Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 49-417 |
| Cow position: | chr6:43377087-43376721 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 101-515 |
| Cow position: | chr6:4258590-4259000 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 120-489 |
| Cow position: | chr6:39019660-39020004 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 126-415 |
| Cow position: | chr6:15140040-15140334 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 129-418 |
| Cow position: | chr6:11871512-11871801 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 262, 223 |
| Conread position: | 129-534 |
| Cow position: | chr6:3150397-3149991 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 155 |
| Conread position: | 130-405 |
| Cow position: | chr6:55542131-55542408 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 130-522 |
| Cow position: | chr6:39333736-39334130 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 261, 284 |
| Conread position: | 136-438 |
| Cow position: | chr6:32448783-32449082 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 251, 93 |
| Conread position: | 136-489 |
| Cow position: | chr6:65833368-65833725 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 136-510 |
| Cow position: | chr6:64281935-64282305 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 195, 185 |
| Conread position: | 136-531 |
| Cow position: | chr6:28170028-28169634 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 255, 61 |
| Conread position: | 136-538 |
| Cow position: | chr6:20648948-20649340 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 137-534 |
| Cow position: | chr6:44032915-44032520 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 138-409 |
| Cow position: | chr6:54415496-54415228 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 215, 180 |
| Conread position: | 138-415 |
| Cow position: | chr6:40553449-40553729 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-418 |
| Cow position: | chr6:8760170-8760446 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 215, 76 |
| Conread position: | 138-418 |
| Cow position: | chr6:15278689-15278967 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 253, 86 |
| Conread position: | 138-418 |
| Cow position: | chr6:24240177-24239902 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 253, 41 |
| Conread position: | 138-418 |
| Cow position: | chr6:36527426-36527145 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 129, 273 |
| Conread position: | 138-418 |
| Cow position: | chr6:40866199-40866473 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 254, 202 |
| Conread position: | 138-421 |
| Cow position: | chr6:44905605-44905330 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 237, 19 |
| Conread position: | 138-428 |
| Cow position: | chr6:3276247-3276541 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-433 |
| Cow position: | chr6:17047178-17046880 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 138-436 |
| Cow position: | chr6:58027799-58027499 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 120 |
| Conread position: | 138-479 |
| Cow position: | chr6:50646059-50646399 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-519 |
| Cow position: | chr6:58601608-58601223 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 138-522 |
| Cow position: | chr6:27528872-27529265 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 60 |
| Conread position: | 138-530 |
| Cow position: | chr6:1404461-1404861 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 195, 282 |
| Conread position: | 138-533 |
| Cow position: | chr6:1410527-1410930 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 195, 282 |
| Conread position: | 138-534 |
| Cow position: | chr6:13105185-13104785 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 229 |
| Conread position: | 138-534 |
| Cow position: | chr6:20559978-20560379 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 232, 131 |
| Conread position: | 138-534 |
| Cow position: | chr6:51087066-51086670 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 253, 76 |
| Conread position: | 138-534 |
| Cow position: | chr6:65820848-65821246 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 253, 284 |
| Conread position: | 138-544 |
| Cow position: | chr6:39438890-39438483 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 139-534 |
| Cow position: | chr6:34891000-34891397 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 252, 275 |
| Conread position: | 140-419 |
| Cow position: | chr6:26497426-26497696 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 140-540 |
| Cow position: | chr6:34784562-34784955 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 161 |
| Conread position: | 142-418 |
| Cow position: | chr6:2953092-2953364 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 145-488 |
| Cow position: | chr6:46573489-46573831 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 246, 269 |
| Conread position: | 145-489 |
| Cow position: | chr6:11444291-11444635 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 249, 97 |
| Conread position: | 149-415 |
| Cow position: | chr6:41190433-41190166 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 149-453 |
| Cow position: | chr6:703331-703028 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 188 |
| Conread position: | 149-524 |
| Cow position: | chr6:39910448-39910077 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 242, 265 |
| Conread position: | 149-544 |
| Cow position: | chr6:8203299-8202900 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 267 |
| Conread position: | 151-534 |
| Cow position: | chr6:13848138-13847753 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 240, 107 |
| Conread position: | 152-418 |
| Cow position: | chr6:914744-914475 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 152-532 |
| Cow position: | chr6:19492405-19492040 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 152-534 |
| Cow position: | chr6:26669752-26670138 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 182, 106 |
| Conread position: | 152-534 |
| Cow position: | chr6:44149446-44149829 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 240, 106 |
| Conread position: | 154-418 |
| Cow position: | chr6:30273786-30274048 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 159 |
| Conread position: | 171-409 |
| Cow position: | chr6:51492240-51492474 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 187-542 |
| Cow position: | chr6:57408290-57408640 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 273, 201 |
| Conread position: | 190-541 |
| Cow position: | chr6:54180080-54179727 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 194-533 |
| Cow position: | chr6:47042132-47042473 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 194-534 |
| Cow position: | chr6:68027996-68027649 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 139, 225 |
| Conread position: | 539-729 |
| Cow position: | chr6:5507914-5508100 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 139, 46 |
Show alignments to all cow chromosomes.