Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 92-493 |
| Cow position: | chr7:21407776-21408182 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 111-542 |
| Cow position: | chr7:36841303-36841722 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 280, 94 |
| Conread position: | 124-415 |
| Cow position: | chr7:13532672-13532965 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 125-418 |
| Cow position: | chr7:21126433-21126727 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 130-334 |
| Cow position: | chr7:62473584-62473788 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-390 |
| Cow position: | chr7:6630077-6630337 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-403 |
| Cow position: | chr7:20211845-20212117 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 130-415 |
| Cow position: | chr7:44215932-44215650 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 164, 96 |
| Conread position: | 130-425 |
| Cow position: | chr7:33332783-33332489 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 261, 128 |
| Conread position: | 130-483 |
| Cow position: | chr7:27583500-27583846 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 261, 127 |
| Conread position: | 130-488 |
| Cow position: | chr7:48805509-48805870 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 227 |
| Conread position: | 130-541 |
| Cow position: | chr7:22617751-22617347 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 132-347 |
| Cow position: | chr7:60589945-60589728 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 132-492 |
| Cow position: | chr7:14214144-14214507 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 89 |
| Conread position: | 133-534 |
| Cow position: | chr7:15652-16055 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 182, 282 |
| Conread position: | 136-295 |
| Cow position: | chr7:55015712-55015866 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 136-393 |
| Cow position: | chr7:45958270-45958018 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 136-417 |
| Cow position: | chr7:32187943-32188222 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 78 |
| Conread position: | 136-440 |
| Cow position: | chr7:21852604-21852921 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 249 |
| Conread position: | 136-483 |
| Cow position: | chr7:27348466-27348805 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 255, 35 |
| Conread position: | 136-716 |
| Cow position: | chr7:68334161-68333584 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 213, 141 |
| Conread position: | 138-415 |
| Cow position: | chr7:45947923-45948206 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 145, 98 |
| Conread position: | 138-415 |
| Cow position: | chr7:55536710-55536988 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 165 |
| Conread position: | 138-415 |
| Cow position: | chr7:66905938-66905658 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-418 |
| Cow position: | chr7:5308898-5309178 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 119 |
| Conread position: | 138-418 |
| Cow position: | chr7:10430207-10430488 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-418 |
| Cow position: | chr7:21233792-21234075 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 132, 186 |
| Conread position: | 138-418 |
| Cow position: | chr7:52763497-52763213 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 138-418 |
| Cow position: | chr7:64239788-64240068 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 215, 131 |
| Conread position: | 138-428 |
| Cow position: | chr7:67800039-67799750 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 210, 164 |
| Conread position: | 138-488 |
| Cow position: | chr7:6721362-6721011 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 139, 278 |
| Conread position: | 138-522 |
| Cow position: | chr7:34487130-34486746 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 253, 98 |
| Conread position: | 138-534 |
| Cow position: | chr7:526187-525794 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 138-534 |
| Cow position: | chr7:38398032-38397633 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 285 |
| Conread position: | 138-538 |
| Cow position: | chr7:39792985-39792584 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 253, 49 |
| Conread position: | 138-543 |
| Cow position: | chr7:27787846-27787444 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 138-544 |
| Cow position: | chr7:1371428-1371837 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 204 |
| Conread position: | 139-458 |
| Cow position: | chr7:5408703-5409011 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 252, 27 |
| Conread position: | 139-489 |
| Cow position: | chr7:50660132-50660473 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 252, 81 |
| Conread position: | 139-541 |
| Cow position: | chr7:26870669-26870274 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 255, 60 |
| Conread position: | 140-433 |
| Cow position: | chr7:21445143-21444856 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 248, 70 |
| Conread position: | 140-642 |
| Cow position: | chr7:3518287-3517790 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 141-492 |
| Cow position: | chr7:6391053-6390716 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 95 |
| Conread position: | 144-403 |
| Cow position: | chr7:45915591-45915338 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 247, 8 |
| Conread position: | 146-456 |
| Cow position: | chr7:13575508-13575206 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 147-418 |
| Cow position: | chr7:34150513-34150239 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 148-322 |
| Cow position: | chr7:23038317-23038490 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 149-363 |
| Cow position: | chr7:49723117-49723335 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 152-418 |
| Cow position: | chr7:21986628-21986361 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 152-534 |
| Cow position: | chr7:11462847-11463228 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 201, 105 |
| Conread position: | 152-534 |
| Cow position: | chr7:14138393-14138778 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 118, 263 |
| Conread position: | 152-534 |
| Cow position: | chr7:20774132-20774514 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 152-534 |
| Cow position: | chr7:27101088-27101476 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 193 |
| Conread position: | 152-538 |
| Cow position: | chr7:1452848-1452457 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 154-644 |
| Cow position: | chr7:23149077-23148584 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 158-319 |
| Cow position: | chr7:28071324-28071481 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 42 |
| Conread position: | 158-413 |
| Cow position: | chr7:53364545-53364800 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 158-419 |
| Cow position: | chr7:48404329-48404594 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 171-415 |
| Cow position: | chr7:46900899-46901139 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 162, 89 |
| Conread position: | 174-516 |
| Cow position: | chr7:33759558-33759229 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 182-541 |
| Cow position: | chr7:53407778-53407431 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 299, 90 |
| Conread position: | 187-439 |
| Cow position: | chr7:42500760-42500511 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 205, 16 |
| Conread position: | 194-534 |
| Cow position: | chr7:3299996-3300338 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 198, 220 |
| Conread position: | 194-534 |
| Cow position: | chr7:65811993-65811650 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 159, 221 |
| Conread position: | 539-709 |
| Cow position: | chr7:44215488-44215315 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 45 |
Show alignments to all cow chromosomes.