Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 51-701 |
| Cow position: | chr8:10742173-10742816 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 410 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 40, 369 |
| Conread position: | 72-538 |
| Cow position: | chr8:46108867-46109333 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 74, 170 |
| Conread position: | 90-534 |
| Cow position: | chr8:47660865-47661314 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 95-415 |
| Cow position: | chr8:36635058-36635379 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 101-430 |
| Cow position: | chr8:19190105-19189772 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 239 |
| Conread position: | 115-489 |
| Cow position: | chr8:56466066-56465694 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 115-541 |
| Cow position: | chr8:36533866-36534285 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 234, 24 |
| Conread position: | 118-489 |
| Cow position: | chr8:21584652-21584284 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 125-420 |
| Cow position: | chr8:42870280-42869987 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 125-522 |
| Cow position: | chr8:42485332-42484934 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 266, 144 |
| Conread position: | 126-415 |
| Cow position: | chr8:25409143-25408853 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 227, 214 |
| Conread position: | 126-534 |
| Cow position: | chr8:4687818-4687408 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 265, 288 |
| Conread position: | 130-402 |
| Cow position: | chr8:42747373-42747643 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 261, 55 |
| Conread position: | 130-534 |
| Cow position: | chr8:3786048-3785642 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 261, 284 |
| Conread position: | 136-321 |
| Cow position: | chr8:54517180-54516994 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 136-410 |
| Cow position: | chr8:31256046-31255776 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 136-434 |
| Cow position: | chr8:51507658-51507955 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 136-463 |
| Cow position: | chr8:5681654-5681973 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 20 |
| Conread position: | 136-464 |
| Cow position: | chr8:57182353-57182680 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 121, 29 |
| Conread position: | 136-487 |
| Cow position: | chr8:47668710-47669058 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 187, 34 |
| Conread position: | 136-489 |
| Cow position: | chr8:13491770-13491426 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 256, 68 |
| Conread position: | 136-489 |
| Cow position: | chr8:19865648-19865308 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 52 |
| Conread position: | 136-533 |
| Cow position: | chr8:44662298-44662684 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 336, 136 |
| Conread position: | 137-522 |
| Cow position: | chr8:39194813-39195192 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 254, 48 |
| Conread position: | 138-411 |
| Cow position: | chr8:3855623-3855895 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 253, 28 |
| Conread position: | 138-415 |
| Cow position: | chr8:29008040-29007765 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 138-415 |
| Cow position: | chr8:50995173-50994896 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 138-418 |
| Cow position: | chr8:8400711-8400992 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 138-418 |
| Cow position: | chr8:14590497-14590779 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-418 |
| Cow position: | chr8:14631267-14631546 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 253, 120 |
| Conread position: | 138-418 |
| Cow position: | chr8:25775269-25775552 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 138-418 |
| Cow position: | chr8:33589781-33589498 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 138-428 |
| Cow position: | chr8:12450427-12450130 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 138-439 |
| Cow position: | chr8:47454196-47454499 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 253, 91 |
| Conread position: | 138-533 |
| Cow position: | chr8:9736645-9736245 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 138, 279 |
| Conread position: | 138-534 |
| Cow position: | chr8:5017583-5017185 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr8:8555745-8556142 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 253, 275 |
| Conread position: | 138-534 |
| Cow position: | chr8:22570906-22571304 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr8:24914933-24915330 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 253, 56 |
| Conread position: | 138-534 |
| Cow position: | chr8:32436682-32437079 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 253, 43 |
| Conread position: | 138-534 |
| Cow position: | chr8:34349074-34348679 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 253, 91 |
| Conread position: | 138-534 |
| Cow position: | chr8:37654460-37654862 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 201, 98 |
| Conread position: | 138-537 |
| Cow position: | chr8:61906564-61906162 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 138-701 |
| Cow position: | chr8:19331116-19330540 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 139-412 |
| Cow position: | chr8:25417454-25417728 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 129, 66 |
| Conread position: | 139-541 |
| Cow position: | chr8:11564930-11564536 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 252, 48 |
| Conread position: | 139-541 |
| Cow position: | chr8:46180524-46180129 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 139-567 |
| Cow position: | chr8:8106446-8106874 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 252, 133 |
| Conread position: | 140-390 |
| Cow position: | chr8:19575001-19574763 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 140-535 |
| Cow position: | chr8:39809096-39809483 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 148-528 |
| Cow position: | chr8:42158594-42158976 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 218, 50 |
| Conread position: | 149-415 |
| Cow position: | chr8:25523794-25523528 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 245, 218 |
| Conread position: | 149-418 |
| Cow position: | chr8:14927488-14927756 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 242, 151 |
| Conread position: | 149-534 |
| Cow position: | chr8:37932483-37932096 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 242, 277 |
| Conread position: | 149-534 |
| Cow position: | chr8:46051574-46051193 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 242, 111 |
| Conread position: | 152-353 |
| Cow position: | chr8:13620871-13621070 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 152-467 |
| Cow position: | chr8:17312418-17312099 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 118, 267 |
| Conread position: | 152-534 |
| Cow position: | chr8:7162286-7161903 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 244, 117 |
| Conread position: | 152-534 |
| Cow position: | chr8:11803214-11802827 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 154-380 |
| Cow position: | chr8:42828628-42828406 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 82 |
| Conread position: | 154-445 |
| Cow position: | chr8:18508896-18508609 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 237, 34 |
| Conread position: | 157-458 |
| Cow position: | chr8:22940505-22940799 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 174, 22 |
| Conread position: | 159-522 |
| Cow position: | chr8:55076638-55076279 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 171-483 |
| Cow position: | chr8:32507852-32507546 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 223, 10 |
| Conread position: | 181-534 |
| Cow position: | chr8:42419067-42419431 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 170 |
| Conread position: | 184-438 |
| Cow position: | chr8:40571676-40571426 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 185-418 |
| Cow position: | chr8:44243227-44243458 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 94, 72 |
| Conread position: | 188-532 |
| Cow position: | chr8:46146987-46147331 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 133, 146 |
| Conread position: | 193-527 |
| Cow position: | chr8:2447574-2447238 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 198, 218 |
| Conread position: | 194-418 |
| Cow position: | chr8:60061731-60061506 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 194-537 |
| Cow position: | chr8:6064428-6064772 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 159, 221 |
| Conread position: | 194-537 |
| Cow position: | chr8:8517235-8517584 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 198-477 |
| Cow position: | chr8:32815544-32815823 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 144 |
| Conread position: | 331-533 |
| Cow position: | chr8:13621114-13621314 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 83 |
Show alignments to all cow chromosomes.