Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 63-592 |
| Cow position: | chr3:56398334-56397811 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 69-425 |
| Cow position: | chr3:37035914-37035561 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 72-438 |
| Cow position: | chr3:22962022-22961672 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 160, 56 |
| Conread position: | 75-539 |
| Cow position: | chr3:15806687-15806216 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 252 |
| Conread position: | 78-540 |
| Cow position: | chr3:79117315-79116866 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 86-295 |
| Cow position: | chr3:8975233-8975022 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 102-385 |
| Cow position: | chr3:35357556-35357275 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 123-533 |
| Cow position: | chr3:51508531-51508940 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 230, 217 |
| Conread position: | 124-416 |
| Cow position: | chr3:82638201-82637912 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 125-342 |
| Cow position: | chr3:55892508-55892289 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 125-542 |
| Cow position: | chr3:79318789-79318378 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 266, 88 |
| Conread position: | 126-534 |
| Cow position: | chr3:29579718-29579311 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 129-488 |
| Cow position: | chr3:6783455-6783102 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 131-542 |
| Cow position: | chr3:14237238-14237655 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 133-469 |
| Cow position: | chr3:63002456-63002791 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 200, 54 |
| Conread position: | 133-541 |
| Cow position: | chr3:57537622-57537222 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 229 |
| Conread position: | 135-541 |
| Cow position: | chr3:28300786-28300391 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 260, 31 |
| Conread position: | 136-483 |
| Cow position: | chr3:11541822-11541477 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 136-538 |
| Cow position: | chr3:11303991-11303586 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 173, 274 |
| Conread position: | 137-441 |
| Cow position: | chr3:79431624-79431925 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 254, 64 |
| Conread position: | 137-538 |
| Cow position: | chr3:4667183-4666782 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 138-415 |
| Cow position: | chr3:57483649-57483925 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 253, 130 |
| Conread position: | 138-418 |
| Cow position: | chr3:2709789-2710067 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 253, 111 |
| Conread position: | 138-428 |
| Cow position: | chr3:59862459-59862163 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 138-436 |
| Cow position: | chr3:40824471-40824172 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-522 |
| Cow position: | chr3:21181616-21182004 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 278 |
| Conread position: | 138-531 |
| Cow position: | chr3:30315639-30315251 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 253, 161 |
| Conread position: | 138-533 |
| Cow position: | chr3:47080332-47080727 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 120 |
| Conread position: | 138-534 |
| Cow position: | chr3:4287167-4286769 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 138, 121 |
| Conread position: | 138-534 |
| Cow position: | chr3:7170281-7169893 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 253, 56 |
| Conread position: | 138-534 |
| Cow position: | chr3:18860495-18860097 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 253, 284 |
| Conread position: | 138-534 |
| Cow position: | chr3:19800094-19800492 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 254, 276 |
| Conread position: | 138-534 |
| Cow position: | chr3:48843332-48842934 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 253, 31 |
| Conread position: | 138-534 |
| Cow position: | chr3:49544127-49544526 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 125, 193 |
| Conread position: | 138-534 |
| Cow position: | chr3:63915033-63915431 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-547 |
| Cow position: | chr3:10240741-10240334 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 278 |
| Conread position: | 139-418 |
| Cow position: | chr3:57559530-57559260 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 139-527 |
| Cow position: | chr3:15720794-15720415 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 18 |
| Conread position: | 139-539 |
| Cow position: | chr3:39661767-39662151 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 139-541 |
| Cow position: | chr3:7313875-7314277 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 139-728 |
| Cow position: | chr3:35476235-35476842 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 74 |
| Conread position: | 140-537 |
| Cow position: | chr3:58166166-58165767 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 242 |
| Conread position: | 143-404 |
| Cow position: | chr3:60263943-60264201 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 249, 158 |
| Conread position: | 144-333 |
| Cow position: | chr3:61117951-61118136 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 145-534 |
| Cow position: | chr3:18541066-18541456 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 246, 269 |
| Conread position: | 149-418 |
| Cow position: | chr3:18812571-18812307 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 149-483 |
| Cow position: | chr3:20682058-20682387 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 246, 9 |
| Conread position: | 149-534 |
| Cow position: | chr3:7157653-7158040 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 242, 264 |
| Conread position: | 149-534 |
| Cow position: | chr3:23289260-23289650 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 194 |
| Conread position: | 149-534 |
| Cow position: | chr3:36863391-36863774 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 104 |
| Conread position: | 149-534 |
| Cow position: | chr3:47177201-47177587 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 242, 265 |
| Conread position: | 149-534 |
| Cow position: | chr3:57753867-57753480 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 242, 265 |
| Conread position: | 149-534 |
| Cow position: | chr3:64651704-64651313 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 184, 278 |
| Conread position: | 149-587 |
| Cow position: | chr3:76381440-76381870 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 150-486 |
| Cow position: | chr3:56339346-56339684 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 152-415 |
| Cow position: | chr3:24445009-24445277 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 152-496 |
| Cow position: | chr3:30617856-30618200 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 263 |
| Conread position: | 152-534 |
| Cow position: | chr3:27919491-27919107 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 239, 262 |
| Conread position: | 152-534 |
| Cow position: | chr3:75040093-75040476 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 239, 117 |
| Conread position: | 153-547 |
| Cow position: | chr3:48058290-48058683 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 238, 119 |
| Conread position: | 154-534 |
| Cow position: | chr3:37970108-37969726 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 237, 260 |
| Conread position: | 154-534 |
| Cow position: | chr3:66621245-66620868 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 154-535 |
| Cow position: | chr3:40346148-40345766 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 159-489 |
| Cow position: | chr3:16899305-16899633 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 159-546 |
| Cow position: | chr3:10095488-10095101 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 232, 61 |
| Conread position: | 165-534 |
| Cow position: | chr3:20381597-20381227 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 226, 13 |
| Conread position: | 172-477 |
| Cow position: | chr3:68303489-68303785 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 174-541 |
| Cow position: | chr3:74226376-74226724 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 243, 29 |
| Conread position: | 185-418 |
| Cow position: | chr3:78026385-78026618 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 206, 115 |
| Conread position: | 187-438 |
| Cow position: | chr3:46922709-46922958 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 204, 147 |
| Conread position: | 189-539 |
| Cow position: | chr3:36727465-36727118 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 194-534 |
| Cow position: | chr3:19879680-19879339 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 194-534 |
| Cow position: | chr3:29330255-29330597 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 194-534 |
| Cow position: | chr3:72631100-72630760 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 197, 227 |
| Conread position: | 236-506 |
| Cow position: | chr3:62733252-62732982 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 155, 55 |
| Conread position: | 252-710 |
| Cow position: | chr3:56140288-56139825 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 45 |
Show alignments to all cow chromosomes.