |
| Cow position: | chr29:43487551-43487291 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 159-431 |
| Cow position: | chr29:44145314-44145042 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 118, 46 |
| Conread position: | 161-629 |
| Cow position: | chr29:33140139-33139670 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 227, 74 |
| Conread position: | 162-516 |
| Cow position: | chr29:28576237-28576580 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 229, 51 |
| Conread position: | 180-555 |
| Cow position: | chr29:13855936-13856308 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 211, 104 |
| Conread position: | 182-456 |
| Cow position: | chr29:13920489-13920763 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 177, 233 |
| Conread position: | 194-537 |
| Cow position: | chr29:668947-669292 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 221-498 |
| Cow position: | chr29:19480337-19480064 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 59 |
Show alignments to all cow chromosomes.